isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 280 |
| AccII | CGCG | 1 cut(s) | 522 |
| AciI | CCGC | 3 cut(s) | 947, 1120, 1543 |
| AclWI | GGATC | 2 cut(s) | 479, 866 |
| AcsI | RAATTY | 2 cut(s) | 232, 1190 |
| AfaI | GTAC | 2 cut(s) | 146, 1145 |
| AflII | CTTAAG | 1 cut(s) | 1429 |
| AflIII | ACRYGT | 1 cut(s) | 1335 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 289, 321 |
| AluBI | AGCT | 6 cut(s) | 168, 616, 773, 808, 1227, 1402 |
| AluI | AGCT | 6 cut(s) | 168, 616, 773, 808, 1227, 1402 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 272 |
| Alw26I | GTCTC | 6 cut(s) | 35, 103, 630, 702, 1121, 1565 |
| Alw44I | GTGCAC | 1 cut(s) | 25 |
| AlwI | GGATC | 2 cut(s) | 479, 866 |
| ApaLI | GTGCAC | 1 cut(s) | 25 |
| ApeKI | GCWGC | 3 cut(s) | 601, 808, 965 |
| ApoI | RAATTY | 2 cut(s) | 232, 1190 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1375, 1407, 1477, 1509 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1281 |
| AspLEI | GCGC | 1 cut(s) | 524 |
| AspS9I | GGNCC | 2 cut(s) | 1265, 1485 |
| AsuC2I | CCSGG | 1 cut(s) | 846 |
| AsuHPI | GGTGA | 5 cut(s) | 262, 550, 803, 1203, 1355 |
| AvaII | GGWCC | 2 cut(s) | 1265, 1485 |
| BaeGI | GKGCMC | 1 cut(s) | 29 |
| BanI | GGYRCC | 1 cut(s) | 280 |
| BanII | GRGCYC | 1 cut(s) | 851 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 295, 327 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 272 |
| BbvI | GCAGC | 3 cut(s) | 613, 795, 952 |
| BccI | CCATC | 2 cut(s) | 494, 782 |
| BceAI | ACGGC | 1 cut(s) | 1282 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BciVI | GTATCC | 1 cut(s) | 986 |
| BclI | TGATCA | 1 cut(s) | 1095 |
| BcnI | CCSGG | 1 cut(s) | 846 |
| BcoDI | GTCTC | 6 cut(s) | 35, 103, 630, 702, 1121, 1565 |
| BfaI | CTAG | 5 cut(s) | 416, 765, 837, 1386, 1566 |
| BfrI | CTTAAG | 1 cut(s) | 1429 |
| BfuI | GTATCC | 1 cut(s) | 986 |
| BisI | GCNGC | 4 cut(s) | 602, 809, 966, 1544 |
| BlsI | GCNGC | 4 cut(s) | 603, 810, 967, 1545 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 846 |
| Bme18I | GGWCC | 2 cut(s) | 1265, 1485 |
| BmgT120I | GGNCC | 2 cut(s) | 1265, 1485 |
| BmiI | GGNNCC | 2 cut(s) | 282, 423 |
| BmrFI | CCNGG | 2 cut(s) | 156, 846 |
| BmsI | GCATC | 3 cut(s) | 376, 814, 952 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1437 |
| BpuEI | CTTGAG | 2 cut(s) | 160, 662 |
| BpuMI | CCSGG | 1 cut(s) | 846 |
| BsaAI | YACGTR | 1 cut(s) | 30 |
| BsaI | GGTCTC | 2 cut(s) | 103, 630 |
| BsaJI | CCNNGG | 2 cut(s) | 154, 778 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 289, 319, 1439, 1469, 1502, 1532 |
| Bse1I | ACTGG | 1 cut(s) | 1015 |
| Bse3DI | GCAATG | 1 cut(s) | 1321 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseDI | CCNNGG | 2 cut(s) | 154, 778 |
| BseGI | GGATG | 4 cut(s) | 10, 196, 337, 967 |
| BseMI | GCAATG | 1 cut(s) | 1321 |
| BseMII | CTCAG | 2 cut(s) | 818, 1449 |
| BseNI | ACTGG | 1 cut(s) | 1015 |
| BseSI | GKGCMC | 1 cut(s) | 29 |
