Rmu_sc0003830.1_g000005

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003830.1
OG0000043
Physical Location & Seq
Forward (+)
24170 .. 30786
6617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003830.1_g000005.1.cds

Sequence Viewer

Length: 2331 bp
atggctgagcctctggtggctaggtgcctttactctggcaaaggttatgtgattcctttgaatcaatgtatgacctactctgagttgtatgaagacattttccgtacattccagttttttccaagtgatgttattgagcttcagtattcagttcctggttgtgaagtttgttttcttcgtaacgatcgtgatttccagatgatgttttacgctgctagaatacataagttagaatgtgttgagatttctgttttaaagattggtggaaggtgcagcagagcttgttcagtggatagttgttcggaagttgttgataaagaagattatttgggggaggcattcagactgaagttcacaagacgtatttgtctgatgagtggatttcttatattcatcatgtcggggagaagtttcatggtgctgccgagctccgagagaagctcaggaagtatgcaattgcagttggactcaaaagctcaagctttgggatccaaggttgtcaagacttgcattgctgctgatgttagctataatctttcattgaagccaagggagattataagcatgttcaaatcaacatatgggtttgatatttcctacaaggttgccttgaaagcaaagcatagggctaaggaagcgatttatggttccgatgtagaccctttcagcaagttatcttggtataaggaagttgttttgcagagtaacccgggctcttcttttgtgttggaagttgacccatctactcatcattttcagaggcttttcgtagcttacggaggttgtgttgaaggcttccaattctgtttgcctgtgttctcacctctactactagtgtactcaccggccttcgacgagtctggtccggcctccgcttcatccggcgatgccgaaaaatggcccacgtgccgatacacaggtacccagaattttctctgggcacccaaaccttcttctctgtggagacctatcacctacagcaacacaatcgccgcaacccagcccaccactatacccataaccatcatacccttccctccttttctttccactacagccaccgccctcgaccgctaccgcctaatgcctgggcttaataggtccacccagagtactccttatcggcaacaaaaagtaaaaccctttatccccaagctgaagcagatcttgcaaatcgagcttgaccggaaggtttccggggaagtggataaccacgaggcaaccattcttcctgatgacctccagcgcgaagcgacggcgggtgaggtcgtagaatatgtgcaaaaagtggaggacgatcgtaccaatgcaaaaagcctccatgccattcgtcagaggtccatttccgaatccctagtctcctaccaccaccgctcccaatcagaggtccatttccgaatccctgatgacctggatctgctccagaatcccttcgacgaccatccaacagctccaaggatcttggctctgaagatgacatcttctgcacctacatggacatcgagaagcttggatccaagctcgaagatggatcctcagcccccaaatctgactaatgccaccgggttgttgcaagtggatactggccggtgtggagagaaacgccgaggagttacatattcctctactgagaaggaataccgtttcaatttgcggttgctaagagcatttggtggtgccgatattattgaccattttcttgctgaaatccctgtggaaaattggtgccgtgcattttatactaactgccgatatggaattatggtaaatgggattgttaaatcattcaactcttggattgtaattgagcgtttgatgccggtctattgtatgctggatcagaccagaataaaacaaatggagcagataggtgagaggagggatgaggcacaacgttggaccacagaactaactcccaaaatggaggaaagattgaaggtgcagatggagaaatctcgtcgtttcagtgtccattattctagccctagagtttacgagatcaattgttttccttgtcctcaaggccttgctgcaatacaagctgcctctgaaaatgtctatgattatattgataagtactttcatgatgatatgttcaagaagagctacagttttcccatccggccgataaccaatgttgatatgtcttattctgaatctgctactgactgtatattacctccccttgcgaagaggccacccaggaggcctagcgtgaagcggttcaagtcggttagggaggttggaaagaagatgattcgttgtggccgttgcggcaaaatgggcactcataacaagttgagctgcacagaaccttttgttcagcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

776

Amino Acids

88.43

Weight (kDa)

8.78

