isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 461 |
| AarI | CACCTGC | 1 cut(s) | 593 |
| Acc36I | ACCTGC | 2 cut(s) | 18, 593 |
| AccB1I | GGYRCC | 2 cut(s) | 280, 1773 |
| AccII | CGCG | 2 cut(s) | 525, 1589 |
| AciI | CCGC | 4 cut(s) | 812, 830, 1026, 1396 |
| AclWI | GGATC | 1 cut(s) | 480 |
| AcoI | YGGCCR | 3 cut(s) | 1687, 1691, 1753 |
| AcsI | RAATTY | 2 cut(s) | 232, 1160 |
| AcyI | GRCGYC | 1 cut(s) | 1774 |
| AfaI | GTAC | 2 cut(s) | 1115, 1795 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 290, 1093 |
| AflII | CTTAAG | 2 cut(s) | 1091, 1282 |
| AflIII | ACRYGT | 1 cut(s) | 1790 |
| AjnI | CCWGG | 1 cut(s) | 1046 |
| AluBI | AGCT | 3 cut(s) | 619, 1572, 1640 |
| AluI | AGCT | 3 cut(s) | 619, 1572, 1640 |
| Alw21I | GWGCWC | 1 cut(s) | 272 |
| Alw26I | GTCTC | 4 cut(s) | 103, 633, 705, 1418 |
| AlwI | GGATC | 1 cut(s) | 480 |
| AoxI | GGCC | 5 cut(s) | 413, 1679, 1687, 1691, 1753 |
| ApeKI | GCWGC | 3 cut(s) | 604, 1637, 1718 |
| ApoI | RAATTY | 2 cut(s) | 232, 1160 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1258, 1290, 1330, 1362 |
| AseI | ATTAAT | 1 cut(s) | 1505 |
| AspLEI | GCGC | 5 cut(s) | 527, 1281, 1591, 1776, 1801 |
| AspS9I | GGNCC | 1 cut(s) | 1338 |
| AsuHPI | GGTGA | 5 cut(s) | 262, 553, 1173, 1238, 1775 |
| AsuII | TTCGAA | 1 cut(s) | 1705 |
| AvaII | GGWCC | 1 cut(s) | 1338 |
| BanI | GGYRCC | 2 cut(s) | 280, 1773 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 295, 327 |
| BauI | CACGAG | 1 cut(s) | 1732 |
| Bbv12I | GWGCWC | 1 cut(s) | 272 |
| BbvI | GCAGC | 3 cut(s) | 616, 1649, 1730 |
| BccI | CCATC | 4 cut(s) | 497, 785, 1354, 1690 |
| BceAI | ACGGC | 2 cut(s) | 1476, 1537 |
| BciT130I | CCWGG | 1 cut(s) | 1048 |
| BciVI | GTATCC | 1 cut(s) | 851 |
| BclI | TGATCA | 1 cut(s) | 45 |
| BcoDI | GTCTC | 4 cut(s) | 103, 633, 705, 1418 |
| BfaI | CTAG | 4 cut(s) | 156, 768, 1269, 1641 |
| BfmI | CTRYAG | 1 cut(s) | 1716 |
| BfoI | RGCGCY | 1 cut(s) | 1777 |
| BfrI | CTTAAG | 2 cut(s) | 1091, 1282 |
| BfuAI | ACCTGC | 2 cut(s) | 18, 593 |
| BfuI | GTATCC | 1 cut(s) | 851 |
| BisI | GCNGC | 5 cut(s) | 605, 831, 1397, 1638, 1719 |
| BlsI | GCNGC | 5 cut(s) | 606, 832, 1398, 1639, 1720 |
| Bme1390I | CCNGG | 1 cut(s) | 1048 |
| Bme18I | GGWCC | 1 cut(s) | 1338 |
| BmgT120I | GGNCC | 1 cut(s) | 1338 |
