MuDR family transposase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Lectin_legB | PF00139 | 29 - 172 | 3.3e-23 | Legume lectin domain |
| Lectin_legB | PF00139 | 180 - 218 | 1.5e-06 | Legume lectin domain |
| Pkinase | PF00069 | 336 - 608 | 6.1e-44 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 337 - 549 | 7.6e-45 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1359 |
| AccB1I | GGYRCC | 1 cut(s) | 1206 |
| AccI | GTMKAC | 2 cut(s) | 1236, 1572 |
| AccII | CGCG | 1 cut(s) | 494 |
| AccIII | TCCGGA | 2 cut(s) | 559, 1528 |
| AclWI | GGATC | 2 cut(s) | 339, 352 |
| AcoI | YGGCCR | 1 cut(s) | 706 |
| AcsI | RAATTY | 2 cut(s) | 1223, 1692 |
| AcuI | CTGAAG | 2 cut(s) | 91, 1819 |
| AcyI | GRCGYC | 2 cut(s) | 138, 1056 |
| AfaI | GTAC | 5 cut(s) | 192, 738, 817, 1155, 1723 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 415, 1640 |
| AflIII | ACRYGT | 1 cut(s) | 1290 |
| AjiI | CACGTC | 1 cut(s) | 1749 |
| AjnI | CCWGG | 2 cut(s) | 453, 959 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1005, 1037 |
| AleI | CACNNNNGTG | 1 cut(s) | 1547 |
| Alw21I | GWGCWC | 2 cut(s) | 1171, 1830 |
| Alw26I | GTCTC | 3 cut(s) | 129, 944, 1609 |
| Alw44I | GTGCAC | 1 cut(s) | 1167 |
| AlwI | GGATC | 2 cut(s) | 339, 352 |
| Aor13HI | TCCGGA | 2 cut(s) | 559, 1528 |
| AoxI | GGCC | 6 cut(s) | 385, 706, 754, 955, 1129, 1332 |
| ApaI | GGGCCC | 1 cut(s) | 758 |
| ApaLI | GTGCAC | 1 cut(s) | 1167 |
| ApeKI | GCWGC | 7 cut(s) | 182, 241, 335, 444, 653, 1502, 1703 |
| ApoI | RAATTY | 2 cut(s) | 1223, 1692 |
| AspLEI | GCGC | 2 cut(s) | 496, 1778 |
| AspS9I | GGNCC | 4 cut(s) | 754, 755, 956, 1306 |
| AsuC2I | CCSGG | 1 cut(s) | 753 |
| AsuHPI | GGTGA | 4 cut(s) | 160, 253, 271, 1104 |
| AvaII | GGWCC | 1 cut(s) | 1306 |
| BaeGI | GKGCMC | 2 cut(s) | 758, 1171 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BamHI | GGATCC | 1 cut(s) | 344 |
| BanI | GGYRCC | 1 cut(s) | 1206 |
| BanII | GRGCYC | 3 cut(s) | 321, 602, 758 |
| BauI | CACGAG | 1 cut(s) | 628 |
| Bbv12I | GWGCWC | 2 cut(s) | 1171, 1830 |
| BbvI | GCAGC | 7 cut(s) | 194, 228, 347, 456, 640, 1489, 1715 |
| BccI | CCATC | 5 cut(s) | 152, 308, 497, 1278, 1750 |
| BceAI | ACGGC | 1 cut(s) | 373 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1807, 1841 |
| BciT130I | CCWGG | 2 cut(s) | 455, 961 |
| BcnI | CCSGG | 1 cut(s) | 753 |
| BcoDI | GTCTC | 3 cut(s) | 129, 944, 1609 |
| BfaI | CTAG | 6 cut(s) | 383, 483, 669, 695, 1469, 1512 |
| BfmI | CTRYAG | 5 cut(s) | 180, 223, 448, 1352, 1573 |
| BfuAI | ACCTGC | 1 cut(s) | 1359 |
| BisI | GCNGC | 9 cut(s) | 141, 183, 242, 336, 445, 654, 1366, 1503, 1704 |