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27871 FvH4_1g29590 FvH4_1g29591 FvH4_1g29862 FvH4_2g00085 FvH4_2g02783 FvH4_2g02910 FvH4_2g18181 FvH4_2g24333 FvH4_3g06732 FvH4_3g17131 FvH4_3g20061 FvH4_3g20062 FvH4_3g24441 FvH4_3g24443 FvH4_3g24443 FvH4_3g24500 FvH4_3g24740 FvH4_3g25230 FvH4_3g26060 FvH4_3g27583 FvH4_3g32421 FvH4_3g35812 FvH4_3g38841 FvH4_3g40971 FvH4_3g44613 FvH4_3g44614 FvH4_3g44615 FvH4_4g04920 FvH4_4g07822 FvH4_4g08151 FvH4_4g08160 FvH4_4g08531 FvH4_4g09200 FvH4_4g09692 FvH4_4g10062 FvH4_4g10530 FvH4_5g03091 FvH4_5g03092 FvH4_5g06862 FvH4_5g06863 FvH4_5g07920 FvH4_5g17871 FvH4_5g17872 FvH4_5g23321 FvH4_5g24281 FvH4_5g24391 FvH4_5g28463 FvH4_5g34083 FvH4_6g06701 FvH4_6g20107 FvH4_6g20143 FvH4_6g22012 FvH4_6g22551 FvH4_6g31341 FvH4_6g33561 FvH4_6g33592 FvH4_6g34232 FvH4_6g34233 FvH4_6g37972 FvH4_6g37972 FvH4_6g37972 FvH4_6g39191 FvH4_6g39681 FvH4_6g45872 FvH4_7g01581 FvH4_7g02154 FvH4_7g03472 FvH4_7g07292 FvH4_7g07293 FvH4_7g20282 FvH4_7g30371
malus_domestica MD01G1221900.v1.1 MD03G1052700.v1.1 MD05G1118500.v1.1 MD10G1135700.v1.1 MD11G1161900.v1.1 MD12G1093400.v1.1 MD15G1409800.v1.1 MD16G1228000.v1.1
pyrus_communis pycom03g04970 pycom08g16190 pycom09g07650 pycom10g14400 pycom11g09170 pycom11g11100 pycom11g11120 pycom11g13240 pycom11g21780 pycom12g16560 pycom13g08440 pycom14g00770 pycom14g07540 pycom17g09330
rosa_chinensis RchiOBHm_Chr1g0318421 RchiOBHm_Chr1g0318431 RchiOBHm_Chr1g0327211 RchiOBHm_Chr1g0334951 RchiOBHm_Chr1g0343051 RchiOBHm_Chr1g0347471 RchiOBHm_Chr2g0084481 RchiOBHm_Chr2g0095011 RchiOBHm_Chr2g0096851 RchiOBHm_Chr2g0127961 RchiOBHm_Chr2g0130281 RchiOBHm_Chr2g0133091 RchiOBHm_Chr2g0173591 RchiOBHm_Chr3g0453251 RchiOBHm_Chr4g0384731 RchiOBHm_Chr4g0384871 RchiOBHm_Chr4g0422481 RchiOBHm_Chr5g0012141 RchiOBHm_Chr5g0019851 RchiOBHm_Chr5g0038651 RchiOBHm_Chr5g0042901 RchiOBHm_Chr5g0043951 RchiOBHm_Chr6g0253561 RchiOBHm_Chr7g0213551 RchiOBHm_Chr7g0220031 RchiOBHm_Chr7g0221581 RchiOBHm_Chr7g0230091 RchiOBHm_Chr7g0235291
rosa_laevigata RLG00000001336 RLG00000002469 RLG00000008084 RLG00000009350 RLG00000012956 RLG00000014177 RLG00000016845 RLG00000017722 RLG00000018937 RLG00000018957 RLG00000031697 RLG00000032070 RLG00000034648
rosa_multiflora Rmu_co8164630.1_g000001 Rmu_co8485123.1_g000001 Rmu_sc0000023.1_g000003 Rmu_sc0000068.1_g000010 Rmu_sc0000084.1_g000004 Rmu_sc0000186.1_g000020 Rmu_sc0000258.1_g000043 Rmu_sc0000305.1_g000013 Rmu_sc0000305.1_g000014 Rmu_sc0000340.1_g000040 Rmu_sc0000452.1_g000008 Rmu_sc0000470.1_g000022 Rmu_sc0000570.1_g000013 Rmu_sc0000570.1_g000014 Rmu_sc0000765.1_g000038 Rmu_sc0000774.1_g000029 Rmu_sc0000805.1_g000011 Rmu_sc0000830.1_g000067 Rmu_sc0000831.1_g000008 Rmu_sc0000918.1_g000005 Rmu_sc0000982.1_g000024 Rmu_sc0000982.1_g000025 Rmu_sc0001035.1_g000071 Rmu_sc0001035.1_g000072 Rmu_sc0001068.1_g000017 Rmu_sc0001136.1_g000015 Rmu_sc0001136.1_g000016 Rmu_sc0001386.1_g000028 Rmu_sc0001417.1_g000009 Rmu_sc0001598.1_g000010 Rmu_sc0001886.1_g000001 Rmu_sc0002129.1_g000043 Rmu_sc0002162.1_g000012 Rmu_sc0002252.1_g000006 Rmu_sc0002321.1_g000003 Rmu_sc0002344.1_g000013 Rmu_sc0002344.1_g000015 Rmu_sc0002592.1_g000004 Rmu_sc0002592.1_g000005 Rmu_sc0002691.1_g000042 Rmu_sc0002786.1_g000023 Rmu_sc0002845.1_g000019 Rmu_sc0002968.1_g000022 Rmu_sc0002988.1_g000001 