| BseXI | GCAGC | 3 cut(s) | 613, 795, 952 |
| BsgI | GTGCAG | 1 cut(s) | 469 |
| Bsh1236I | CGCG | 1 cut(s) | 522 |
| BshNI | GGYRCC | 1 cut(s) | 280 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 272 |
| BsiSI | CCGG | 1 cut(s) | 845 |
| BsmAI | GTCTC | 6 cut(s) | 35, 103, 630, 702, 1121, 1565 |
| BsmBI | CGTCTC | 1 cut(s) | 35 |
| BsmI | GAATGC | 2 cut(s) | 709, 942 |
| Bso31I | GGTCTC | 2 cut(s) | 103, 630 |
| Bsp1286I | GDGCHC | 3 cut(s) | 29, 272, 851 |
| Bsp143I | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| Bsp19I | CCATGG | 1 cut(s) | 778 |
| BspACI | CCGC | 3 cut(s) | 947, 1120, 1543 |
| BspCNI | CTCAG | 2 cut(s) | 817, 1450 |
| BspFNI | CGCG | 1 cut(s) | 522 |
| BspHI | TCATGA | 2 cut(s) | 442, 784 |
| BspLI | GGNNCC | 2 cut(s) | 282, 423 |
| BspPI | GGATC | 2 cut(s) | 479, 866 |
| BspT107I | GGYRCC | 1 cut(s) | 280 |
| BspTI | CTTAAG | 1 cut(s) | 1429 |
| BspTNI | GGTCTC | 2 cut(s) | 103, 630 |
| BsrDI | GCAATG | 1 cut(s) | 1321 |
| BsrI | ACTGG | 1 cut(s) | 1015 |
| BssECI | CCNNGG | 2 cut(s) | 154, 778 |
| BssMI | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| BssT1I | CCWWGG | 1 cut(s) | 778 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 1 cut(s) | 1576 |
| Bst6I | CTCTTC | 1 cut(s) | 1272 |
| BstAFI | CTTAAG | 1 cut(s) | 1429 |
| BstBAI | YACGTR | 1 cut(s) | 30 |
| BstC8I | GCNNGC | 2 cut(s) | 1225, 1474 |
| BstDEI | CTNAG | 5 cut(s) | 486, 596, 804, 1437, 1458 |
| BstDSI | CCRYGG | 1 cut(s) | 778 |
| BstF5I | GGATG | 4 cut(s) | 10, 196, 337, 967 |
| BstFNI | CGCG | 1 cut(s) | 522 |
| BstHHI | GCGC | 1 cut(s) | 524 |
| BstKTI | GATC | 5 cut(s) | 48, 474, 874, 1098, 1292 |
| BstMAI | GTCTC | 6 cut(s) | 35, 103, 630, 702, 1121, 1565 |
| BstMBI | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 770, 927, 1294 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstNSI | RCATGY | 4 cut(s) | 585, 1000, 1339, 1476 |
| BstSCI | CCNGG | 2 cut(s) | 154, 844 |
| BstSLI | GKGCMC | 1 cut(s) | 29 |
| BstUI | CGCG | 1 cut(s) | 522 |
| BstV1I | GCAGC | 3 cut(s) | 613, 795, 952 |
| BsuI | GTATCC | 1 cut(s) | 986 |
| BtgI | CCRYGG | 1 cut(s) | 778 |
| BtsCI | GGATG | 4 cut(s) | 10, 196, 337, 967 |
| Cac8I | GCNNGC | 2 cut(s) | 1225, 1474 |
| CciI | TCATGA | 2 cut(s) | 442, 784 |
| CfoI | GCGC | 1 cut(s) | 524 |
| Cfr13I | GGNCC | 2 cut(s) | 1265, 1485 |
| Csp6I | GTAC | 2 cut(s) | 145, 1144 |
| CviQI | GTAC | 2 cut(s) | 145, 1144 |
| DdeI | CTNAG | 5 cut(s) | 486, 596, 804, 1437, 1458 |
| DpnI | GATC | 5 cut(s) | 47, 473, 873, 1097, 1291 |
| DpnII | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| Eam1104I | CTCTTC | 1 cut(s) | 1272 |
| EarI | CTCTTC | 1 cut(s) | 1272 |
| Eco130I | CCWWGG | 1 cut(s) | 778 |
| Eco24I | GRGCYC | 1 cut(s) | 851 |
| Eco31I | GGTCTC | 2 cut(s) | 103, 630 |
| Eco47I | GGWCC | 2 cut(s) | 1265, 1485 |
| EcoRI | GAATTC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| EcoT14I | CCWWGG | 1 cut(s) | 778 |
