isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1284 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 260 |
| AccB1I | GGYRCC | 1 cut(s) | 1469 |
| AccI | GTMKAC | 1 cut(s) | 2428 |
| AciI | CCGC | 3 cut(s) | 1586, 1741, 2405 |
| AclWI | GGATC | 5 cut(s) | 276, 1331, 1504, 1752, 1869 |
| AcsI | RAATTY | 7 cut(s) | 836, 1564, 1575, 1687, 1712, 1733, 1816 |
| AcuI | CTGAAG | 1 cut(s) | 975 |
| AfaI | GTAC | 5 cut(s) | 523, 865, 1214, 2259, 2352 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2077 |
| AjnI | CCWGG | 3 cut(s) | 481, 505, 1309 |
| AleI | CACNNNNGTG | 1 cut(s) | 325 |
| Alw21I | GWGCWC | 5 cut(s) | 174, 490, 514, 1777, 1840 |
| Alw26I | GTCTC | 2 cut(s) | 801, 1634 |
| Alw44I | GTGCAC | 1 cut(s) | 1773 |
| AlwI | GGATC | 5 cut(s) | 276, 1331, 1504, 1752, 1869 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 56, 356, 506 |
| Ama87I | CYCGRG | 1 cut(s) | 1856 |
| AoxI | GGCC | 2 cut(s) | 829, 1456 |
| ApaLI | GTGCAC | 1 cut(s) | 1773 |
| ApeKI | GCWGC | 8 cut(s) | 187, 305, 350, 461, 500, 599, 614, 1793 |
| ApoI | RAATTY | 7 cut(s) | 836, 1564, 1575, 1687, 1712, 1733, 1816 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1395 |
| AspLEI | GCGC | 1 cut(s) | 310 |
| AspS9I | GGNCC | 1 cut(s) | 928 |
| AsuC2I | CCSGG | 2 cut(s) | 1127, 1477 |
| AsuHPI | GGTGA | 3 cut(s) | 599, 1259, 1925 |
| AsuII | TTCGAA | 1 cut(s) | 1766 |
| AvaI | CYCGRG | 1 cut(s) | 1856 |
| AvaII | GGWCC | 1 cut(s) | 928 |
| AxyI | CCTNAGG | 1 cut(s) | 1869 |
| BaeGI | GKGCMC | 1 cut(s) | 1777 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1593, 1626 |
| BanI | GGYRCC | 1 cut(s) | 1469 |
| BanII | GRGCYC | 1 cut(s) | 514 |
| BbsI | GAAGAC | 2 cut(s) | 732, 2049 |
| Bbv12I | GWGCWC | 5 cut(s) | 174, 490, 514, 1777, 1840 |
| BbvI | GCAGC | 8 cut(s) | 174, 317, 362, 473, 512, 611, 626, 1780 |
| BciT130I | CCWGG | 3 cut(s) | 483, 507, 1311 |
| BclI | TGATCA | 7 cut(s) | 358, 409, 439, 454, 820, 1117, 1615 |
| BcnI | CCSGG | 2 cut(s) | 1127, 1477 |
| BcoDI | GTCTC | 2 cut(s) | 801, 1634 |
| BfaI | CTAG | 4 cut(s) | 24, 446, 576, 1439 |
| BfmI | CTRYAG | 1 cut(s) | 970 |
| BfoI | RGCGCY | 1 cut(s) | 311 |
| BisI | GCNGC | 8 cut(s) | 188, 306, 351, 462, 501, 600, 615, 1794 |
| BlsI | GCNGC | 8 cut(s) | 189, 307, 352, 463, 502, 601, 616, 1795 |
| Bme1390I | CCNGG | 5 cut(s) | 483, 507, 1127, 1311, 1477 |
| Bme18I | GGWCC | 1 cut(s) | 928 |
| BmeT110I | CYCGRG | 1 cut(s) | 1856 |
| BmgT120I | GGNCC | 1 cut(s) | 928 |
| BmiI | GGNNCC | 1 cut(s) | 1471 |
| BmrFI | CCNGG | 5 cut(s) | 483, 507, 1127, 1311, 1477 |
| BmsI | GCATC | 8 cut(s) | 204, 406, 526, 571, 713, 771, 2007, 2094 |
| BpiI | GAAGAC | 2 cut(s) | 732, 2049 |
| BpmI | CTGGAG | 3 cut(s) | 504, 528, 751 |
| Bpu10I | CCTNAGC | 1 cut(s) | 168 |
| Bpu14I | TTCGAA | 1 cut(s) | 1766 |