| BmiI | GGNNCC | 3 cut(s) | 282, 423, 1775 |
| BmrFI | CCNGG | 1 cut(s) | 1048 |
| BmsI | GCATC | 3 cut(s) | 376, 817, 1624 |
| Bpu14I | TTCGAA | 1 cut(s) | 1705 |
| BpuEI | CTTGAG | 2 cut(s) | 160, 665 |
| BsaHI | GRCGYC | 1 cut(s) | 1774 |
| BsaI | GGTCTC | 2 cut(s) | 103, 633 |
| BsaJI | CCNNGG | 2 cut(s) | 781, 1047 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 289, 319, 1292, 1322, 1355, 1385 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 290, 1093 |
| Bse118I | RCCGGY | 1 cut(s) | 1689 |
| Bse1I | ACTGG | 1 cut(s) | 880 |
| Bse3DI | GCAATG | 1 cut(s) | 1204 |
| BseBI | CCWGG | 1 cut(s) | 1048 |
| BseDI | CCNNGG | 2 cut(s) | 781, 1047 |
| BseGI | GGATG | 6 cut(s) | 10, 196, 337, 832, 1600, 1682 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 290, 1093 |
| BseMI | GCAATG | 1 cut(s) | 1204 |
| BseMII | CTCAG | 1 cut(s) | 1302 |
| BseNI | ACTGG | 1 cut(s) | 880 |
| BseRI | GAGGAG | 2 cut(s) | 1056, 1750 |
| BseX3I | CGGCCG | 1 cut(s) | 1687 |
| BseXI | GCAGC | 3 cut(s) | 616, 1649, 1730 |
| BsgI | GTGCAG | 1 cut(s) | 46 |
| Bsh1236I | CGCG | 2 cut(s) | 525, 1589 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1690 |
| BshFI | GGCC | 5 cut(s) | 415, 1681, 1689, 1693, 1755 |
| BshNI | GGYRCC | 2 cut(s) | 280, 1773 |
| BsiEI | CGRYCG | 1 cut(s) | 1690 |
| BsiHKAI | GWGCWC | 1 cut(s) | 272 |
| BsiSI | CCGG | 2 cut(s) | 1686, 1690 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 290, 1093 |
| BsmAI | GTCTC | 4 cut(s) | 103, 633, 705, 1418 |
| BsmI | GAATGC | 3 cut(s) | 712, 807, 1042 |
| BsnI | GGCC | 5 cut(s) | 415, 1681, 1689, 1693, 1755 |
| Bso31I | GGTCTC | 2 cut(s) | 103, 633 |
| Bsp119I | TTCGAA | 1 cut(s) | 1705 |
| Bsp1286I | GDGCHC | 1 cut(s) | 272 |
| Bsp143I | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| Bsp19I | CCATGG | 1 cut(s) | 781 |
| BspACI | CCGC | 4 cut(s) | 812, 830, 1026, 1396 |
| BspANI | GGCC | 5 cut(s) | 415, 1681, 1689, 1693, 1755 |
| BspCNI | CTCAG | 1 cut(s) | 1303 |
| BspFNI | CGCG | 2 cut(s) | 525, 1589 |
| BspHI | TCATGA | 2 cut(s) | 442, 787 |
| BspLI | GGNNCC | 3 cut(s) | 282, 423, 1775 |
| BspMAI | CTGCAG | 1 cut(s) | 1720 |
| BspMI | ACCTGC | 2 cut(s) | 18, 593 |
| BspPI | GGATC | 1 cut(s) | 480 |
| BspT104I | TTCGAA | 1 cut(s) | 1705 |
| BspT107I | GGYRCC | 2 cut(s) | 280, 1773 |
| BspTI | CTTAAG | 2 cut(s) | 1091, 1282 |