| EcoT22I | ATGCAT | 2 cut(s) | 944, 1321 |
| EcoT38I | GRGCYC | 1 cut(s) | 851 |
| ErhI | CCWWGG | 1 cut(s) | 778 |
| Esp3I | CGTCTC | 1 cut(s) | 35 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 579, 611 |
| FbaI | TGATCA | 1 cut(s) | 1095 |
| Fnu4HI | GCNGC | 4 cut(s) | 602, 809, 966, 1544 |
| FokI | GGATG | 4 cut(s) | 17, 203, 344, 974 |
| FriOI | GRGCYC | 1 cut(s) | 851 |
| Fsp4HI | GCNGC | 4 cut(s) | 602, 809, 966, 1544 |
| FspBI | CTAG | 5 cut(s) | 416, 765, 837, 1386, 1566 |
| GlaI | GCGC | 1 cut(s) | 523 |
| GluI | GCNGC | 4 cut(s) | 602, 809, 966, 1544 |
| HapII | CCGG | 1 cut(s) | 845 |
| HhaI | GCGC | 1 cut(s) | 524 |
| Hin6I | GCGC | 1 cut(s) | 522 |
| HinP1I | GCGC | 1 cut(s) | 522 |
| HincII | GTYRAC | 1 cut(s) | 1174 |
| HindII | GTYRAC | 1 cut(s) | 1174 |
| HindIII | AAGCTT | 1 cut(s) | 614 |
| HinfI | GANTC | 5 cut(s) | 121, 257, 794, 1061, 1367 |
| HpaII | CCGG | 1 cut(s) | 845 |
| HphI | GGTGA | 5 cut(s) | 262, 550, 803, 1203, 1355 |
| Hpy166II | GTNNAC | 5 cut(s) | 27, 577, 1144, 1174, 1485 |
| Hpy188I | TCNGA | 5 cut(s) | 499, 643, 1066, 1159, 1459 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 443, 785, 821 |
| Hpy8I | GTNNAC | 5 cut(s) | 27, 577, 1144, 1174, 1485 |
| HpyAV | CCTTC | 4 cut(s) | 748, 919, 1253, 1418 |
| HpyCH4III | ACNGT | 1 cut(s) | 1576 |
| HpyCH4IV | ACGT | 2 cut(s) | 29, 74 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 770, 927, 1294 |
| HpyF3I | CTNAG | 5 cut(s) | 486, 596, 804, 1437, 1458 |
| HpySE526I | ACGT | 2 cut(s) | 29, 74 |
| HspAI | GCGC | 1 cut(s) | 522 |
| Ksp22I | TGATCA | 1 cut(s) | 1095 |
| Kzo9I | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| LmnI | GCTCC | 2 cut(s) | 267, 427 |
| LpnPI | CCDG | 6 cut(s) | 141, 168, 436, 858, 900, 996 |
| Lsp1109I | GCAGC | 3 cut(s) | 613, 795, 952 |
| LweI | GCATC | 3 cut(s) | 376, 814, 952 |
| MaeI | CTAG | 5 cut(s) | 416, 765, 837, 1386, 1566 |
| MaeII | ACGT | 2 cut(s) | 29, 74 |
| MaeIII | GTNAC | 2 cut(s) | 791, 1360 |
| MalI | GATC | 5 cut(s) | 47, 473, 873, 1097, 1291 |
| MboI | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| MboII | GAAGA | 6 cut(s) | 342, 541, 892, 1027, 1264, 1289 |
| MfeI | CAATTG | 1 cut(s) | 1378 |
| MhlI | GDGCHC | 3 cut(s) | 29, 272, 851 |
| MluCI | AATT | 6 cut(s) | 227, 232, 1078, 1162, 1190, 1378 |
| MlyI | GAGTC | 2 cut(s) | 788, 1376 |
| MmeI | TCCRAC | 2 cut(s) | 546, 1281 |
| Mph1103I | ATGCAT | 2 cut(s) | 944, 1321 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1281 |
| MseI | TTAA | 7 cut(s) | 78, 111, 878, 933, 1374, 1430, 1591 |
| MslI | CAYNNNNRTG | 4 cut(s) | 32, 278, 783, 789 |
| MspA1I | CMGCKG | 1 cut(s) | 808 |
| MspCI | CTTAAG | 1 cut(s) | 1429 |
| MspI | CCGG | 1 cut(s) | 845 |
| MspR9I | CCNGG | 2 cut(s) | 156, 846 |
| MunI | CAATTG | 1 cut(s) | 1378 |
| Mva1269I | GAATGC | 2 cut(s) | 709, 942 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MvnI | CGCG | 1 cut(s) | 522 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 770, 927, 1294 |