Rmu_sc0003131.1_g000015 Rmu_sc0003180.1_g000017 Rmu_sc0003275.1_g000005 Rmu_sc0003275.1_g000075 Rmu_sc0003337.1_g000008 Rmu_sc0003830.1_g000005 Rmu_sc0004032.1_g000018 Rmu_sc0004277.1_g000068 Rmu_sc0004366.1_g000003 Rmu_sc0004371.1_g000005 Rmu_sc0004413.1_g000040 Rmu_sc0004898.1_g000009 Rmu_sc0004898.1_g000010 Rmu_sc0004929.1_g000002 Rmu_sc0005065.1_g000007 Rmu_sc0005065.1_g000008 Rmu_sc0005261.1_g000010 Rmu_sc0005375.1_g000019 Rmu_sc0005497.1_g000012 Rmu_sc0005704.1_g000001 Rmu_sc0005834.1_g000013 Rmu_sc0006076.1_g000004 Rmu_sc0006311.1_g000010 Rmu_sc0006669.1_g000018 Rmu_sc0006720.1_g000005 Rmu_sc0006841.1_g000002 Rmu_sc0006854.1_g000004 Rmu_sc0006854.1_g000005 Rmu_sc0006999.1_g000008 Rmu_sc0007415.1_g000001 Rmu_sc0007415.1_g000031 Rmu_sc0007650.1_g000004 Rmu_sc0007754.1_g000003 Rmu_sc0007912.1_g000004 Rmu_sc0007912.1_g000005 Rmu_sc0008429.1_g000004 Rmu_sc0009780.1_g000018 Rmu_sc0010062.1_g000002 Rmu_sc0010104.1_g000001 Rmu_sc0010647.1_g000002 Rmu_sc0010824.1_g000009 Rmu_sc0011112.1_g000010 Rmu_sc0013354.1_g000004 Rmu_sc0014685.1_g000005 Rmu_sc0014685.1_g000006 Rmu_sc0014882.1_g000002 Rmu_sc0019879.1_g000004 Rmu_sc0020359.1_g000006 Rmu_sc0020945.1_g000003 Rmu_sc0023467.1_g000001 Rmu_sc0025019.1_g000001 Rmu_sc0026446.1_g000002 Rmu_sc0027500.1_g000001 Rmu_sc0027830.1_g000001 Rmu_sc0028318.1_g000001 Rmu_sc0028858.1_g000002 Rmu_sc0031772.1_g000001 Rmu_sc0032192.1_g000001 Rmu_sc0033789.1_g000001 Rmu_sc0034922.1_g000001 Rmu_ssc0000295.1_g000057 Rmu_ssc0000309.1_g000034 Rmu_ssc0000420.1_g000035 Rmu_ssc0000423.1_g000017 Rmu_ssc0000470.1_g000004
rosa_roxburghii Rroxscaffold_1G00016870 Rroxscaffold_1G00024230 Rroxscaffold_1G00037110 Rroxscaffold_1G00037130 Rroxscaffold_2G00137090 Rroxscaffold_2G00137100 Rroxscaffold_3G00221680 Rroxscaffold_3G00224180 Rroxscaffold_3G00226070 Rroxscaffold_4G00291380 Rroxscaffold_4G00293060 Rroxscaffold_4G00319010 Rroxscaffold_5G00347090 Rroxscaffold_5G00355090 Rroxscaffold_5G00356950 Rroxscaffold_7G00193500 Rroxscaffold_7G00207010 Rroxscaffold_7G00207130 Rroxscaffold_7G00207140
rosa_rugosa Rorug01G0086400.1 Rorug01G0087900 Rorug01G0095400 Rorug01G0105300 Rorug01G0107000 Rorug01G0152600.1 Rorug01G0152700.1 Rorug02G0010200 Rorug02G0010200 Rorug02G0157800 Rorug02G0157900 Rorug02G0248300 Rorug02G0249100 Rorug02G0249200 Rorug02G0277800 Rorug02G0277900 Rorug02G0324700 Rorug02G0330600 Rorug02G0510200 Rorug03G0162000 Rorug03G0171700 Rorug03G0189100 Rorug03G0267900 Rorug03G0339000 Rorug04G0012700 Rorug04G0050900 Rorug04G0152300 Rorug04G0283700 Rorug05G0043600 Rorug05G0151200 Rorug05G0152700 Rorug05G0158400 Rorug05G0209100 Rorug05G0209100 Rorug05G0224900 Rorug05G0227700 Rorug05G0244300.1 Rorug05G0251800 Rorug05G0293600 Rorug05G0335900 Rorug05G0582400 Rorug06G0045400 Rorug06G0063700 Rorug06G0082300 Rorug06G0173900 Rorug06G0190800 Rorug06G0480100 Rorug07G0057100 Rorug07G0117700 Rorug07G0148300 Rorug07G0190900
