isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 14 |
| AccI | GTMKAC | 2 cut(s) | 747, 840 |
| AciI | CCGC | 2 cut(s) | 12, 231 |
| AclWI | GGATC | 3 cut(s) | 394, 619, 629 |
| AcsI | RAATTY | 3 cut(s) | 221, 311, 698 |
| AcuI | CTGAAG | 3 cut(s) | 180, 362, 1127 |
| AfaI | GTAC | 1 cut(s) | 497 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 145 |
| AflIII | ACRYGT | 1 cut(s) | 404 |
| AjnI | CCWGG | 2 cut(s) | 607, 1090 |
| AluBI | AGCT | 9 cut(s) | 86, 108, 288, 379, 426, 476, 590, 671, 1144 |
| AluI | AGCT | 9 cut(s) | 86, 108, 288, 379, 426, 476, 590, 671, 1144 |
| Alw26I | GTCTC | 3 cut(s) | 243, 593, 891 |
| AlwI | GGATC | 3 cut(s) | 394, 619, 629 |
| AoxI | GGCC | 2 cut(s) | 1085, 1097 |
| ApeKI | GCWGC | 3 cut(s) | 75, 108, 554 |
| ApoI | RAATTY | 3 cut(s) | 221, 311, 698 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1112 |
| AspA2I | CCTAGG | 1 cut(s) | 1100 |
| AspLEI | GCGC | 1 cut(s) | 907 |
| AspS9I | GGNCC | 1 cut(s) | 915 |
| AsuHPI | GGTGA | 4 cut(s) | 53, 839, 883, 899 |
| AvaII | GGWCC | 1 cut(s) | 915 |
| AvrII | CCTAGG | 1 cut(s) | 1100 |
| BanI | GGYRCC | 1 cut(s) | 14 |
| BanII | GRGCYC | 1 cut(s) | 285 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 731, 763 |
| BbsI | GAAGAC | 1 cut(s) | 698 |
| BbvI | GCAGC | 3 cut(s) | 87, 95, 541 |
| BccI | CCATC | 3 cut(s) | 646, 719, 877 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 206, 240 |
| BciT130I | CCWGG | 2 cut(s) | 609, 1092 |
| BclI | TGATCA | 1 cut(s) | 853 |
| BcoDI | GTCTC | 3 cut(s) | 243, 593, 891 |
| BfaI | CTAG | 6 cut(s) | 195, 528, 668, 1050, 1101, 1122 |
| BisI | GCNGC | 3 cut(s) | 76, 109, 555 |
| BlnI | CCTAGG | 1 cut(s) | 1100 |
| BlpI | GCTNAGC | 1 cut(s) | 284 |
| BlsI | GCNGC | 3 cut(s) | 77, 110, 556 |
| Bme1390I | CCNGG | 2 cut(s) | 609, 1092 |
| Bme18I | GGWCC | 1 cut(s) | 915 |
| BmgT120I | GGNCC | 1 cut(s) | 915 |
| BmiI | GGNNCC | 2 cut(s) | 16, 235 |
| BmrFI | CCNGG | 2 cut(s) | 609, 1092 |
| BmsI | GCATC | 2 cut(s) | 822, 864 |
| BpiI | GAAGAC | 1 cut(s) | 698 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 240, 272 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 284 |
| BsaJI | CCNNGG | 4 cut(s) | 446, 607, 1091, 1100 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 145 |
| Bse1I | ACTGG | 2 cut(s) | 778, 836 |
| BseBI | CCWGG | 2 cut(s) | 609, 1092 |
| BseDI | CCNNGG | 4 cut(s) | 446, 607, 1091, 1100 |
| BseGI | GGATG | 2 cut(s) | 130, 352 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 145 |
| BseMII | CTCAG | 5 cut(s) | 135, 231, 271, 298, 540 |
| BseNI | ACTGG | 2 cut(s) | 778, 836 |
| BseRI | GAGGAG | 1 cut(s) | 907 |
| BseXI | GCAGC | 3 cut(s) | 87, 95, 541 |
| BshFI | GGCC | 2 cut(s) | 1087, 1099 |
| BshNI | GGYRCC | 1 cut(s) | 14 |