| BpuMI | CCSGG | 2 cut(s) | 1127, 1477 |
| BsaAI | YACGTR | 1 cut(s) | 673 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1335 |
| BsaI | GGTCTC | 1 cut(s) | 1634 |
| BsaJI | CCNNGG | 3 cut(s) | 1126, 1310, 2432 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1865, 1895 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2077 |
| Bse1I | ACTGG | 2 cut(s) | 859, 1148 |
| Bse21I | CCTNAGG | 1 cut(s) | 1869 |
| Bse3DI | GCAATG | 1 cut(s) | 2057 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1335 |
| BseBI | CCWGG | 3 cut(s) | 483, 507, 1311 |
| BseDI | CCNNGG | 3 cut(s) | 1126, 1310, 2432 |
| BseGI | GGATG | 4 cut(s) | 208, 298, 1661, 2380 |
| BseJI | GATNNNNATC | 1 cut(s) | 1335 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2077 |
| BseMI | GCAATG | 1 cut(s) | 2057 |
| BseMII | CTCAG | 6 cut(s) | 159, 338, 812, 1542, 2019, 2064 |
| BseNI | ACTGG | 2 cut(s) | 859, 1148 |
| BseRI | GAGGAG | 1 cut(s) | 1082 |
| BseSI | GKGCMC | 1 cut(s) | 1777 |
| BseXI | GCAGC | 8 cut(s) | 174, 317, 362, 473, 512, 611, 626, 1780 |
| BsgI | GTGCAG | 3 cut(s) | 69, 633, 1426 |
| BshFI | GGCC | 2 cut(s) | 831, 1458 |
| BshNI | GGYRCC | 1 cut(s) | 1469 |
| BsiHKAI | GWGCWC | 5 cut(s) | 174, 490, 514, 1777, 1840 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1856 |
| BsiSI | CCGG | 2 cut(s) | 1126, 1476 |
| BsiWI | CGTACG | 1 cut(s) | 863 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2077 |
| BsmAI | GTCTC | 2 cut(s) | 801, 1634 |
| BsmI | GAATGC | 1 cut(s) | 1093 |
| BsnI | GGCC | 2 cut(s) | 831, 1458 |
| Bso31I | GGTCTC | 1 cut(s) | 1634 |
| BsoBI | CYCGRG | 1 cut(s) | 1856 |
| Bsp119I | TTCGAA | 1 cut(s) | 1766 |
| Bsp1286I | GDGCHC | 5 cut(s) | 174, 490, 514, 1777, 1840 |
| Bsp1407I | TGTACA | 1 cut(s) | 2257 |
| BspACI | CCGC | 3 cut(s) | 1586, 1741, 2405 |
| BspANI | GGCC | 2 cut(s) | 831, 1458 |
| BspCNI | CTCAG | 6 cut(s) | 160, 337, 811, 1541, 2020, 2065 |
| BspHI | TCATGA | 5 cut(s) | 397, 412, 655, 2013, 2209 |
| BspLI | GGNNCC | 1 cut(s) | 1471 |
| BspPI | GGATC | 5 cut(s) | 276, 1331, 1504, 1752, 1869 |
| BspT104I | TTCGAA | 1 cut(s) | 1766 |
| BspT107I | GGYRCC | 1 cut(s) | 1469 |
| BspTNI | GGTCTC | 1 cut(s) | 1634 |
| BsrDI | GCAATG | 1 cut(s) | 2057 |
| BsrGI | TGTACA | 1 cut(s) | 2257 |
| BsrI | ACTGG | 2 cut(s) | 859, 1148 |
| BssECI | CCNNGG | 3 cut(s) | 1126, 1310, 2432 |
| BssT1I | CCWWGG | 1 cut(s) | 2432 |
| Bst2UI | CCWGG | 3 cut(s) | 483, 507, 1311 |
| Bst6I | CTCTTC | 5 cut(s) | 168, 233, 2306, 2411, 2416 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 214, 2252 |
| BstAUI | TGTACA | 1 cut(s) | 2257 |
| BstBAI | YACGTR | 1 cut(s) | 673 |
| BstBI | TTCGAA | 1 cut(s) | 1766 |
| BstC8I | GCNNGC | 5 cut(s) | 185, 1384, 1682, 1973, 2160 |