| BlpI | GCTNAGC | 2 cut(s) | 612, 1461 |
| BlsI | GCNGC | 9 cut(s) | 142, 184, 243, 337, 446, 655, 1367, 1504, 1705 |
| BmcAI | AGTACT | 2 cut(s) | 738, 817 |
| Bme1390I | CCNGG | 3 cut(s) | 455, 753, 961 |
| Bme18I | GGWCC | 1 cut(s) | 1306 |
| BmgBI | CACGTC | 1 cut(s) | 1749 |
| BmgT120I | GGNCC | 4 cut(s) | 754, 755, 956, 1306 |
| BmiI | GGNNCC | 5 cut(s) | 346, 756, 958, 1208, 1527 |
| BmrFI | CCNGG | 3 cut(s) | 455, 753, 961 |
| BmsI | GCATC | 3 cut(s) | 997, 1186, 1857 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 612, 1461 |
| BpuEI | CTTGAG | 2 cut(s) | 714, 1118 |
| BpuMI | CCSGG | 1 cut(s) | 753 |
| BsaHI | GRCGYC | 2 cut(s) | 138, 1056 |
| BsaI | GGTCTC | 1 cut(s) | 1609 |
| BsaJI | CCNNGG | 3 cut(s) | 454, 959, 1335 |
| BsaWI | WCCGGW | 2 cut(s) | 559, 1528 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 196, 226, 422, 452, 455, 485, 1839, 1869 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 415, 1640 |
| Bse1I | ACTGG | 3 cut(s) | 376, 958, 1871 |
| BseAI | TCCGGA | 2 cut(s) | 559, 1528 |
| BseBI | CCWGG | 2 cut(s) | 455, 961 |
| BseDI | CCNNGG | 3 cut(s) | 454, 959, 1335 |
| BseGI | GGATG | 3 cut(s) | 159, 508, 1780 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 415, 1640 |
| BseMII | CTCAG | 3 cut(s) | 600, 626, 1475 |
| BseNI | ACTGG | 3 cut(s) | 376, 958, 1871 |
| BseRI | GAGGAG | 1 cut(s) | 1627 |
| BseSI | GKGCMC | 2 cut(s) | 758, 1171 |
| BseXI | GCAGC | 7 cut(s) | 194, 228, 347, 456, 640, 1489, 1715 |
| BseYI | CCCAGC | 2 cut(s) | 101, 1619 |
| Bsh1236I | CGCG | 1 cut(s) | 494 |
| Bsh1285I | CGRYCG | 1 cut(s) | 214 |
| BshFI | GGCC | 6 cut(s) | 387, 708, 756, 957, 1131, 1334 |
| BshNI | GGYRCC | 1 cut(s) | 1206 |
| BsiEI | CGRYCG | 1 cut(s) | 214 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1171, 1830 |
| BsiSI | CCGG | 5 cut(s) | 441, 560, 752, 1529, 1634 |
| BslFI | GGGAC | 1 cut(s) | 436 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 415, 1640 |
| BsmAI | GTCTC | 3 cut(s) | 129, 944, 1609 |
| BsmBI | CGTCTC | 1 cut(s) | 129 |
| BsmFI | GGGAC | 1 cut(s) | 436 |
| BsmI | GAATGC | 1 cut(s) | 605 |
| BsnI | GGCC | 6 cut(s) | 387, 708, 756, 957, 1131, 1334 |
| Bso31I | GGTCTC | 1 cut(s) | 1609 |
| Bsp120I | GGGCCC | 1 cut(s) | 754 |
| Bsp1286I | GDGCHC | 5 cut(s) | 321, 602, 758, 1171, 1830 |
| Bsp13I | TCCGGA | 2 cut(s) | 559, 1528 |
| Bsp143I | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 612, 1461 |
| BspANI | GGCC | 6 cut(s) | 387, 708, 756, 957, 1131, 1334 |
| BspCNI | CTCAG | 3 cut(s) | 599, 625, 1474 |
| BspEI | TCCGGA | 2 cut(s) | 559, 1528 |