rosa_samantha Rh1BG184600 Rh1CG100800 Rh1CG353300 Rh1DG147400 Rh1DG214200 Rh2AG491700 Rh2BG022000 Rh2BG196400 Rh2BG209900 Rh2BG331800 Rh2CG478100 Rh2DG096100 Rh2DG303100 Rh3AG125300 Rh3AG335300 Rh3BG274800 Rh3CG243100 Rh3CG243200 Rh3CG243300 Rh3CG365100 Rh3CG369400 Rh3DG341600 Rh3DG370500 Rh4AG060300 Rh4AG088400 Rh4AG357100 Rh4CG308700 Rh4CG440700 Rh4DG362800 Rh4DG421700 Rh5AG182900 Rh5AG284500 Rh5AG293500 Rh5AG440000 Rh5AG445200 Rh5AG512000 Rh5AG522000 Rh5BG294100 Rh5BG301500 Rh5BG347300 Rh5CG103200 Rh5CG155400 Rh5CG212800 Rh5CG231400 Rh5CG253700 Rh5CG329100 Rh5CG471500 Rh5DG304000 Rh5DG310700 Rh5DG466000 Rh6AG473800 Rh6BG022600 Rh6BG120300 Rh6BG292800 Rh6CG118500 Rh6CG366400 Rh6DG106900 Rh7BG324000 Rh7BG382800 Rh7DG221900 Rh7DG256900 Rh7DG259800 Rh7DG259900 Rh7DG329400 Rh7DG329500 Rh7DG351700 Rh7DG351800
rosa_wichuraiana Rw0G008220 Rw0G010100 Rw0G011420 Rw0G017230 Rw0G017240 Rw0G023340 Rw1G007820 Rw1G019090 Rw1G019100 Rw1G026940 Rw2G002550 Rw2G018570 Rw2G021650 Rw2G024850 Rw2G036390 Rw2G041200 Rw2G042490 Rw3G024200 Rw3G027660 Rw3G029100 Rw3G029110 Rw4G005930 Rw4G010720 Rw4G014560 Rw4G017210 Rw4G020740 Rw5G003740 Rw5G008130 Rw5G011060 Rw5G012210 Rw5G014240 Rw5G015950 Rw5G016590 Rw5G017570 Rw5G019040 Rw5G027200 Rw5G030010 Rw5G036030 Rw6G001380 Rw6G001420 Rw6G006520 Rw6G007020 Rw6G009200 Rw6G009300 Rw6G020110 Rw6G023690 Rw6G030650 Rw6G041310 Rw7G005190 Rw7G012150 Rw7G014860 Rw7G014870 Rw7G020130 Rw7G024500 Rw7G029450 Rw7G029460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AasI GACNNNNNNGTC 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 920
AccB1I GGYRCC 5 cut(s) 24, 920, 940, 1676, 1725
AccBSI CCGCTC 1 cut(s) 1374
AccI GTMKAC 1 cut(s) 657
AccII CGCG 1 cut(s) 1248
AclI AACGTT 1 cut(s) 1894
AclWI GGATC 9 cut(s) 483, 496, 1422, 1466, 1508, 1521, 1526, 1539, 1845
AcoI YGGCCR 3 cut(s) 1585, 2123, 2266
AcsI RAATTY 1 cut(s) 928
AcuI CTGAAG 4 cut(s) 125, 368, 1178, 1490
AcvI CACGTG 1 cut(s) 906
AfaI GTAC 6 cut(s) 106, 839, 922, 1114, 1303, 2078
AfiI CCNNNNNNNGG 2 cut(s) 897, 1384
AhlI ACTAGT 1 cut(s) 832
AjnI CCWGG 4 cut(s) 154, 1087, 1410, 2201
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 958, 1363
AlwI GGATC 9 cut(s) 483, 496, 1422, 1466, 1508, 1521, 1526, 1539, 1845
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 709
AoxI GGCC 9 cut(s) 846, 867, 899, 1585, 2023, 2123, 2195, 2207, 2266
ApeKI GCWGC 7 cut(s) 212, 273, 421, 515, 2030, 2042, 2304
ApoI RAATTY 1 cut(s) 928
ArsI GACNNNNNNTTYG 2 cut(s) 1341, 1373
Asp700I GAANNNNTTC 2 cut(s) 1430, 2222
Asp718I GGTACC 1 cut(s) 920
AspLEI GCGC 1 cut(s) 1248
AspS9I GGNCC 6 cut(s) 863, 900, 1101, 1338, 1387, 1899
AsuC2I CCSGG 4 cut(s) 710, 711, 1198, 1564
AsuHPI GGTGA 5 cut(s) 813, 834, 964, 1274, 1883
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 5 cut(s) 863, 1101, 1338, 1387, 1899
BaeGI GKGCMC 2 cut(s) 943, 2288
BaeI ACNNNNGTAYC 6 cut(s) 904, 904, 937, 937, 1285, 1318
BamHI GGATCC 3 cut(s) 488, 1513, 1531
BanI GGYRCC 5 cut(s) 24, 920, 940, 1676, 1725
BanII GRGCYC 2 cut(s) 431, 716
BauI CACGAG 1 cut(s) 1214
BbrPI CACGTG 1 cut(s) 906
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 1536