| BslFI | GGGAC | 1 cut(s) | 742 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 145 |
| BsmAI | GTCTC | 3 cut(s) | 243, 593, 891 |
| BsmBI | CGTCTC | 1 cut(s) | 891 |
| BsmFI | GGGAC | 1 cut(s) | 742 |
| BsnI | GGCC | 2 cut(s) | 1087, 1099 |
| Bsp1286I | GDGCHC | 1 cut(s) | 285 |
| Bsp143I | GATC | 4 cut(s) | 386, 611, 634, 853 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 284 |
| BspACI | CCGC | 2 cut(s) | 12, 231 |
| BspANI | GGCC | 2 cut(s) | 1087, 1099 |
| BspCNI | CTCAG | 5 cut(s) | 136, 232, 270, 297, 541 |
| BspLI | GGNNCC | 2 cut(s) | 16, 235 |
| BspPI | GGATC | 3 cut(s) | 394, 619, 629 |
| BspT107I | GGYRCC | 1 cut(s) | 14 |
| BsrI | ACTGG | 2 cut(s) | 778, 836 |
| BssECI | CCNNGG | 4 cut(s) | 446, 607, 1091, 1100 |
| BssMI | GATC | 4 cut(s) | 386, 611, 634, 853 |
| BssNAI | GTATAC | 1 cut(s) | 841 |
| BssT1I | CCWWGG | 2 cut(s) | 446, 1100 |
| Bst1107I | GTATAC | 1 cut(s) | 841 |
| Bst2UI | CCWGG | 2 cut(s) | 609, 1092 |
| Bst4CI | ACNGT | 2 cut(s) | 52, 65 |
| Bst6I | CTCTTC | 3 cut(s) | 734, 1103, 1122 |
| BstC8I | GCNNGC | 1 cut(s) | 679 |
| BstDEI | CTNAG | 5 cut(s) | 144, 240, 257, 284, 549 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 143 |
| BstF5I | GGATG | 2 cut(s) | 130, 352 |
| BstHHI | GCGC | 1 cut(s) | 907 |
| BstKTI | GATC | 4 cut(s) | 389, 614, 637, 856 |
| BstMAI | GTCTC | 3 cut(s) | 243, 593, 891 |
| BstMBI | GATC | 4 cut(s) | 386, 611, 634, 853 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 512 |
| BstNI | CCWGG | 2 cut(s) | 609, 1092 |
| BstNSI | RCATGY | 1 cut(s) | 408 |
| BstSCI | CCNGG | 2 cut(s) | 607, 1090 |
| BstV1I | GCAGC | 3 cut(s) | 87, 95, 541 |
| BstV2I | GAAGAC | 1 cut(s) | 698 |
| BstX2I | RGATCY | 1 cut(s) | 611 |
| BstYI | RGATCY | 1 cut(s) | 611 |
| BstZ17I | GTATAC | 1 cut(s) | 841 |
| BsuRI | GGCC | 2 cut(s) | 1087, 1099 |
| BtsCI | GGATG | 2 cut(s) | 130, 352 |
| BtsIMutI | CAGTG | 2 cut(s) | 70, 141 |
| Cac8I | GCNNGC | 1 cut(s) | 679 |
| CfoI | GCGC | 1 cut(s) | 907 |
| Cfr13I | GGNCC | 1 cut(s) | 915 |
| Csp6I | GTAC | 1 cut(s) | 496 |
| CviAII | CATG | 7 cut(s) | 316, 374, 405, 576, 791, 851, 971 |
| CviQI | GTAC | 1 cut(s) | 496 |
| DdeI | CTNAG | 5 cut(s) | 144, 240, 257, 284, 549 |
| DpnI | GATC | 4 cut(s) | 388, 613, 636, 855 |
| DpnII | GATC | 4 cut(s) | 386, 611, 634, 853 |
| Eam1104I | CTCTTC | 3 cut(s) | 734, 1103, 1122 |
| EarI | CTCTTC | 3 cut(s) | 734, 1103, 1122 |
| Eco130I | CCWWGG | 2 cut(s) | 446, 1100 |
| Eco147I | AGGCCT | 2 cut(s) | 1087, 1099 |
| Eco24I | GRGCYC | 1 cut(s) | 285 |
| Eco47I | GGWCC | 1 cut(s) | 915 |
| Eco57I | CTGAAG | 3 cut(s) | 180, 362, 1127 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 143 |
| EcoRI | GAATTC | 2 cut(s) | 311, 698 |
| EcoRII | CCWGG | 2 cut(s) | 607, 1090 |