| BspFNI | CGCG | 1 cut(s) | 494 |
| BspLI | GGNNCC | 5 cut(s) | 346, 756, 958, 1208, 1527 |
| BspMAI | CTGCAG | 2 cut(s) | 184, 1356 |
| BspMI | ACCTGC | 1 cut(s) | 1359 |
| BspPI | GGATC | 2 cut(s) | 339, 352 |
| BspT107I | GGYRCC | 1 cut(s) | 1206 |
| BspTNI | GGTCTC | 1 cut(s) | 1609 |
| BsrI | ACTGG | 3 cut(s) | 376, 958, 1871 |
| BssECI | CCNNGG | 3 cut(s) | 454, 959, 1335 |
| BssMI | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| BssNI | GRCGYC | 2 cut(s) | 138, 1056 |
| BssSI | CACGAG | 1 cut(s) | 628 |
| Bst2BI | CACGAG | 1 cut(s) | 628 |
| Bst2UI | CCWGG | 2 cut(s) | 455, 961 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| BstACI | GRCGYC | 2 cut(s) | 138, 1056 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 6 cut(s) | 64, 586, 612, 618, 1461, 1718 |
| BstF5I | GGATG | 3 cut(s) | 159, 508, 1780 |
| BstFNI | CGCG | 1 cut(s) | 494 |
| BstHHI | GCGC | 2 cut(s) | 496, 1778 |
| BstKTI | GATC | 6 cut(s) | 347, 573, 624, 810, 1372, 1474 |
| BstMAI | GTCTC | 3 cut(s) | 129, 944, 1609 |
| BstMBI | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| BstMCI | CGRYCG | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 74, 384, 450, 714 |
| BstNI | CCWGG | 2 cut(s) | 455, 961 |
| BstNSI | RCATGY | 3 cut(s) | 1294, 1502, 1608 |
| BstSCI | CCNGG | 3 cut(s) | 453, 751, 959 |
| BstSFI | CTRYAG | 5 cut(s) | 180, 223, 448, 1352, 1573 |
| BstSLI | GKGCMC | 2 cut(s) | 758, 1171 |
| BstUI | CGCG | 1 cut(s) | 494 |
| BstV1I | GCAGC | 7 cut(s) | 194, 228, 347, 456, 640, 1489, 1715 |
| BstX2I | RGATCY | 1 cut(s) | 344 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1549 |
| BstYI | RGATCY | 1 cut(s) | 344 |
| BsuRI | GGCC | 6 cut(s) | 387, 708, 756, 957, 1131, 1334 |
| BtgZI | GCGATG | 1 cut(s) | 327 |
| BtrI | CACGTC | 1 cut(s) | 1749 |
| BtsCI | GGATG | 3 cut(s) | 159, 508, 1780 |
| BtsI | GCAGTG | 2 cut(s) | 177, 1431 |
| BtsIMutI | CAGTG | 4 cut(s) | 115, 177, 1431, 1878 |
| BveI | ACCTGC | 1 cut(s) | 1359 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CfoI | GCGC | 2 cut(s) | 496, 1778 |
| Cfr13I | GGNCC | 4 cut(s) | 754, 755, 956, 1306 |
| CseI | GACGC | 3 cut(s) | 146, 196, 1045 |
| Csp6I | GTAC | 5 cut(s) | 191, 737, 816, 1154, 1722 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1730, 1765 |
| CviAII | CATG | 7 cut(s) | 238, 1291, 1414, 1475, 1499, 1522, 1605 |
| CviQI | GTAC | 5 cut(s) | 191, 737, 816, 1154, 1722 |
| DdeI | CTNAG | 6 cut(s) | 64, 586, 612, 618, 1461, 1718 |
| DpnI | GATC | 6 cut(s) | 346, 572, 623, 809, 1371, 1473 |
| DpnII | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| DraI | TTTAAA | 1 cut(s) | 1279 |