| BspTNI | GGTCTC | 2 cut(s) | 103, 633 |
| BsrDI | GCAATG | 1 cut(s) | 1204 |
| BsrFI | RCCGGY | 1 cut(s) | 1689 |
| BsrI | ACTGG | 1 cut(s) | 880 |
| BssAI | RCCGGY | 1 cut(s) | 1689 |
| BssECI | CCNNGG | 2 cut(s) | 781, 1047 |
| BssMI | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| BssNI | GRCGYC | 1 cut(s) | 1774 |
| BssSI | CACGAG | 1 cut(s) | 1732 |
| BssT1I | CCWWGG | 1 cut(s) | 781 |
| Bst2BI | CACGAG | 1 cut(s) | 1732 |
| Bst2UI | CCWGG | 1 cut(s) | 1048 |
| Bst4CI | ACNGT | 2 cut(s) | 1032, 1429 |
| Bst6I | CTCTTC | 1 cut(s) | 836 |
| BstACI | GRCGYC | 1 cut(s) | 1774 |
| BstAFI | CTTAAG | 2 cut(s) | 1091, 1282 |
| BstBI | TTCGAA | 1 cut(s) | 1705 |
| BstC8I | GCNNGC | 2 cut(s) | 1327, 1691 |
| BstDEI | CTNAG | 2 cut(s) | 599, 1311 |
| BstDSI | CCRYGG | 1 cut(s) | 781 |
| BstF5I | GGATG | 6 cut(s) | 10, 196, 337, 832, 1600, 1682 |
| BstFNI | CGCG | 2 cut(s) | 525, 1589 |
| BstH2I | RGCGCY | 1 cut(s) | 1777 |
| BstHHI | GCGC | 5 cut(s) | 527, 1281, 1591, 1776, 1801 |
| BstKTI | GATC | 4 cut(s) | 48, 475, 1018, 1468 |
| BstMAI | GTCTC | 4 cut(s) | 103, 633, 705, 1418 |
| BstMBI | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| BstMCI | CGRYCG | 1 cut(s) | 1690 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1497 |
| BstNI | CCWGG | 1 cut(s) | 1048 |
| BstNSI | RCATGY | 2 cut(s) | 865, 1329 |
| BstSCI | CCNGG | 1 cut(s) | 1046 |
| BstSFI | CTRYAG | 1 cut(s) | 1716 |
| BstUI | CGCG | 2 cut(s) | 525, 1589 |
| BstV1I | GCAGC | 3 cut(s) | 616, 1649, 1730 |
| BstZI | CGGCCG | 1 cut(s) | 1687 |
| BsuI | GTATCC | 1 cut(s) | 851 |
| BsuRI | GGCC | 5 cut(s) | 415, 1681, 1689, 1693, 1755 |
| BtgI | CCRYGG | 1 cut(s) | 781 |
| BtsCI | GGATG | 6 cut(s) | 10, 196, 337, 832, 1600, 1682 |
| BtsIMutI | CAGTG | 2 cut(s) | 369, 1461 |
| BveI | ACCTGC | 2 cut(s) | 18, 593 |
| Cac8I | GCNNGC | 2 cut(s) | 1327, 1691 |
| CciI | TCATGA | 2 cut(s) | 442, 787 |
| CfoI | GCGC | 5 cut(s) | 527, 1281, 1591, 1776, 1801 |
| Cfr10I | RCCGGY | 1 cut(s) | 1689 |
| Cfr13I | GGNCC | 1 cut(s) | 1338 |
| Csp6I | GTAC | 2 cut(s) | 1114, 1794 |
| CviQI | GTAC | 2 cut(s) | 1114, 1794 |
| DdeI | CTNAG | 2 cut(s) | 599, 1311 |
| DinI | GGCGCC | 1 cut(s) | 1775 |
| DpnI | GATC | 4 cut(s) | 47, 474, 1017, 1467 |
| DpnII | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| DraI | TTTAAA | 1 cut(s) | 226 |