| BstF5I | GGATG | 4 cut(s) | 208, 298, 1661, 2380 |
| BstH2I | RGCGCY | 1 cut(s) | 311 |
| BstHHI | GCGC | 1 cut(s) | 310 |
| BstMAI | GTCTC | 2 cut(s) | 801, 1634 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 29, 214, 509, 1214, 2252 |
| BstNI | CCWGG | 3 cut(s) | 483, 507, 1311 |
| BstNSI | RCATGY | 4 cut(s) | 754, 1781, 1923, 2162 |
| BstSCI | CCNGG | 5 cut(s) | 481, 505, 1125, 1309, 1475 |
| BstSFI | CTRYAG | 1 cut(s) | 970 |
| BstSLI | GKGCMC | 1 cut(s) | 1777 |
| BstV1I | GCAGC | 8 cut(s) | 174, 317, 362, 473, 512, 611, 626, 1780 |
| BstV2I | GAAGAC | 2 cut(s) | 732, 2049 |
| BstX2I | RGATCY | 2 cut(s) | 268, 1861 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1466 |
| BstYI | RGATCY | 2 cut(s) | 268, 1861 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1869 |
| BsuRI | GGCC | 2 cut(s) | 831, 1458 |
| BtgZI | GCGATG | 1 cut(s) | 905 |
| BtsCI | GGATG | 4 cut(s) | 208, 298, 1661, 2380 |
| BtsIMutI | CAGTG | 2 cut(s) | 332, 1406 |
| Cac8I | GCNNGC | 5 cut(s) | 185, 1384, 1682, 1973, 2160 |
| CaiI | CAGNNNCTG | 3 cut(s) | 56, 356, 506 |
| CciI | TCATGA | 5 cut(s) | 397, 412, 655, 2013, 2209 |
| CfoI | GCGC | 1 cut(s) | 310 |
| Cfr13I | GGNCC | 1 cut(s) | 928 |
| CseI | GACGC | 2 cut(s) | 453, 726 |
| Csp6I | GTAC | 5 cut(s) | 522, 864, 1213, 2258, 2351 |
| CviQI | GTAC | 5 cut(s) | 522, 864, 1213, 2258, 2351 |
| DraI | TTTAAA | 1 cut(s) | 124 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 260 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 260 |
| Eam1104I | CTCTTC | 5 cut(s) | 168, 233, 2306, 2411, 2416 |
| EarI | CTCTTC | 5 cut(s) | 168, 233, 2306, 2411, 2416 |
| EciI | GGCGGA | 1 cut(s) | 2394 |
| Ecl136II | GAGCTC | 1 cut(s) | 512 |
| Eco130I | CCWWGG | 1 cut(s) | 2432 |
| Eco24I | GRGCYC | 1 cut(s) | 514 |
| Eco31I | GGTCTC | 1 cut(s) | 1634 |
| Eco32I | GATATC | 3 cut(s) | 97, 693, 1192 |
| Eco47I | GGWCC | 1 cut(s) | 928 |
| Eco53kI | GAGCTC | 1 cut(s) | 512 |
| Eco57I | CTGAAG | 1 cut(s) | 975 |
| Eco81I | CCTNAGG | 1 cut(s) | 1869 |
| Eco88I | CYCGRG | 1 cut(s) | 1856 |
| EcoICRI | GAGCTC | 1 cut(s) | 512 |
| EcoRII | CCWGG | 3 cut(s) | 481, 505, 1309 |
| EcoRV | GATATC | 3 cut(s) | 97, 693, 1192 |
| EcoT14I | CCWWGG | 1 cut(s) | 2432 |
| EcoT22I | ATGCAT | 3 cut(s) | 706, 752, 1675 |
| EcoT38I | GRGCYC | 1 cut(s) | 514 |
| ErhI | CCWWGG | 1 cut(s) | 2432 |
| FauI | CCCGC | 2 cut(s) | 1593, 1734 |
| FauNDI | CATATG | 2 cut(s) | 1885, 1986 |
| FbaI | TGATCA | 7 cut(s) | 358, 409, 439, 454, 820, 1117, 1615 |
| FblI | GTMKAC | 1 cut(s) | 2428 |
| Fnu4HI | GCNGC | 8 cut(s) | 188, 306, 351, 462, 501, 600, 615, 1794 |
| FokI | GGATG | 4 cut(s) | 215, 305, 1648, 2387 |
| FriOI | GRGCYC | 1 cut(s) | 514 |
| Fsp4HI | GCNGC | 8 cut(s) | 188, 306, 351, 462, 501, 600, 615, 1794 |
| FspBI | CTAG | 4 cut(s) | 24, 446, 576, 1439 |