| EaeI | YGGCCR | 1 cut(s) | 706 |
| EciI | GGCGGA | 3 cut(s) | 152, 217, 843 |
| Eco147I | AGGCCT | 2 cut(s) | 387, 1131 |
| Eco24I | GRGCYC | 3 cut(s) | 321, 602, 758 |
| Eco31I | GGTCTC | 1 cut(s) | 1609 |
| Eco32I | GATATC | 2 cut(s) | 1110, 1396 |
| Eco47I | GGWCC | 1 cut(s) | 1306 |
| Eco57I | CTGAAG | 2 cut(s) | 91, 1819 |
| EcoRI | GAATTC | 1 cut(s) | 1223 |
| EcoRII | CCWGG | 2 cut(s) | 453, 959 |
| EcoRV | GATATC | 2 cut(s) | 1110, 1396 |
| EcoT38I | GRGCYC | 3 cut(s) | 321, 602, 758 |
| Esp3I | CGTCTC | 1 cut(s) | 129 |
| FaeI | CATG | 7 cut(s) | 241, 1294, 1417, 1478, 1502, 1525, 1608 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 20, 52, 723, 755 |
| FaqI | GGGAC | 1 cut(s) | 436 |
| FatI | CATG | 7 cut(s) | 237, 1290, 1413, 1474, 1498, 1521, 1604 |
| FauI | CCCGC | 1 cut(s) | 412 |
| FblI | GTMKAC | 2 cut(s) | 1236, 1572 |
| Fnu4HI | GCNGC | 9 cut(s) | 141, 183, 242, 336, 445, 654, 1366, 1503, 1704 |
| FokI | GGATG | 3 cut(s) | 146, 515, 1767 |
| FriOI | GRGCYC | 3 cut(s) | 321, 602, 758 |
| Fsp4HI | GCNGC | 9 cut(s) | 141, 183, 242, 336, 445, 654, 1366, 1503, 1704 |
| FspBI | CTAG | 6 cut(s) | 383, 483, 669, 695, 1469, 1512 |
| GlaI | GCGC | 2 cut(s) | 495, 1777 |
| GluI | GCNGC | 9 cut(s) | 141, 183, 242, 336, 445, 654, 1366, 1503, 1704 |
| GsaI | CCCAGC | 2 cut(s) | 105, 1623 |
| HaeIII | GGCC | 6 cut(s) | 387, 708, 756, 957, 1131, 1334 |
| HapII | CCGG | 5 cut(s) | 441, 560, 752, 1529, 1634 |
| HgaI | GACGC | 3 cut(s) | 146, 196, 1045 |
| HhaI | GCGC | 2 cut(s) | 496, 1778 |
| Hin1I | GRCGYC | 2 cut(s) | 138, 1056 |
| Hin1II | CATG | 7 cut(s) | 241, 1294, 1417, 1478, 1502, 1525, 1608 |
| Hin6I | GCGC | 2 cut(s) | 494, 1776 |
| HinP1I | GCGC | 2 cut(s) | 494, 1776 |
| HindIII | AAGCTT | 2 cut(s) | 29, 1019 |
| HinfI | GANTC | 7 cut(s) | 479, 541, 689, 725, 773, 916, 1118 |
| HpaII | CCGG | 5 cut(s) | 441, 560, 752, 1529, 1634 |
| HphI | GGTGA | 4 cut(s) | 160, 253, 271, 1104 |
| Hpy166II | GTNNAC | 9 cut(s) | 13, 19, 536, 639, 1048, 1169, 1237, 1573, 1724 |
| Hpy188I | TCNGA | 4 cut(s) | 883, 904, 1567, 1838 |
| Hpy188III | TCNNGA | 9 cut(s) | 560, 777, 920, 1102, 1122, 1469, 1529, 1784, 1889 |
| Hpy8I | GTNNAC | 9 cut(s) | 13, 19, 536, 639, 1048, 1169, 1237, 1573, 1724 |
| Hpy99I | CGWCG | 4 cut(s) | 212, 359, 398, 479 |
| HpyAV | CCTTC | 8 cut(s) | 50, 100, 125, 334, 512, 675, 1891, 1895 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4IV | ACGT | 4 cut(s) | 15, 425, 1687, 1748 |
| HpyCH4V | TGCA | 7 cut(s) | 182, 547, 605, 1169, 1192, 1354, 1387 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 74, 384, 450, 714 |