| EaeI | YGGCCR | 3 cut(s) | 1687, 1691, 1753 |
| EagI | CGGCCG | 1 cut(s) | 1687 |
| Eam1104I | CTCTTC | 1 cut(s) | 836 |
| EarI | CTCTTC | 1 cut(s) | 836 |
| EclXI | CGGCCG | 1 cut(s) | 1687 |
| Eco130I | CCWWGG | 1 cut(s) | 781 |
| Eco31I | GGTCTC | 2 cut(s) | 103, 633 |
| Eco47I | GGWCC | 1 cut(s) | 1338 |
| Eco52I | CGGCCG | 1 cut(s) | 1687 |
| EcoRI | GAATTC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 1046 |
| EcoT14I | CCWWGG | 1 cut(s) | 781 |
| EcoT22I | ATGCAT | 1 cut(s) | 809 |
| EgeI | GGCGCC | 1 cut(s) | 1775 |
| EheI | GGCGCC | 1 cut(s) | 1775 |
| ErhI | CCWWGG | 1 cut(s) | 781 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 582, 614 |
| FbaI | TGATCA | 1 cut(s) | 45 |
| Fnu4HI | GCNGC | 5 cut(s) | 605, 831, 1397, 1638, 1719 |
| FokI | GGATG | 6 cut(s) | 17, 203, 344, 839, 1587, 1669 |
| FseI | GGCCGGCC | 1 cut(s) | 1693 |
| Fsp4HI | GCNGC | 5 cut(s) | 605, 831, 1397, 1638, 1719 |
| FspBI | CTAG | 4 cut(s) | 156, 768, 1269, 1641 |
| GlaI | GCGC | 5 cut(s) | 526, 1280, 1590, 1775, 1800 |
| GluI | GCNGC | 5 cut(s) | 605, 831, 1397, 1638, 1719 |
| HaeII | RGCGCY | 1 cut(s) | 1777 |
| HaeIII | GGCC | 5 cut(s) | 415, 1681, 1689, 1693, 1755 |
| HapII | CCGG | 2 cut(s) | 1686, 1690 |
| HhaI | GCGC | 5 cut(s) | 527, 1281, 1591, 1776, 1801 |
| Hin1I | GRCGYC | 1 cut(s) | 1774 |
| Hin6I | GCGC | 5 cut(s) | 525, 1279, 1589, 1774, 1799 |
| HinP1I | GCGC | 5 cut(s) | 525, 1279, 1589, 1774, 1799 |
| HincII | GTYRAC | 1 cut(s) | 1144 |
| HindII | GTYRAC | 1 cut(s) | 1144 |
| HindIII | AAGCTT | 1 cut(s) | 617 |
| HinfI | GANTC | 6 cut(s) | 121, 257, 926, 1061, 1250, 1580 |
| HpaII | CCGG | 2 cut(s) | 1686, 1690 |
| HphI | GGTGA | 5 cut(s) | 262, 553, 1173, 1238, 1775 |
| Hpy166II | GTNNAC | 5 cut(s) | 580, 1114, 1144, 1338, 1794 |
| Hpy188I | TCNGA | 7 cut(s) | 502, 646, 931, 1312, 1359, 1447, 1808 |
| Hpy188III | TCNNGA | 6 cut(s) | 59, 443, 682, 788, 1058, 1128 |
| Hpy8I | GTNNAC | 5 cut(s) | 580, 1114, 1144, 1338, 1794 |
| HpyAV | CCTTC | 4 cut(s) | 479, 751, 1312, 1718 |
| HpyCH4III | ACNGT | 2 cut(s) | 1032, 1429 |
| HpyCH4IV | ACGT | 2 cut(s) | 74, 1790 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1497 |
| HpyF3I | CTNAG | 2 cut(s) | 599, 1311 |
| HpySE526I | ACGT | 2 cut(s) | 74, 1790 |
| Hsp92I | GRCGYC | 1 cut(s) | 1774 |