| GlaI | GCGC | 1 cut(s) | 309 |
| GluI | GCNGC | 8 cut(s) | 188, 306, 351, 462, 501, 600, 615, 1794 |
| GsuI | CTGGAG | 3 cut(s) | 504, 528, 751 |
| HaeII | RGCGCY | 1 cut(s) | 311 |
| HaeIII | GGCC | 2 cut(s) | 831, 1458 |
| HapII | CCGG | 2 cut(s) | 1126, 1476 |
| HgaI | GACGC | 2 cut(s) | 453, 726 |
| HhaI | GCGC | 1 cut(s) | 310 |
| Hin6I | GCGC | 1 cut(s) | 308 |
| HinP1I | GCGC | 1 cut(s) | 308 |
| HincII | GTYRAC | 2 cut(s) | 253, 1060 |
| HindII | GTYRAC | 2 cut(s) | 253, 1060 |
| HinfI | GANTC | 4 cut(s) | 1027, 1253, 1526, 2035 |
| HpaI | GTTAAC | 1 cut(s) | 1060 |
| HpaII | CCGG | 2 cut(s) | 1126, 1476 |
| HphI | GGTGA | 3 cut(s) | 599, 1259, 1925 |
| Hpy166II | GTNNAC | 6 cut(s) | 253, 1042, 1060, 1525, 1775, 2429 |
| Hpy8I | GTNNAC | 6 cut(s) | 253, 1042, 1060, 1525, 1775, 2429 |
| HpyAV | CCTTC | 4 cut(s) | 802, 836, 1385, 1448 |
| HpyCH4IV | ACGT | 2 cut(s) | 672, 2367 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 29, 214, 509, 1214, 2252 |
| HpySE526I | ACGT | 2 cut(s) | 672, 2367 |
| HspAI | GCGC | 1 cut(s) | 308 |
| Ksp22I | TGATCA | 7 cut(s) | 358, 409, 439, 454, 820, 1117, 1615 |
| KspAI | GTTAAC | 1 cut(s) | 1060 |
| LmnI | GCTCC | 7 cut(s) | 485, 509, 517, 1548, 1786, 1843, 1960 |
| Lsp1109I | GCAGC | 8 cut(s) | 174, 317, 362, 473, 512, 611, 626, 1780 |
| LweI | GCATC | 8 cut(s) | 204, 406, 526, 571, 713, 771, 2007, 2094 |
| MaeI | CTAG | 4 cut(s) | 24, 446, 576, 1439 |
| MaeII | ACGT | 2 cut(s) | 672, 2367 |
| MaeIII | GTNAC | 3 cut(s) | 52, 1429, 1600 |
| MflI | RGATCY | 2 cut(s) | 268, 1861 |
| MhlI | GDGCHC | 5 cut(s) | 174, 490, 514, 1777, 1840 |
| MlyI | GAGTC | 3 cut(s) | 1021, 1520, 2044 |
| MmeI | TCCRAC | 3 cut(s) | 54, 785, 1682 |
| Mph1103I | ATGCAT | 3 cut(s) | 706, 752, 1675 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1395 |
| MslI | CAYNNNNRTG | 5 cut(s) | 325, 381, 1248, 1830, 2018 |
| MspI | CCGG | 2 cut(s) | 1126, 1476 |
| MspR9I | CCNGG | 5 cut(s) | 483, 507, 1127, 1311, 1477 |
| MssI | GTTTAAAC | 1 cut(s) | 124 |
| Mva1269I | GAATGC | 1 cut(s) | 1093 |
| MvaI | CCWGG | 3 cut(s) | 483, 507, 1311 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 29, 214, 509, 1214, 2252 |
| NciI | CCSGG | 2 cut(s) | 1127, 1477 |
| NdeI | CATATG | 2 cut(s) | 1885, 1986 |
| NlaIV | GGNNCC | 1 cut(s) | 1471 |
| NmuCI | GTSAC | 1 cut(s) | 1429 |
| NsiI | ATGCAT | 3 cut(s) | 706, 752, 1675 |
| NspI | RCATGY | 4 cut(s) | 754, 1781, 1923, 2162 |
| NspV | TTCGAA | 1 cut(s) | 1766 |
| OliI | CACNNNNGTG | 1 cut(s) | 325 |
| PaeI | GCATGC | 1 cut(s) | 2162 |
| PaeR7I | CTCGAG | 1 cut(s) | 1856 |
| PagI | TCATGA | 5 cut(s) | 397, 412, 655, 2013, 2209 |
| PctI | GAATGC | 1 cut(s) | 1093 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1395 |
| PfeI | GAWTC | 1 cut(s) | 1253 |