BbvI GCAGC 7 cut(s) 199, 285, 408, 502, 2017, 2029, 2291
BccI CCATC 6 cut(s) 748, 1031, 1449, 1522, 1939, 2126
BceAI ACGGC 3 cut(s) 1272, 1713, 2253
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 4 cut(s) 156, 1089, 1412, 2203
BciVI GTATCC 1 cut(s) 1573
BcnI CCSGG 4 cut(s) 710, 711, 1198, 1564
BcoDI GTCTC 2 cut(s) 958, 1363
BcuI ACTAGT 1 cut(s) 832
BfaI CTAG 7 cut(s) 21, 216, 833, 1355, 1980, 1986, 2211
BfmI CTRYAG 3 cut(s) 976, 1053, 2107
BfuI GTATCC 1 cut(s) 1573
BglI GCCNNNNNGGC 1 cut(s) 2274
BglII AGATCT 1 cut(s) 1164
BisI GCNGC 9 cut(s) 213, 274, 422, 516, 993, 2031, 2043, 2275, 2305
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 9 cut(s) 214, 275, 423, 517, 994, 2032, 2044, 2276, 2306
BmcAI AGTACT 2 cut(s) 1114, 2078
Bme1390I CCNGG 8 cut(s) 156, 710, 711, 1089, 1198, 1412, 1564, 2203
Bme18I GGWCC 5 cut(s) 863, 1101, 1338, 1387, 1899
BmeT110I CYCGRG 1 cut(s) 709
BmgT120I GGNCC 6 cut(s) 863, 900, 1101, 1338, 1387, 1899
BmiI GGNNCC 9 cut(s) 26, 490, 649, 922, 942, 1515, 1533, 1678, 1727
BmrFI CCNGG 8 cut(s) 156, 710, 711, 1089, 1198, 1412, 1564, 2203
BmsI GCATC 2 cut(s) 877, 1806
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 2 cut(s) 1226, 1406
Bpu10I CCTNAGC 3 cut(s) 442, 630, 1536
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 462, 2004
BpuMI CCSGG 4 cut(s) 710, 711, 1198, 1564
BsaAI YACGTR 1 cut(s) 906
BsaI GGTCTC 1 cut(s) 958
BsaJI CCNNGG 8 cut(s) 492, 548, 709, 1088, 1197, 1454, 1606, 2201
BsaWI WCCGGW 1 cut(s) 1185
BsaXI ACNNNNNCTCC 4 cut(s) 771, 801, 1358, 1388
Bsc4I CCNNNNNNNGG 2 cut(s) 897, 1384
Bse118I RCCGGY 3 cut(s) 844, 1587, 1819
Bse1I ACTGG 2 cut(s) 112, 1588
Bse3DI GCAATG 1 cut(s) 510
BseBI CCWGG 4 cut(s) 156, 1089, 1412, 2203
BseDI CCNNGG 8 cut(s) 492, 548, 709, 1088, 1197, 1454, 1606, 2201
BseGI GGATG 4 cut(s) 878, 1441, 1888, 2118
BseLI CCNNNNNNNGG 2 cut(s) 897, 1384
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 4 cut(s) 72, 456, 1550, 1620
BseNI ACTGG 2 cut(s) 112, 1588
BseRI GAGGAG 2 cut(s) 1623, 1891
BseSI GKGCMC 2 cut(s) 943, 2288
BseX3I CGGCCG 1 cut(s) 2123
BseXI GCAGC 7 cut(s) 199, 285, 408, 502, 2017, 2029, 2291
BseYI CCCAGC 1 cut(s) 999
BsgI GTGCAG 4 cut(s) 292, 1470, 1961, 2290
Bsh1236I CGCG 1 cut(s) 1248
Bsh1285I CGRYCG 4 cut(s) 187, 1072, 1300, 2126
BshFI GGCC 9 cut(s) 848, 869, 901, 1587, 2025, 2125, 2197, 2209, 2268
BshNI GGYRCC 5 cut(s) 24, 920, 940, 1676, 1725
BsiEI CGRYCG 4 cut(s) 187, 1072, 1300, 2126
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 709
BslI CCNNNNNNNGG 2 cut(s) 897, 1384
BsmAI GTCTC 2 cut(s) 958, 1363
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 9 cut(s) 848, 869, 901, 1587, 2025, 2125, 2197, 2209, 2268
Bso31I GGTCTC 1 cut(s) 958
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 4 cut(s) 431, 716, 943, 2288
Bsp1720I GCTNAGC 1 cut(s) 6
BspANI GGCC 9 cut(s) 848, 869, 901, 1587, 2025, 2125, 2197, 2209, 2268
BspCNI CTCAG 4 cut(s) 73, 455, 1549, 1621
BspFNI CGCG 1 cut(s) 1248
BspHI TCATGA 1 cut(s) 2083
