isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 461 |
| AccB1I | GGYRCC | 2 cut(s) | 280, 1038 |
| AccII | CGCG | 1 cut(s) | 854 |
| AciI | CCGC | 3 cut(s) | 608, 626, 695 |
| AclI | AACGTT | 1 cut(s) | 556 |
| AclWI | GGATC | 1 cut(s) | 480 |
| AcoI | YGGCCR | 3 cut(s) | 952, 956, 1018 |
| AcsI | RAATTY | 2 cut(s) | 232, 500 |
| AfaI | GTAC | 2 cut(s) | 1060, 1087 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 290, 694 |
| AflIII | ACRYGT | 2 cut(s) | 840, 1055 |
| AgsI | TTSAA | 6 cut(s) | 121, 232, 372, 541, 637, 912 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 521, 553 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 464, 496 |
| AluBI | AGCT | 3 cut(s) | 837, 905, 1076 |
| AluI | AGCT | 3 cut(s) | 837, 905, 1076 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 272 |
| Alw26I | GTCTC | 2 cut(s) | 35, 103 |
| Alw44I | GTGCAC | 1 cut(s) | 25 |
| AlwI | GGATC | 1 cut(s) | 480 |
| AoxI | GGCC | 5 cut(s) | 413, 944, 952, 956, 1018 |
| ApaLI | GTGCAC | 1 cut(s) | 25 |
| ApeKI | GCWGC | 3 cut(s) | 770, 902, 983 |
| ApoI | RAATTY | 2 cut(s) | 232, 500 |
| AseI | ATTAAT | 1 cut(s) | 741 |
| AspLEI | GCGC | 2 cut(s) | 856, 1066 |
| AsuHPI | GGTGA | 2 cut(s) | 262, 1040 |
| AsuII | TTCGAA | 3 cut(s) | 483, 552, 970 |
| BaeGI | GKGCMC | 1 cut(s) | 29 |
| BanI | GGYRCC | 2 cut(s) | 280, 1038 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 295, 327 |
| BauI | CACGAG | 1 cut(s) | 997 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 272 |
| BbvI | GCAGC | 3 cut(s) | 757, 914, 995 |
| BccI | CCATC | 1 cut(s) | 955 |
| BceAI | ACGGC | 2 cut(s) | 711, 802 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BciVI | GTATCC | 1 cut(s) | 647 |
| BcoDI | GTCTC | 2 cut(s) | 35, 103 |
| BfaI | CTAG | 1 cut(s) | 906 |
| BfmI | CTRYAG | 1 cut(s) | 981 |
| BfuI | GTATCC | 1 cut(s) | 647 |
| BisI | GCNGC | 4 cut(s) | 627, 771, 903, 984 |
| BlsI | GCNGC | 4 cut(s) | 628, 772, 904, 985 |
| Bme1390I | CCNGG | 1 cut(s) | 156 |
| BmiI | GGNNCC | 4 cut(s) | 282, 423, 795, 1040 |
| BmrFI | CCNGG | 1 cut(s) | 156 |
| BmsI | GCATC | 2 cut(s) | 376, 889 |
| Bpu14I | TTCGAA | 3 cut(s) | 483, 552, 970 |
| BpuEI | CTTGAG | 1 cut(s) | 160 |
| BsaAI | YACGTR | 1 cut(s) | 30 |
| BsaI | GGTCTC | 1 cut(s) | 103 |
| BsaJI | CCNNGG | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 289, 319 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 290, 694 |
| Bse118I | RCCGGY | 1 cut(s) | 954 |
| Bse1I | ACTGG | 1 cut(s) | 676 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseDI | CCNNGG | 1 cut(s) | 154 |
| BseGI | GGATG | 5 cut(s) | 10, 196, 337, 865, 947 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 290, 694 |
| BseNI | ACTGG | 1 cut(s) | 676 |
| BseRI | GAGGAG | 1 cut(s) | 1015 |