| HspAI | GCGC | 5 cut(s) | 525, 1279, 1589, 1774, 1799 |
| KasI | GGCGCC | 1 cut(s) | 1773 |
| KroI | GCCGGC | 1 cut(s) | 1689 |
| KroNI | GCCGGC | 1 cut(s) | 1691 |
| Ksp22I | TGATCA | 1 cut(s) | 45 |
| Kzo9I | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| LmnI | GCTCC | 2 cut(s) | 267, 427 |
| Lsp1109I | GCAGC | 3 cut(s) | 616, 1649, 1730 |
| LweI | GCATC | 3 cut(s) | 376, 817, 1624 |
| MaeI | CTAG | 4 cut(s) | 156, 768, 1269, 1641 |
| MaeII | ACGT | 2 cut(s) | 74, 1790 |
| MaeIII | GTNAC | 3 cut(s) | 1000, 1009, 1541 |
| MalI | GATC | 4 cut(s) | 47, 474, 1017, 1467 |
| MboI | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| MboII | GAAGA | 6 cut(s) | 342, 544, 853, 892, 1387, 1643 |
| MfeI | CAATTG | 1 cut(s) | 1261 |
| MhlI | GDGCHC | 1 cut(s) | 272 |
| MluCI | AATT | 9 cut(s) | 115, 227, 232, 943, 1132, 1160, 1261, 1502, 1506 |
| Mly113I | GGCGCC | 1 cut(s) | 1774 |
| MlyI | GAGTC | 1 cut(s) | 1259 |
| MmeI | TCCRAC | 1 cut(s) | 1501 |
| Mph1103I | ATGCAT | 1 cut(s) | 809 |
| MroNI | GCCGGC | 1 cut(s) | 1689 |
| MslI | CAYNNNNRTG | 4 cut(s) | 278, 786, 1192, 1515 |
| MspA1I | CMGCKG | 1 cut(s) | 1026 |
| MspCI | CTTAAG | 2 cut(s) | 1091, 1282 |
| MspI | CCGG | 2 cut(s) | 1686, 1690 |
| MspR9I | CCNGG | 1 cut(s) | 1048 |
| MunI | CAATTG | 1 cut(s) | 1261 |
| Mva1269I | GAATGC | 3 cut(s) | 712, 807, 1042 |
| MvaI | CCWGG | 1 cut(s) | 1048 |
| MvnI | CGCG | 2 cut(s) | 525, 1589 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1497 |
| NaeI | GCCGGC | 1 cut(s) | 1691 |
| NarI | GGCGCC | 1 cut(s) | 1774 |
| NcoI | CCATGG | 1 cut(s) | 781 |
| NdeII | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| NgoMIV | GCCGGC | 1 cut(s) | 1689 |
| NlaIV | GGNNCC | 3 cut(s) | 282, 423, 1775 |
| NmeAIII | GCCGAG | 1 cut(s) | 1273 |
| NmuCI | GTSAC | 1 cut(s) | 1000 |
| NsiI | ATGCAT | 1 cut(s) | 809 |
| NspI | RCATGY | 2 cut(s) | 865, 1329 |
| NspV | TTCGAA | 1 cut(s) | 1705 |
| PaeI | GCATGC | 1 cut(s) | 1329 |
| PagI | TCATGA | 2 cut(s) | 442, 787 |
| PaqCI | CACCTGC | 1 cut(s) | 593 |
| PctI | GAATGC | 3 cut(s) | 712, 807, 1042 |
| PdiI | GCCGGC | 1 cut(s) | 1691 |
| PfeI | GAWTC | 5 cut(s) | 121, 257, 926, 1061, 1580 |
| PkrI | GCNGC | 5 cut(s) | 606, 832, 1398, 1639, 1720 |
| PleI | GAGTC | 1 cut(s) | 1258 |
| PluTI | GGCGCC | 1 cut(s) | 1777 |
| PpsI | GAGTC | 1 cut(s) | 1258 |