BspLI GGNNCC 9 cut(s) 26, 490, 649, 922, 942, 1515, 1533, 1678, 1727
BspPI GGATC 9 cut(s) 483, 496, 1422, 1466, 1508, 1521, 1526, 1539, 1845
BspQI GCTCTTC 2 cut(s) 721, 2096
BspT107I GGYRCC 5 cut(s) 24, 920, 940, 1676, 1725
BspTNI GGTCTC 1 cut(s) 958
BsrBI CCGCTC 1 cut(s) 1374
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 3 cut(s) 844, 1587, 1819
BsrI ACTGG 2 cut(s) 112, 1588
BssAI RCCGGY 3 cut(s) 844, 1587, 1819
BssECI CCNNGG 8 cut(s) 492, 548, 709, 1088, 1197, 1454, 1606, 2201
BssSI CACGAG 1 cut(s) 1214
BssT1I CCWWGG 3 cut(s) 492, 548, 1454
Bst2BI CACGAG 1 cut(s) 1214
Bst2UI CCWGG 4 cut(s) 156, 1089, 1412, 2203
Bst4CI ACNGT 3 cut(s) 1643, 2111, 2171
Bst6I CTCTTC 3 cut(s) 721, 2096, 2186
BstAPI GCANNNNNTGC 1 cut(s) 1168
BstBAI YACGTR 1 cut(s) 906
BstDEI CTNAG 7 cut(s) 6, 81, 442, 630, 1536, 1629, 1661
BstF5I GGATG 4 cut(s) 878, 1441, 1888, 2118
BstFNI CGCG 1 cut(s) 1248
BstHHI GCGC 1 cut(s) 1248
BstMAI GTCTC 2 cut(s) 958, 1363
BstMCI CGRYCG 4 cut(s) 187, 1072, 1300, 2126
BstMWI GCNNNNNNNGC 8 cut(s) 614, 635, 1168, 1177, 1816, 2039, 2274, 2283
BstNI CCWGG 4 cut(s) 156, 1089, 1412, 2203
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 8 cut(s) 154, 708, 709, 1087, 1196, 1410, 1562, 2201
BstSFI CTRYAG 3 cut(s) 976, 1053, 2107
BstSLI GKGCMC 2 cut(s) 943, 2288
BstUI CGCG 1 cut(s) 1248
BstV1I GCAGC 7 cut(s) 199, 285, 408, 502, 2017, 2029, 2291
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 6 cut(s) 488, 1164, 1414, 1458, 1513, 1531
BstYI RGATCY 6 cut(s) 488, 1164, 1414, 1458, 1513, 1531
BstZI CGGCCG 1 cut(s) 2123
BsuI GTATCC 1 cut(s) 1573
BsuRI GGCC 9 cut(s) 848, 869, 901, 1587, 2025, 2125, 2197, 2209, 2268
BtgZI GCGATG 1 cut(s) 900
BtsCI GGATG 4 cut(s) 878, 1441, 1888, 2118
BtsIMutI CAGTG 2 cut(s) 294, 1972
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 2083
CfoI GCGC 1 cut(s) 1248
Cfr10I RCCGGY 3 cut(s) 844, 1587, 1819
Cfr13I GGNCC 6 cut(s) 863, 900, 1101, 1338, 1387, 1899
Cfr9I CCCGGG 1 cut(s) 709
Csp6I GTAC 6 cut(s) 105, 838, 921, 1113, 1302, 2077
CviAII CATG 6 cut(s) 397, 415, 565, 1322, 1494, 2084
CviQI GTAC 6 cut(s) 105, 838, 921, 1113, 1302, 2077
DdeI CTNAG 7 cut(s) 6, 81, 442, 630, 1536, 1629, 1661
DraI TTTAAA 1 cut(s) 255
DrdI GACNNNNNNGTC 1 cut(s) 366
DseDI GACNNNNNNGTC 1 cut(s) 366
EaeI YGGCCR 3 cut(s) 1585, 2123, 2266
EagI CGGCCG 1 cut(s) 2123
Eam1104I CTCTTC 3 cut(s) 721, 2096, 2186
EarI CTCTTC 3 cut(s) 721, 2096, 2186
Ecl136II GAGCTC 1 cut(s) 429
EclXI CGGCCG 1 cut(s) 2123
Eco130I CCWWGG 3 cut(s) 492, 548, 1454
Eco147I AGGCCT 2 cut(s) 2025, 2209
Eco24I GRGCYC 2 cut(s) 431, 716
Eco31I GGTCTC 1 cut(s) 958
Eco47I GGWCC 5 cut(s) 863, 1101, 1338, 1387, 1899
Eco52I CGGCCG 1 cut(s) 2123
Eco53kI GAGCTC 1 cut(s) 429
Eco57I CTGAAG 4 cut(s) 125, 368, 1178, 1490
Eco72I CACGTG 1 cut(s) 906
Eco88I CYCGRG 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 429
EcoRII CCWGG 4 cut(s) 154, 1087, 1410, 2201
EcoT14I CCWWGG 3 cut(s) 492, 548, 1454
EcoT38I GRGCYC 2 cut(s) 431, 716