| BseSI | GKGCMC | 1 cut(s) | 29 |
| BseX3I | CGGCCG | 1 cut(s) | 952 |
| BseXI | GCAGC | 3 cut(s) | 757, 914, 995 |
| Bsh1236I | CGCG | 1 cut(s) | 854 |
| Bsh1285I | CGRYCG | 1 cut(s) | 955 |
| BshFI | GGCC | 5 cut(s) | 415, 946, 954, 958, 1020 |
| BshNI | GGYRCC | 2 cut(s) | 280, 1038 |
| BsiEI | CGRYCG | 1 cut(s) | 955 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 272 |
| BsiSI | CCGG | 2 cut(s) | 951, 955 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 290, 694 |
| BsmAI | GTCTC | 2 cut(s) | 35, 103 |
| BsmI | GAATGC | 1 cut(s) | 603 |
| BsnI | GGCC | 5 cut(s) | 415, 946, 954, 958, 1020 |
| Bso31I | GGTCTC | 1 cut(s) | 103 |
| Bsp119I | TTCGAA | 3 cut(s) | 483, 552, 970 |
| Bsp1286I | GDGCHC | 2 cut(s) | 29, 272 |
| Bsp143I | GATC | 2 cut(s) | 472, 700 |
| BspACI | CCGC | 3 cut(s) | 608, 626, 695 |
| BspANI | GGCC | 5 cut(s) | 415, 946, 954, 958, 1020 |
| BspFNI | CGCG | 1 cut(s) | 854 |
| BspHI | TCATGA | 1 cut(s) | 442 |
| BspLI | GGNNCC | 4 cut(s) | 282, 423, 795, 1040 |
| BspMAI | CTGCAG | 1 cut(s) | 985 |
| BspPI | GGATC | 1 cut(s) | 480 |
| BspT104I | TTCGAA | 3 cut(s) | 483, 552, 970 |
| BspT107I | GGYRCC | 2 cut(s) | 280, 1038 |
| BspTNI | GGTCTC | 1 cut(s) | 103 |
| BsrFI | RCCGGY | 1 cut(s) | 954 |
| BsrI | ACTGG | 1 cut(s) | 676 |
| BssAI | RCCGGY | 1 cut(s) | 954 |
| BssECI | CCNNGG | 1 cut(s) | 154 |
| BssMI | GATC | 2 cut(s) | 472, 700 |
| BssSI | CACGAG | 1 cut(s) | 997 |
| Bst2BI | CACGAG | 1 cut(s) | 997 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| Bst6I | CTCTTC | 1 cut(s) | 632 |
| BstBAI | YACGTR | 1 cut(s) | 30 |
| BstBI | TTCGAA | 3 cut(s) | 483, 552, 970 |
| BstC8I | GCNNGC | 2 cut(s) | 956, 1078 |
| BstF5I | GGATG | 5 cut(s) | 10, 196, 337, 865, 947 |
| BstFNI | CGCG | 1 cut(s) | 854 |
| BstHHI | GCGC | 2 cut(s) | 856, 1066 |
| BstKTI | GATC | 2 cut(s) | 475, 703 |
| BstMAI | GTCTC | 2 cut(s) | 35, 103 |
| BstMBI | GATC | 2 cut(s) | 472, 700 |
| BstMCI | CGRYCG | 1 cut(s) | 955 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 588, 770 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstNSI | RCATGY | 3 cut(s) | 661, 764, 844 |
| BstSCI | CCNGG | 1 cut(s) | 154 |
| BstSFI | CTRYAG | 1 cut(s) | 981 |
| BstSLI | GKGCMC | 1 cut(s) | 29 |
| BstUI | CGCG | 1 cut(s) | 854 |
| BstV1I | GCAGC | 3 cut(s) | 757, 914, 995 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 785 |
| BstZI | CGGCCG | 1 cut(s) | 952 |
| BsuI | GTATCC | 1 cut(s) | 647 |
| BsuRI | GGCC | 5 cut(s) | 415, 946, 954, 958, 1020 |
| BtsCI | GGATG | 5 cut(s) | 10, 196, 337, 865, 947 |
| BtsIMutI | CAGTG | 1 cut(s) | 369 |
| Cac8I | GCNNGC | 2 cut(s) | 956, 1078 |
| CciI | TCATGA | 1 cut(s) | 442 |
| CfoI | GCGC | 2 cut(s) | 856, 1066 |
| Cfr10I | RCCGGY | 1 cut(s) | 954 |