| EcoT14I | CCWWGG | 2 cut(s) | 446, 1100 |
| EcoT22I | ATGCAT | 1 cut(s) | 852 |
| EcoT38I | GRGCYC | 1 cut(s) | 285 |
| ErhI | CCWWGG | 2 cut(s) | 446, 1100 |
| Esp3I | CGTCTC | 1 cut(s) | 891 |
| FaeI | CATG | 7 cut(s) | 319, 377, 408, 579, 794, 854, 974 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FaqI | GGGAC | 1 cut(s) | 742 |
| FatI | CATG | 7 cut(s) | 315, 373, 404, 575, 790, 850, 970 |
| FbaI | TGATCA | 1 cut(s) | 853 |
| FblI | GTMKAC | 2 cut(s) | 747, 840 |
| Fnu4HI | GCNGC | 3 cut(s) | 76, 109, 555 |
| FokI | GGATG | 2 cut(s) | 137, 359 |
| FriOI | GRGCYC | 1 cut(s) | 285 |
| Fsp4HI | GCNGC | 3 cut(s) | 76, 109, 555 |
| FspBI | CTAG | 6 cut(s) | 195, 528, 668, 1050, 1101, 1122 |
| GlaI | GCGC | 1 cut(s) | 906 |
| GluI | GCNGC | 3 cut(s) | 76, 109, 555 |
| HaeIII | GGCC | 2 cut(s) | 1087, 1099 |
| HhaI | GCGC | 1 cut(s) | 907 |
| Hin1II | CATG | 7 cut(s) | 319, 377, 408, 579, 794, 854, 974 |
| Hin6I | GCGC | 1 cut(s) | 905 |
| HinP1I | GCGC | 1 cut(s) | 905 |
| HincII | GTYRAC | 1 cut(s) | 573 |
| HindII | GTYRAC | 1 cut(s) | 573 |
| HindIII | AAGCTT | 1 cut(s) | 84 |
| HinfI | GANTC | 3 cut(s) | 797, 859, 1043 |
| HpaI | GTTAAC | 1 cut(s) | 573 |
| HphI | GGTGA | 4 cut(s) | 53, 839, 883, 899 |
| Hpy166II | GTNNAC | 3 cut(s) | 573, 748, 841 |
| Hpy188I | TCNGA | 6 cut(s) | 260, 550, 657, 858, 864, 1042 |
| Hpy188III | TCNNGA | 4 cut(s) | 248, 400, 985, 1122 |
| Hpy8I | GTNNAC | 3 cut(s) | 573, 748, 841 |
| HpyAV | CCTTC | 2 cut(s) | 337, 517 |
| HpyCH4III | ACNGT | 2 cut(s) | 52, 65 |
| HpyCH4IV | ACGT | 1 cut(s) | 684 |
| HpyCH4V | TGCA | 7 cut(s) | 75, 367, 677, 770, 850, 877, 1079 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 512 |
| HpyF3I | CTNAG | 5 cut(s) | 144, 240, 257, 284, 549 |
| HpySE526I | ACGT | 1 cut(s) | 684 |
| Hsp92II | CATG | 7 cut(s) | 319, 377, 408, 579, 794, 854, 974 |
| HspAI | GCGC | 1 cut(s) | 905 |
| Ksp22I | TGATCA | 1 cut(s) | 853 |
| KspAI | GTTAAC | 1 cut(s) | 573 |
| Kzo9I | GATC | 4 cut(s) | 386, 611, 634, 853 |
| Lsp1109I | GCAGC | 3 cut(s) | 87, 95, 541 |
| LweI | GCATC | 2 cut(s) | 822, 864 |
| MaeI | CTAG | 6 cut(s) | 195, 528, 668, 1050, 1101, 1122 |
| MaeII | ACGT | 1 cut(s) | 684 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MalI | GATC | 4 cut(s) | 388, 613, 636, 855 |
| MboI | GATC | 4 cut(s) | 386, 611, 634, 853 |
| MflI | RGATCY | 1 cut(s) | 611 |
| MhlI | GDGCHC | 1 cut(s) | 285 |
| MluCI | AATT | 9 cut(s) | 206, 221, 311, 330, 393, 453, 698, 1005, 1014 |
| MlyI | GAGTC | 1 cut(s) | 853 |
| MmeI | TCCRAC | 2 cut(s) | 12, 334 |
| Mph1103I | ATGCAT | 1 cut(s) | 852 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1112 |
| MseI | TTAA | 5 cut(s) | 564, 572, 687, 804, 867 |
| MslI | CAYNNNNRTG | 1 cut(s) | 969 |