ErhI CCWWGG 3 cut(s) 492, 548, 1454
FaeI CATG 6 cut(s) 400, 418, 568, 1325, 1497, 2087
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 1151, 1183
FatI CATG 6 cut(s) 396, 414, 564, 1321, 1493, 2083
FauI CCCGC 1 cut(s) 1252
FauNDI CATATG 1 cut(s) 580
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 9 cut(s) 213, 274, 422, 516, 993, 2031, 2043, 2275, 2305
FokI GGATG 4 cut(s) 865, 1428, 1895, 2105
FriOI GRGCYC 2 cut(s) 431, 716
Fsp4HI GCNGC 9 cut(s) 213, 274, 422, 516, 993, 2031, 2043, 2275, 2305
FspBI CTAG 7 cut(s) 21, 216, 833, 1355, 1980, 1986, 2211
GlaI GCGC 1 cut(s) 1247
GluI GCNGC 9 cut(s) 213, 274, 422, 516, 993, 2031, 2043, 2275, 2305
GsaI CCCAGC 1 cut(s) 1003
GsuI CTGGAG 2 cut(s) 1226, 1406
HaeIII GGCC 9 cut(s) 848, 869, 901, 1587, 2025, 2125, 2197, 2209, 2268
HhaI GCGC 1 cut(s) 1248
Hin1II CATG 6 cut(s) 400, 418, 568, 1325, 1497, 2087
Hin6I GCGC 1 cut(s) 1246
HinP1I GCGC 1 cut(s) 1246
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 2 cut(s) 480, 1507
HinfI GANTC 9 cut(s) 52, 61, 467, 857, 1349, 1398, 1426, 2156, 2257
HphI GGTGA 5 cut(s) 813, 834, 964, 1274, 1883
Hpy166II GTNNAC 6 cut(s) 354, 658, 736, 838, 1104, 1993
Hpy188III TCNNGA 9 cut(s) 188, 196, 444, 502, 1232, 1423, 1503, 2084, 2098
Hpy8I GTNNAC 6 cut(s) 354, 658, 736, 838, 1104, 1993
Hpy99I CGWCG 4 cut(s) 857, 1258, 1439, 1962
HpyAV CCTTC 9 cut(s) 261, 785, 859, 960, 1042, 1183, 1441, 1627, 1930
HpyCH4III ACNGT 3 cut(s) 1643, 2111, 2171
HpyCH4IV ACGT 3 cut(s) 361, 905, 1894
HpyF10VI GCNNNNNNNGC 8 cut(s) 614, 635, 1168, 1177, 1816, 2039, 2274, 2283
HpyF3I CTNAG 7 cut(s) 6, 81, 442, 630, 1536, 1629, 1661
HpySE526I ACGT 3 cut(s) 361, 905, 1894
Hsp92II CATG 6 cut(s) 400, 418, 568, 1325, 1497, 2087
HspAI GCGC 1 cut(s) 1246
KpnI GGTACC 1 cut(s) 924
LguI GCTCTTC 2 cut(s) 721, 2096
LmnI GCTCC 5 cut(s) 434, 1379, 1425, 1456, 1861
Lsp1109I GCAGC 7 cut(s) 199, 285, 408, 502, 2017, 2029, 2291
LweI GCATC 2 cut(s) 877, 1806
MaeI CTAG 7 cut(s) 21, 216, 833, 1355, 1980, 1986, 2211
MaeII ACGT 3 cut(s) 361, 905, 1894
MaeIII GTNAC 3 cut(s) 179, 704, 1612
MbiI CCGCTC 1 cut(s) 1374
MfeI CAATTG 2 cut(s) 455, 2002
MflI RGATCY 6 cut(s) 488, 1164, 1414, 1458, 1513, 1531
MhlI GDGCHC 4 cut(s) 431, 716, 943, 2288
MluCI AATT 8 cut(s) 455, 800, 928, 1648, 1720, 1758, 1803, 2002
MlyI GAGTC 2 cut(s) 461, 866
MmeI TCCRAC 5 cut(s) 444, 708, 1469, 1877, 2224
MroXI GAANNNNTTC 2 cut(s) 1430, 2222
MseI TTAA 3 cut(s) 254, 1095, 1779
MslI CAYNNNNRTG 1 cut(s) 1492
MspR9I CCNGG 8 cut(s) 156, 710, 711, 1089, 1198, 1412, 1564, 2203
MunI CAATTG 2 cut(s) 455, 2002
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 4 cut(s) 156, 1089, 1412, 2203
MvnI CGCG 1 cut(s) 1248
MwoI GCNNNNNNNGC 8 cut(s) 614, 635, 1168, 1177, 1816, 2039, 2274, 2283
NciI CCSGG 4 cut(s) 710, 711, 1198, 1564
NdeI CATATG 1 cut(s) 580
NlaIII CATG 6 cut(s) 400, 418, 568, 1325, 1497, 2087
NlaIV GGNNCC 9 cut(s) 26, 490, 649, 922, 942, 1515, 1533, 1678, 1727
NmeAIII GCCGAG 2 cut(s) 450, 1631
NspI RCATGY 1 cut(s) 568
PagI TCATGA 1 cut(s) 2083