| CseI | GACGC | 1 cut(s) | 917 |
| Csp6I | GTAC | 2 cut(s) | 1059, 1086 |
| CviQI | GTAC | 2 cut(s) | 1059, 1086 |
| DpnI | GATC | 2 cut(s) | 474, 702 |
| DpnII | GATC | 2 cut(s) | 472, 700 |
| DraI | TTTAAA | 1 cut(s) | 226 |
| EaeI | YGGCCR | 3 cut(s) | 952, 956, 1018 |
| EagI | CGGCCG | 1 cut(s) | 952 |
| Eam1104I | CTCTTC | 1 cut(s) | 632 |
| EarI | CTCTTC | 1 cut(s) | 632 |
| EclXI | CGGCCG | 1 cut(s) | 952 |
| Eco31I | GGTCTC | 1 cut(s) | 103 |
| Eco52I | CGGCCG | 1 cut(s) | 952 |
| EcoRI | GAATTC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| EcoT22I | ATGCAT | 1 cut(s) | 605 |
| Fnu4HI | GCNGC | 4 cut(s) | 627, 771, 903, 984 |
| FokI | GGATG | 5 cut(s) | 17, 203, 344, 852, 934 |
| FseI | GGCCGGCC | 1 cut(s) | 958 |
| Fsp4HI | GCNGC | 4 cut(s) | 627, 771, 903, 984 |
| FspBI | CTAG | 1 cut(s) | 906 |
| GlaI | GCGC | 2 cut(s) | 855, 1065 |
| GluI | GCNGC | 4 cut(s) | 627, 771, 903, 984 |
| HaeIII | GGCC | 5 cut(s) | 415, 946, 954, 958, 1020 |
| HapII | CCGG | 2 cut(s) | 951, 955 |
| HgaI | GACGC | 1 cut(s) | 917 |
| HhaI | GCGC | 2 cut(s) | 856, 1066 |
| Hin6I | GCGC | 2 cut(s) | 854, 1064 |
| HinP1I | GCGC | 2 cut(s) | 854, 1064 |
| HincII | GTYRAC | 1 cut(s) | 516 |
| HindII | GTYRAC | 1 cut(s) | 516 |
| HinfI | GANTC | 2 cut(s) | 121, 257 |
| HpaII | CCGG | 2 cut(s) | 951, 955 |
| HphI | GGTGA | 2 cut(s) | 262, 1040 |
| Hpy166II | GTNNAC | 4 cut(s) | 27, 516, 758, 1059 |
| Hpy188I | TCNGA | 1 cut(s) | 1071 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 443 |
| Hpy8I | GTNNAC | 4 cut(s) | 27, 516, 758, 1059 |
| HpyAV | CCTTC | 2 cut(s) | 479, 983 |
| HpyCH4IV | ACGT | 4 cut(s) | 29, 74, 556, 1055 |
| HpyCH4V | TGCA | 9 cut(s) | 8, 27, 317, 389, 582, 603, 773, 902, 983 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 588, 770 |
| HpySE526I | ACGT | 4 cut(s) | 29, 74, 556, 1055 |
| HspAI | GCGC | 2 cut(s) | 854, 1064 |
| KroI | GCCGGC | 1 cut(s) | 954 |
| KroNI | GCCGGC | 1 cut(s) | 956 |
| Kzo9I | GATC | 2 cut(s) | 472, 700 |
| LmnI | GCTCC | 2 cut(s) | 267, 427 |
| Lsp1109I | GCAGC | 3 cut(s) | 757, 914, 995 |
| LweI | GCATC | 2 cut(s) | 376, 889 |
| MaeI | CTAG | 1 cut(s) | 906 |
| MaeII | ACGT | 4 cut(s) | 29, 74, 556, 1055 |
| MaeIII | GTNAC | 1 cut(s) | 806 |
| MalI | GATC | 2 cut(s) | 474, 702 |
| MboI | GATC | 2 cut(s) | 472, 700 |
| MboII | GAAGA | 4 cut(s) | 342, 553, 649, 908 |
| MhlI | GDGCHC | 2 cut(s) | 29, 272 |
| MluCI | AATT | 7 cut(s) | 115, 227, 232, 500, 529, 738, 742 |
| MmeI | TCCRAC | 1 cut(s) | 766 |
| Mph1103I | ATGCAT | 1 cut(s) | 605 |
| MroNI | GCCGGC | 1 cut(s) | 954 |
| MseI | TTAA | 6 cut(s) | 78, 111, 225, 594, 741, 924 |
| MslI | CAYNNNNRTG | 3 cut(s) | 32, 278, 751 |
| MspI | CCGG | 2 cut(s) | 951, 955 |