| HpyF3I | CTNAG | 6 cut(s) | 64, 586, 612, 618, 1461, 1718 |
| HpySE526I | ACGT | 4 cut(s) | 15, 425, 1687, 1748 |
| Hsp92I | GRCGYC | 2 cut(s) | 138, 1056 |
| Hsp92II | CATG | 7 cut(s) | 241, 1294, 1417, 1478, 1502, 1525, 1608 |
| HspAI | GCGC | 2 cut(s) | 494, 1776 |
| Kpn2I | TCCGGA | 2 cut(s) | 559, 1528 |
| Kzo9I | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| LmnI | GCTCC | 3 cut(s) | 73, 204, 1531 |
| Lsp1109I | GCAGC | 7 cut(s) | 194, 228, 347, 456, 640, 1489, 1715 |
| LweI | GCATC | 3 cut(s) | 997, 1186, 1857 |
| MaeI | CTAG | 6 cut(s) | 383, 483, 669, 695, 1469, 1512 |
| MaeII | ACGT | 4 cut(s) | 15, 425, 1687, 1748 |
| MaeIII | GTNAC | 3 cut(s) | 508, 920, 1517 |
| MalI | GATC | 6 cut(s) | 346, 572, 623, 809, 1371, 1473 |
| MboI | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| MboII | GAAGA | 4 cut(s) | 35, 319, 1117, 1688 |
| MflI | RGATCY | 1 cut(s) | 344 |
| MhlI | GDGCHC | 5 cut(s) | 321, 602, 758, 1171, 1830 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| MlyI | GAGTC | 1 cut(s) | 782 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MroI | TCCGGA | 2 cut(s) | 559, 1528 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 5 cut(s) | 86, 462, 1278, 1295, 1323 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1289, 1377, 1547, 1731 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspA1I | CMGCKG | 1 cut(s) | 1706 |
| MspI | CCGG | 5 cut(s) | 441, 560, 752, 1529, 1634 |
| MspR9I | CCNGG | 3 cut(s) | 455, 753, 961 |
| Mva1269I | GAATGC | 1 cut(s) | 605 |
| MvaI | CCWGG | 2 cut(s) | 455, 961 |
| MvnI | CGCG | 1 cut(s) | 494 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 74, 384, 450, 714 |
| NciI | CCSGG | 1 cut(s) | 753 |
| NdeII | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| NlaIII | CATG | 7 cut(s) | 241, 1294, 1417, 1478, 1502, 1525, 1608 |
| NlaIV | GGNNCC | 5 cut(s) | 346, 756, 958, 1208, 1527 |
| NmeAIII | GCCGAG | 1 cut(s) | 796 |
| NmuCI | GTSAC | 2 cut(s) | 508, 920 |
| NspI | RCATGY | 3 cut(s) | 1294, 1502, 1608 |
| OliI | CACNNNNGTG | 1 cut(s) | 1547 |
| PceI | AGGCCT | 2 cut(s) | 387, 1131 |
| PciI | ACATGT | 1 cut(s) | 1290 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 144, 204 |
| PctI | GAATGC | 1 cut(s) | 605 |
| PfeI | GAWTC | 6 cut(s) | 479, 541, 689, 725, 916, 1118 |
| PkrI | GCNGC | 9 cut(s) | 142, 184, 243, 337, 446, 655, 1367, 1504, 1705 |
| PleI | GAGTC | 1 cut(s) | 781 |
| PpsI | GAGTC | 1 cut(s) | 781 |
| PscI | ACATGT | 1 cut(s) | 1290 |
| Psp6I | CCWGG | 2 cut(s) | 453, 959 |
| PspFI | CCCAGC | 2 cut(s) | 101, 1619 |
| PspGI | CCWGG | 2 cut(s) | 453, 959 |