PceI AGGCCT 2 cut(s) 2025, 2209
PciSI GCTCTTC 2 cut(s) 721, 2096
PcsI WCGNNNNNNNCGW 2 cut(s) 184, 2266
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 2 cut(s) 1430, 2222
PfeI GAWTC 7 cut(s) 52, 61, 1349, 1398, 1426, 2156, 2257
PkrI GCNGC 9 cut(s) 214, 275, 423, 517, 994, 2032, 2044, 2276, 2306
Ple19I CGATCG 2 cut(s) 187, 1300
PleI GAGTC 2 cut(s) 461, 865
PmaCI CACGTG 1 cut(s) 906
PmlI CACGTG 1 cut(s) 906
PpsI GAGTC 2 cut(s) 461, 865
Ppu21I YACGTR 1 cut(s) 906
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 431
Psp1406I AACGTT 1 cut(s) 1894
Psp6I CCWGG 4 cut(s) 154, 1087, 1410, 2201
PspCI CACGTG 1 cut(s) 906
PspFI CCCAGC 1 cut(s) 999
PspGI CCWGG 4 cut(s) 154, 1087, 1410, 2201
PspN4I GGNNCC 9 cut(s) 26, 490, 649, 922, 942, 1515, 1533, 1678, 1727
PspPI GGNCC 6 cut(s) 863, 900, 1101, 1338, 1387, 1899
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 6 cut(s) 488, 1164, 1414, 1458, 1513, 1531
PvuI CGATCG 2 cut(s) 187, 1300
RsaI GTAC 6 cut(s) 106, 839, 922, 1114, 1303, 2078
RsaNI GTAC 6 cut(s) 105, 838, 921, 1113, 1302, 2077
RseI CAYNNNNRTG 1 cut(s) 1492
SacI GAGCTC 1 cut(s) 431
SapI GCTCTTC 2 cut(s) 721, 2096
SaqAI TTAA 3 cut(s) 254, 1095, 1779
SatI GCNGC 9 cut(s) 213, 274, 422, 516, 993, 2031, 2043, 2275, 2305
Sau96I GGNCC 6 cut(s) 863, 900, 1101, 1338, 1387, 1899
ScaI AGTACT 2 cut(s) 1114, 2078
SchI GAGTC 2 cut(s) 461, 866
ScrFI CCNGG 8 cut(s) 156, 710, 711, 1089, 1198, 1412, 1564, 2203
SduI GDGCHC 4 cut(s) 431, 716, 943, 2288
SfaNI GCATC 2 cut(s) 877, 1806
SfcI CTRYAG 3 cut(s) 976, 1053, 2107
SinI GGWCC 5 cut(s) 863, 1101, 1338, 1387, 1899
SmaI CCCGGG 1 cut(s) 711
SmiMI CAYNNNNRTG 1 cut(s) 1492
SmlI CTYRAG 2 cut(s) 477, 2019
SmoI CTYRAG 2 cut(s) 477, 2019
SpeI ACTAGT 1 cut(s) 832
Sse9I AATT 8 cut(s) 455, 800, 928, 1648, 1720, 1758, 1803, 2002
SseBI AGGCCT 2 cut(s) 2025, 2209
SspMI CTAG 7 cut(s) 21, 216, 833, 1355, 1980, 1986, 2211
SstI GAGCTC 1 cut(s) 431
StuI AGGCCT 2 cut(s) 2025, 2209
StyD4I CCNGG 8 cut(s) 154, 708, 709, 1087, 1196, 1410, 1562, 2201
StyI CCWWGG 3 cut(s) 492, 548, 1454
TaaI ACNGT 3 cut(s) 1643, 2111, 2171
TaiI ACGT 3 cut(s) 364, 908, 1897
TaqI TCGA 6 cut(s) 852, 1068, 1176, 1434, 1502, 1523
TasI AATT 8 cut(s) 455, 800, 928, 1648, 1720, 1758, 1803, 2002
TatI WGTACW 3 cut(s) 837, 1112, 2076
TauI GCSGC 2 cut(s) 995, 2277
TfiI GAWTC 7 cut(s) 52, 61, 1349, 1398, 1426, 2156, 2257
Tru1I TTAA 3 cut(s) 254, 1095, 1779
Tru9I TTAA 3 cut(s) 254, 1095, 1779
TscAI CASTG 2 cut(s) 294, 1972
TseI GCWGC 7 cut(s) 212, 273, 421, 515, 2030, 2042, 2304
TspDTI ATGAA 6 cut(s) 105, 382, 403, 528, 867, 2072
TspGWI ACGGA 2 cut(s) 92, 792
TspMI CCCGGG 1 cut(s) 709
TspRI CASTG 2 cut(s) 294, 1972
VpaK11BI GGWCC 5 cut(s) 863, 1101, 1338, 1387, 1899
XapI RAATTY 1 cut(s) 928
XceI RCATGY 1 cut(s) 568
XmaI CCCGGG 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 2 cut(s) 1430, 2222
XspI CTAG 7 cut(s) 21, 216, 833, 1355, 1980, 1986, 2211
ZrmI AGTACT 2 cut(s) 1114, 2078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.