| PshBI | ATTAAT | 1 cut(s) | 1505 |
| PsiI | TTATAA | 1 cut(s) | 461 |
| Psp6I | CCWGG | 1 cut(s) | 1046 |
| PspGI | CCWGG | 1 cut(s) | 1046 |
| PspN4I | GGNNCC | 3 cut(s) | 282, 423, 1775 |
| PspPI | GGNCC | 1 cut(s) | 1338 |
| PstI | CTGCAG | 1 cut(s) | 1720 |
| RigI | GGCCGGCC | 1 cut(s) | 1693 |
| RsaI | GTAC | 2 cut(s) | 1115, 1795 |
| RsaNI | GTAC | 2 cut(s) | 1114, 1794 |
| RseI | CAYNNNNRTG | 4 cut(s) | 278, 786, 1192, 1515 |
| SatI | GCNGC | 5 cut(s) | 605, 831, 1397, 1638, 1719 |
| Sau3AI | GATC | 4 cut(s) | 45, 472, 1015, 1465 |
| Sau96I | GGNCC | 1 cut(s) | 1338 |
| SchI | GAGTC | 1 cut(s) | 1259 |
| ScrFI | CCNGG | 1 cut(s) | 1048 |
| SduI | GDGCHC | 1 cut(s) | 272 |
| SfaNI | GCATC | 3 cut(s) | 376, 817, 1624 |
| SfcI | CTRYAG | 1 cut(s) | 1716 |
| SfoI | GGCGCC | 1 cut(s) | 1775 |
| SfuI | TTCGAA | 1 cut(s) | 1705 |
| SinI | GGWCC | 1 cut(s) | 1338 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 278, 786, 1192, 1515 |
| SmlI | CTYRAG | 4 cut(s) | 139, 680, 1091, 1282 |
| SmoI | CTYRAG | 4 cut(s) | 139, 680, 1091, 1282 |
| SphI | GCATGC | 1 cut(s) | 1329 |
| Sse9I | AATT | 9 cut(s) | 115, 227, 232, 943, 1132, 1160, 1261, 1502, 1506 |
| SsiI | CCGC | 4 cut(s) | 812, 830, 1026, 1396 |
| SspDI | GGCGCC | 1 cut(s) | 1773 |
| SspI | AATATT | 1 cut(s) | 379 |
| SspMI | CTAG | 4 cut(s) | 156, 768, 1269, 1641 |
| StyD4I | CCNGG | 1 cut(s) | 1046 |
| StyI | CCWWGG | 1 cut(s) | 781 |
| TaaI | ACNGT | 2 cut(s) | 1032, 1429 |
| TaiI | ACGT | 2 cut(s) | 77, 1793 |
| TaqI | TCGA | 3 cut(s) | 135, 1018, 1705 |
| TasI | AATT | 9 cut(s) | 115, 227, 232, 943, 1132, 1160, 1261, 1502, 1506 |
| TatI | WGTACW | 1 cut(s) | 1793 |
| TauI | GCSGC | 2 cut(s) | 833, 1399 |
| TfiI | GAWTC | 5 cut(s) | 121, 257, 926, 1061, 1580 |
| TscAI | CASTG | 2 cut(s) | 369, 1461 |
| TseFI | GTSAC | 1 cut(s) | 1000 |
| TseI | GCWGC | 3 cut(s) | 604, 1637, 1718 |
| Tsp45I | GTSAC | 1 cut(s) | 1000 |
| TspRI | CASTG | 2 cut(s) | 369, 1461 |
| Vha464I | CTTAAG | 2 cut(s) | 1091, 1282 |
| VpaK11BI | GGWCC | 1 cut(s) | 1338 |
| VspI | ATTAAT | 1 cut(s) | 1505 |
| XapI | RAATTY | 2 cut(s) | 232, 1160 |
| XceI | RCATGY | 2 cut(s) | 865, 1329 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 788 |
| XspI | CTAG | 4 cut(s) | 156, 768, 1269, 1641 |
| Zsp2I | ATGCAT | 1 cut(s) | 809 |