| MspR9I | CCNGG | 1 cut(s) | 156 |
| Mva1269I | GAATGC | 1 cut(s) | 603 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MvnI | CGCG | 1 cut(s) | 854 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 588, 770 |
| NaeI | GCCGGC | 1 cut(s) | 956 |
| NdeII | GATC | 2 cut(s) | 472, 700 |
| NgoMIV | GCCGGC | 1 cut(s) | 954 |
| NlaIV | GGNNCC | 4 cut(s) | 282, 423, 795, 1040 |
| NsiI | ATGCAT | 1 cut(s) | 605 |
| NspI | RCATGY | 3 cut(s) | 661, 764, 844 |
| NspV | TTCGAA | 3 cut(s) | 483, 552, 970 |
| PagI | TCATGA | 1 cut(s) | 442 |
| PciI | ACATGT | 1 cut(s) | 840 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 553 |
| PctI | GAATGC | 1 cut(s) | 603 |
| PdiI | GCCGGC | 1 cut(s) | 956 |
| PfeI | GAWTC | 2 cut(s) | 121, 257 |
| PkrI | GCNGC | 4 cut(s) | 628, 772, 904, 985 |
| Ppu21I | YACGTR | 1 cut(s) | 30 |
| PscI | ACATGT | 1 cut(s) | 840 |
| PshBI | ATTAAT | 1 cut(s) | 741 |
| PsiI | TTATAA | 1 cut(s) | 461 |
| Psp1406I | AACGTT | 1 cut(s) | 556 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 4 cut(s) | 282, 423, 795, 1040 |
| PstI | CTGCAG | 1 cut(s) | 985 |
| RigI | GGCCGGCC | 1 cut(s) | 958 |
| RsaI | GTAC | 2 cut(s) | 1060, 1087 |
| RsaNI | GTAC | 2 cut(s) | 1059, 1086 |
| RseI | CAYNNNNRTG | 3 cut(s) | 32, 278, 751 |
| SaqAI | TTAA | 6 cut(s) | 78, 111, 225, 594, 741, 924 |
| SatI | GCNGC | 4 cut(s) | 627, 771, 903, 984 |
| Sau3AI | GATC | 2 cut(s) | 472, 700 |
| ScrFI | CCNGG | 1 cut(s) | 156 |
| SduI | GDGCHC | 2 cut(s) | 29, 272 |
| SfaNI | GCATC | 2 cut(s) | 376, 889 |
| SfcI | CTRYAG | 1 cut(s) | 981 |
| SfuI | TTCGAA | 3 cut(s) | 483, 552, 970 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 32, 278, 751 |
| SmlI | CTYRAG | 1 cut(s) | 139 |
| SmoI | CTYRAG | 1 cut(s) | 139 |
| Sse9I | AATT | 7 cut(s) | 115, 227, 232, 500, 529, 738, 742 |
| SsiI | CCGC | 3 cut(s) | 608, 626, 695 |
| SspI | AATATT | 1 cut(s) | 379 |
| SspMI | CTAG | 1 cut(s) | 906 |
| StyD4I | CCNGG | 1 cut(s) | 154 |
| TaiI | ACGT | 4 cut(s) | 32, 77, 559, 1058 |
| TaqI | TCGA | 4 cut(s) | 135, 483, 552, 970 |
| TasI | AATT | 7 cut(s) | 115, 227, 232, 500, 529, 738, 742 |
| TatI | WGTACW | 2 cut(s) | 1058, 1085 |
| TauI | GCSGC | 1 cut(s) | 629 |
| TfiI | GAWTC | 2 cut(s) | 121, 257 |
| Tru1I | TTAA | 6 cut(s) | 78, 111, 225, 594, 741, 924 |
| Tru9I | TTAA | 6 cut(s) | 78, 111, 225, 594, 741, 924 |
| TscAI | CASTG | 1 cut(s) | 369 |
| TseI | GCWGC | 3 cut(s) | 770, 902, 983 |
| TspDTI | ATGAA | 9 cut(s) | 80, 120, 330, 342, 553, 735, 854, 909, 989 |
| TspRI | CASTG | 1 cut(s) | 369 |
| VneI | GTGCAC | 1 cut(s) | 25 |
| VspI | ATTAAT | 1 cut(s) | 741 |
| XapI | RAATTY | 2 cut(s) | 232, 500 |
| XceI | RCATGY | 3 cut(s) | 661, 764, 844 |
| XspI | CTAG | 1 cut(s) | 906 |
| Zsp2I | ATGCAT | 1 cut(s) | 605 |