| MspR9I | CCNGG | 2 cut(s) | 609, 1092 |
| MvaI | CCWGG | 2 cut(s) | 609, 1092 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 512 |
| NdeII | GATC | 4 cut(s) | 386, 611, 634, 853 |
| NlaIII | CATG | 7 cut(s) | 319, 377, 408, 579, 794, 854, 974 |
| NlaIV | GGNNCC | 2 cut(s) | 16, 235 |
| NsiI | ATGCAT | 1 cut(s) | 852 |
| NspI | RCATGY | 1 cut(s) | 408 |
| PceI | AGGCCT | 2 cut(s) | 1087, 1099 |
| PciI | ACATGT | 1 cut(s) | 404 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1112 |
| PfeI | GAWTC | 2 cut(s) | 797, 1043 |
| PkrI | GCNGC | 3 cut(s) | 77, 110, 556 |
| PleI | GAGTC | 1 cut(s) | 853 |
| PpsI | GAGTC | 1 cut(s) | 853 |
| PscI | ACATGT | 1 cut(s) | 404 |
| Psp6I | CCWGG | 2 cut(s) | 607, 1090 |
| PspGI | CCWGG | 2 cut(s) | 607, 1090 |
| PspN4I | GGNNCC | 2 cut(s) | 16, 235 |
| PspPI | GGNCC | 1 cut(s) | 915 |
| PsuI | RGATCY | 1 cut(s) | 611 |
| RsaI | GTAC | 1 cut(s) | 497 |
| RsaNI | GTAC | 1 cut(s) | 496 |
| RseI | CAYNNNNRTG | 1 cut(s) | 969 |
| SaqAI | TTAA | 5 cut(s) | 564, 572, 687, 804, 867 |
| SatI | GCNGC | 3 cut(s) | 76, 109, 555 |
| Sau3AI | GATC | 4 cut(s) | 386, 611, 634, 853 |
| Sau96I | GGNCC | 1 cut(s) | 915 |
| SchI | GAGTC | 1 cut(s) | 853 |
| ScrFI | CCNGG | 2 cut(s) | 609, 1092 |
| SduI | GDGCHC | 1 cut(s) | 285 |
| SfaNI | GCATC | 2 cut(s) | 822, 864 |
| SinI | GGWCC | 1 cut(s) | 915 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 969 |
| Sse9I | AATT | 9 cut(s) | 206, 221, 311, 330, 393, 453, 698, 1005, 1014 |
| SseBI | AGGCCT | 2 cut(s) | 1087, 1099 |
| SsiI | CCGC | 2 cut(s) | 12, 231 |
| SspI | AATATT | 1 cut(s) | 808 |
| SspMI | CTAG | 6 cut(s) | 195, 528, 668, 1050, 1101, 1122 |
| StuI | AGGCCT | 2 cut(s) | 1087, 1099 |
| StyD4I | CCNGG | 2 cut(s) | 607, 1090 |
| StyI | CCWWGG | 2 cut(s) | 446, 1100 |
| TaaI | ACNGT | 2 cut(s) | 52, 65 |
| TaiI | ACGT | 1 cut(s) | 687 |
| TaqI | TCGA | 5 cut(s) | 182, 247, 389, 641, 723 |
| TasI | AATT | 9 cut(s) | 206, 221, 311, 330, 393, 453, 698, 1005, 1014 |
| TfiI | GAWTC | 2 cut(s) | 797, 1043 |
| Tru1I | TTAA | 5 cut(s) | 564, 572, 687, 804, 867 |
| Tru9I | TTAA | 5 cut(s) | 564, 572, 687, 804, 867 |
| TscAI | CASTG | 2 cut(s) | 70, 148 |
| TseI | GCWGC | 3 cut(s) | 75, 108, 554 |
| TspDTI | ATGAA | 5 cut(s) | 141, 304, 324, 959, 1051 |
| TspRI | CASTG | 2 cut(s) | 70, 148 |
| VpaK11BI | GGWCC | 1 cut(s) | 915 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 143 |
| XapI | RAATTY | 3 cut(s) | 221, 311, 698 |
| XbaI | TCTAGA | 1 cut(s) | 1121 |
| XceI | RCATGY | 1 cut(s) | 408 |
| XmaJI | CCTAGG | 1 cut(s) | 1100 |
| XmiI | GTMKAC | 2 cut(s) | 747, 840 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1112 |
| XspI | CTAG | 6 cut(s) | 195, 528, 668, 1050, 1101, 1122 |
| Zsp2I | ATGCAT | 1 cut(s) | 852 |