| NciI | CCSGG | 1 cut(s) | 846 |
| NcoI | CCATGG | 1 cut(s) | 778 |
| NdeII | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| NlaIV | GGNNCC | 2 cut(s) | 282, 423 |
| NmuCI | GTSAC | 1 cut(s) | 791 |
| NsiI | ATGCAT | 2 cut(s) | 944, 1321 |
| NspI | RCATGY | 4 cut(s) | 585, 1000, 1339, 1476 |
| PaeI | GCATGC | 1 cut(s) | 1476 |
| PagI | TCATGA | 2 cut(s) | 442, 784 |
| PciI | ACATGT | 1 cut(s) | 1335 |
| PctI | GAATGC | 2 cut(s) | 709, 942 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1281 |
| PfeI | GAWTC | 3 cut(s) | 121, 257, 1061 |
| PkrI | GCNGC | 4 cut(s) | 603, 810, 967, 1545 |
| PleI | GAGTC | 2 cut(s) | 788, 1375 |
| PpsI | GAGTC | 2 cut(s) | 788, 1375 |
| Ppu21I | YACGTR | 1 cut(s) | 30 |
| PscI | ACATGT | 1 cut(s) | 1335 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 2 cut(s) | 282, 423 |
| PspPI | GGNCC | 2 cut(s) | 1265, 1485 |
| PvuII | CAGCTG | 1 cut(s) | 808 |
| RsaI | GTAC | 2 cut(s) | 146, 1145 |
| RsaNI | GTAC | 2 cut(s) | 145, 1144 |
| RseI | CAYNNNNRTG | 4 cut(s) | 32, 278, 783, 789 |
| SaqAI | TTAA | 7 cut(s) | 78, 111, 878, 933, 1374, 1430, 1591 |
| SatI | GCNGC | 4 cut(s) | 602, 809, 966, 1544 |
| Sau3AI | GATC | 5 cut(s) | 45, 471, 871, 1095, 1289 |
| Sau96I | GGNCC | 2 cut(s) | 1265, 1485 |
| SchI | GAGTC | 2 cut(s) | 788, 1376 |
| ScrFI | CCNGG | 2 cut(s) | 156, 846 |
| SduI | GDGCHC | 3 cut(s) | 29, 272, 851 |
| SfaNI | GCATC | 3 cut(s) | 376, 814, 952 |
| SinI | GGWCC | 2 cut(s) | 1265, 1485 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 32, 278, 783, 789 |
| SmlI | CTYRAG | 3 cut(s) | 139, 677, 1429 |
| SmoI | CTYRAG | 3 cut(s) | 139, 677, 1429 |
| SphI | GCATGC | 1 cut(s) | 1476 |
| Sse9I | AATT | 6 cut(s) | 227, 232, 1078, 1162, 1190, 1378 |
| SsiI | CCGC | 3 cut(s) | 947, 1120, 1543 |
| SspI | AATATT | 1 cut(s) | 379 |
| SspMI | CTAG | 5 cut(s) | 416, 765, 837, 1386, 1566 |
| StyD4I | CCNGG | 2 cut(s) | 154, 844 |
| StyI | CCWWGG | 1 cut(s) | 778 |
| TaaI | ACNGT | 1 cut(s) | 1576 |
| TaiI | ACGT | 2 cut(s) | 32, 77 |
| TasI | AATT | 6 cut(s) | 227, 232, 1078, 1162, 1190, 1378 |
| TauI | GCSGC | 1 cut(s) | 1546 |
| TfiI | GAWTC | 3 cut(s) | 121, 257, 1061 |
| Tru1I | TTAA | 7 cut(s) | 78, 111, 878, 933, 1374, 1430, 1591 |
| Tru9I | TTAA | 7 cut(s) | 78, 111, 878, 933, 1374, 1430, 1591 |
| TseFI | GTSAC | 1 cut(s) | 791 |
| TseI | GCWGC | 3 cut(s) | 601, 808, 965 |
| Tsp45I | GTSAC | 1 cut(s) | 791 |
| TspDTI | ATGAA | 8 cut(s) | 43, 80, 120, 330, 342, 892, 938, 1577 |
| Vha464I | CTTAAG | 1 cut(s) | 1429 |
| VneI | GTGCAC | 1 cut(s) | 25 |
| VpaK11BI | GGWCC | 2 cut(s) | 1265, 1485 |
| XapI | RAATTY | 2 cut(s) | 232, 1190 |
| XceI | RCATGY | 4 cut(s) | 585, 1000, 1339, 1476 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 785 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1281 |
| XspI | CTAG | 5 cut(s) | 416, 765, 837, 1386, 1566 |
| Zsp2I | ATGCAT | 2 cut(s) | 944, 1321 |