| Pfl23II | CGTACG | 1 cut(s) | 863 |
| PkrI | GCNGC | 8 cut(s) | 189, 307, 352, 463, 502, 601, 616, 1795 |
| PleI | GAGTC | 3 cut(s) | 1021, 1520, 2043 |
| PmeI | GTTTAAAC | 1 cut(s) | 124 |
| PpsI | GAGTC | 3 cut(s) | 1021, 1520, 2043 |
| Ppu21I | YACGTR | 1 cut(s) | 673 |
| PsiI | TTATAA | 1 cut(s) | 1284 |
| Psp124BI | GAGCTC | 1 cut(s) | 514 |
| Psp6I | CCWGG | 3 cut(s) | 481, 505, 1309 |
| PspGI | CCWGG | 3 cut(s) | 481, 505, 1309 |
| PspLI | CGTACG | 1 cut(s) | 863 |
| PspN4I | GGNNCC | 1 cut(s) | 1471 |
| PspPI | GGNCC | 1 cut(s) | 928 |
| PstNI | CAGNNNCTG | 3 cut(s) | 56, 356, 506 |
| PsuI | RGATCY | 2 cut(s) | 268, 1861 |
| RsaI | GTAC | 5 cut(s) | 523, 865, 1214, 2259, 2352 |
| RsaNI | GTAC | 5 cut(s) | 522, 864, 1213, 2258, 2351 |
| RseI | CAYNNNNRTG | 5 cut(s) | 325, 381, 1248, 1830, 2018 |
| SacI | GAGCTC | 1 cut(s) | 514 |
| SatI | GCNGC | 8 cut(s) | 188, 306, 351, 462, 501, 600, 615, 1794 |
| Sau96I | GGNCC | 1 cut(s) | 928 |
| SchI | GAGTC | 3 cut(s) | 1021, 1520, 2044 |
| ScrFI | CCNGG | 5 cut(s) | 483, 507, 1127, 1311, 1477 |
| SduI | GDGCHC | 5 cut(s) | 174, 490, 514, 1777, 1840 |
| SfaNI | GCATC | 8 cut(s) | 204, 406, 526, 571, 713, 771, 2007, 2094 |
| SfcI | CTRYAG | 1 cut(s) | 970 |
| Sfr274I | CTCGAG | 1 cut(s) | 1856 |
| SfuI | TTCGAA | 1 cut(s) | 1766 |
| SinI | GGWCC | 1 cut(s) | 928 |
| SlaI | CTCGAG | 1 cut(s) | 1856 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 325, 381, 1248, 1830, 2018 |
| SmlI | CTYRAG | 1 cut(s) | 1856 |
| SmoI | CTYRAG | 1 cut(s) | 1856 |
| SphI | GCATGC | 1 cut(s) | 2162 |
| SsiI | CCGC | 3 cut(s) | 1586, 1741, 2405 |
| SspI | AATATT | 2 cut(s) | 301, 2100 |
| SspMI | CTAG | 4 cut(s) | 24, 446, 576, 1439 |
| SstI | GAGCTC | 1 cut(s) | 514 |
| StyD4I | CCNGG | 5 cut(s) | 481, 505, 1125, 1309, 1475 |
| StyI | CCWWGG | 1 cut(s) | 2432 |
| TaiI | ACGT | 2 cut(s) | 675, 2370 |
| TaqI | TCGA | 4 cut(s) | 1270, 1747, 1766, 1857 |
| TaqII | GACCGA | 1 cut(s) | 250 |
| TatI | WGTACW | 1 cut(s) | 2257 |
| TfiI | GAWTC | 1 cut(s) | 1253 |
| TscAI | CASTG | 2 cut(s) | 332, 1406 |
| TseFI | GTSAC | 1 cut(s) | 1429 |
| TseI | GCWGC | 8 cut(s) | 187, 305, 350, 461, 500, 599, 614, 1793 |
| Tsp45I | GTSAC | 1 cut(s) | 1429 |
| TspRI | CASTG | 2 cut(s) | 332, 1406 |
| VneI | GTGCAC | 1 cut(s) | 1773 |
| VpaK11BI | GGWCC | 1 cut(s) | 928 |
| XapI | RAATTY | 7 cut(s) | 836, 1564, 1575, 1687, 1712, 1733, 1816 |
| XbaI | TCTAGA | 1 cut(s) | 1438 |
| XceI | RCATGY | 4 cut(s) | 754, 1781, 1923, 2162 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1984 |
| XhoI | CTCGAG | 1 cut(s) | 1856 |
| XmiI | GTMKAC | 1 cut(s) | 2428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1395 |
| XspI | CTAG | 4 cut(s) | 24, 446, 576, 1439 |
| Zsp2I | ATGCAT | 3 cut(s) | 706, 752, 1675 |