| PspN4I | GGNNCC | 5 cut(s) | 346, 756, 958, 1208, 1527 |
| PspOMI | GGGCCC | 1 cut(s) | 754 |
| PspPI | GGNCC | 4 cut(s) | 754, 755, 956, 1306 |
| PstI | CTGCAG | 2 cut(s) | 184, 1356 |
| PsuI | RGATCY | 1 cut(s) | 344 |
| PvuII | CAGCTG | 1 cut(s) | 1706 |
| RsaI | GTAC | 5 cut(s) | 192, 738, 817, 1155, 1723 |
| RsaNI | GTAC | 5 cut(s) | 191, 737, 816, 1154, 1722 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1289, 1377, 1547, 1731 |
| SaqAI | TTAA | 5 cut(s) | 86, 462, 1278, 1295, 1323 |
| SatI | GCNGC | 9 cut(s) | 141, 183, 242, 336, 445, 654, 1366, 1503, 1704 |
| Sau3AI | GATC | 6 cut(s) | 344, 570, 621, 807, 1369, 1471 |
| Sau96I | GGNCC | 4 cut(s) | 754, 755, 956, 1306 |
| SbfI | CCTGCAGG | 1 cut(s) | 1356 |
| ScaI | AGTACT | 2 cut(s) | 738, 817 |
| SchI | GAGTC | 1 cut(s) | 782 |
| ScrFI | CCNGG | 3 cut(s) | 455, 753, 961 |
| SdaI | CCTGCAGG | 1 cut(s) | 1356 |
| SduI | GDGCHC | 5 cut(s) | 321, 602, 758, 1171, 1830 |
| SfaNI | GCATC | 3 cut(s) | 997, 1186, 1857 |
| SfcI | CTRYAG | 5 cut(s) | 180, 223, 448, 1352, 1573 |
| SinI | GGWCC | 1 cut(s) | 1306 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1289, 1377, 1547, 1731 |
| SmlI | CTYRAG | 2 cut(s) | 729, 1133 |
| SmoI | CTYRAG | 2 cut(s) | 729, 1133 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1356 |
| SseBI | AGGCCT | 2 cut(s) | 387, 1131 |
| SspMI | CTAG | 6 cut(s) | 383, 483, 669, 695, 1469, 1512 |
| StuI | AGGCCT | 2 cut(s) | 387, 1131 |
| StyD4I | CCNGG | 3 cut(s) | 453, 751, 959 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaiI | ACGT | 4 cut(s) | 18, 428, 1690, 1751 |
| TaqII | GACCGA | 2 cut(s) | 200, 1323 |
| TatI | WGTACW | 5 cut(s) | 190, 736, 815, 1153, 1721 |
| TauI | GCSGC | 2 cut(s) | 143, 1368 |
| TfiI | GAWTC | 6 cut(s) | 479, 541, 689, 725, 916, 1118 |
| Tru1I | TTAA | 5 cut(s) | 86, 462, 1278, 1295, 1323 |
| Tru9I | TTAA | 5 cut(s) | 86, 462, 1278, 1295, 1323 |
| TscAI | CASTG | 4 cut(s) | 115, 184, 1438, 1878 |
| TseFI | GTSAC | 2 cut(s) | 508, 920 |
| TseI | GCWGC | 7 cut(s) | 182, 241, 335, 444, 653, 1502, 1703 |
| Tsp45I | GTSAC | 2 cut(s) | 508, 920 |
| TspDTI | ATGAA | 7 cut(s) | 115, 148, 319, 888, 906, 960, 1234 |
| TspGWI | ACGGA | 2 cut(s) | 357, 463 |
| TspRI | CASTG | 4 cut(s) | 115, 184, 1438, 1878 |
| VneI | GTGCAC | 1 cut(s) | 1167 |
| VpaK11BI | GGWCC | 1 cut(s) | 1306 |
| XapI | RAATTY | 2 cut(s) | 1223, 1692 |
| XbaI | TCTAGA | 1 cut(s) | 1468 |
| XceI | RCATGY | 3 cut(s) | 1294, 1502, 1608 |
| XmiI | GTMKAC | 2 cut(s) | 1236, 1572 |
| XspI | CTAG | 6 cut(s) | 383, 483, 669, 695, 1469, 1512 |
| ZrmI | AGTACT | 2 cut(s) | 738, 817 |