isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 106, 653 |
| AciI | CCGC | 1 cut(s) | 876 |
| AclWI | GGATC | 2 cut(s) | 89, 102 |
| AcoI | YGGCCR | 1 cut(s) | 479 |
| AcsI | RAATTY | 1 cut(s) | 823 |
| AfaI | GTAC | 2 cut(s) | 594, 733 |
| AflIII | ACRYGT | 2 cut(s) | 239, 797 |
| AjnI | CCWGG | 1 cut(s) | 856 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 73, 105, 147, 179 |
| AluBI | AGCT | 8 cut(s) | 22, 39, 87, 134, 262, 343, 697, 761 |
| AluI | AGCT | 8 cut(s) | 22, 39, 87, 134, 262, 343, 697, 761 |
| AlwI | GGATC | 2 cut(s) | 89, 102 |
| AoxI | GGCC | 5 cut(s) | 426, 479, 850, 862, 921 |
| ApeKI | GCWGC | 3 cut(s) | 19, 121, 697 |
| ApoI | RAATTY | 1 cut(s) | 823 |
| AseI | ATTAAT | 1 cut(s) | 725 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 877 |
| AspA2I | CCTAGG | 1 cut(s) | 865 |
| AspS9I | GGNCC | 1 cut(s) | 426 |
| AsuC2I | CCSGG | 1 cut(s) | 281 |
| AsuHPI | GGTGA | 2 cut(s) | 631, 882 |
| AvrII | CCTAGG | 1 cut(s) | 865 |
| BaeGI | GKGCMC | 1 cut(s) | 943 |
| BalI | TGGCCA | 1 cut(s) | 481 |
| BamHI | GGATCC | 1 cut(s) | 94 |
| BanII | GRGCYC | 1 cut(s) | 286 |
| BbsI | GAAGAC | 1 cut(s) | 794 |
| BbvI | GCAGC | 3 cut(s) | 31, 108, 684 |
| BccI | CCATC | 3 cut(s) | 318, 448, 883 |
| BceAI | ACGGC | 1 cut(s) | 908 |
| BciT130I | CCWGG | 1 cut(s) | 858 |
| BcnI | CCSGG | 1 cut(s) | 281 |
| BfaI | CTAG | 2 cut(s) | 866, 917 |
| BfmI | CTRYAG | 1 cut(s) | 762 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 929 |
| BisI | GCNGC | 3 cut(s) | 20, 122, 698 |
| BlnI | CCTAGG | 1 cut(s) | 865 |
| BlsI | GCNGC | 3 cut(s) | 21, 123, 699 |
| BmcAI | AGTACT | 1 cut(s) | 733 |
| Bme1390I | CCNGG | 2 cut(s) | 281, 858 |
| BmgT120I | GGNCC | 1 cut(s) | 426 |
| BmiI | GGNNCC | 2 cut(s) | 96, 219 |
| BmrFI | CCNGG | 2 cut(s) | 281, 858 |
| BmsI | GCATC | 1 cut(s) | 498 |
| BpiI | GAAGAC | 1 cut(s) | 794 |
| Bpu10I | CCTNAGC | 1 cut(s) | 200 |
| BpuEI | CTTGAG | 1 cut(s) | 542 |
| BpuMI | CCSGG | 1 cut(s) | 281 |
| BsaBI | GATNNNNATC | 1 cut(s) | 458 |
| BsaJI | CCNNGG | 3 cut(s) | 98, 856, 865 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 341, 371 |
| Bse1I | ACTGG | 2 cut(s) | 450, 600 |
| Bse3DI | GCAATG | 1 cut(s) | 116 |
| Bse8I | GATNNNNATC | 1 cut(s) | 458 |
| BseBI | CCWGG | 1 cut(s) | 858 |
| BseDI | CCNNGG | 3 cut(s) | 98, 856, 865 |
| BseJI | GATNNNNATC | 1 cut(s) | 458 |
| BseMI | GCAATG | 1 cut(s) | 116 |
| BseMII | CTCAG | 1 cut(s) | 14 |
| BseNI | ACTGG | 2 cut(s) | 450, 600 |
| BseSI | GKGCMC | 1 cut(s) | 943 |
| BseXI | GCAGC | 3 cut(s) | 31, 108, 684 |
| BsgI | GTGCAG | 1 cut(s) | 38 |
| BshFI | GGCC | 5 cut(s) | 428, 481, 852, 864, 923 |
| BsiSI | CCGG | 1 cut(s) | 280 |
| BsnI | GGCC | 5 cut(s) | 428, 481, 852, 864, 923 |
| Bsp1286I | GDGCHC | 2 cut(s) | 286, 943 |
| Bsp143I | GATC | 2 cut(s) | 94, 585 |
| BspACI | CCGC | 1 cut(s) | 876 |
| BspANI | GGCC | 5 cut(s) | 428, 481, 852, 864, 923 |
| BspCNI | CTCAG | 1 cut(s) | 15 |
| BspLI | GGNNCC | 2 cut(s) | 96, 219 |
| BspPI | GGATC | 2 cut(s) | 89, 102 |
| BspQI | GCTCTTC | 2 cut(s) | 291, 751 |
| BsrDI | GCAATG | 1 cut(s) | 116 |
| BsrI | ACTGG | 2 cut(s) | 450, 600 |
| BssECI | CCNNGG | 3 cut(s) | 98, 856, 865 |
| BssMI | GATC | 2 cut(s) | 94, 585 |
| BssT1I | CCWWGG | 2 cut(s) | 98, 865 |
| Bst2UI | CCWGG | 1 cut(s) | 858 |
| Bst4CI | ACNGT | 1 cut(s) | 766 |
| Bst6I | CTCTTC | 4 cut(s) | 291, 444, 535, 751 |
| BstDEI | CTNAG | 2 cut(s) | 23, 200 |
| BstKTI | GATC | 2 cut(s) | 97, 588 |
| BstMBI | GATC | 2 cut(s) | 94, 585 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 36, 929, 938 |
| BstNI | CCWGG | 1 cut(s) | 858 |
| BstNSI | RCATGY | 2 cut(s) | 243, 801 |
| BstSCI | CCNGG | 2 cut(s) | 279, 856 |
| BstSFI | CTRYAG | 1 cut(s) | 762 |
| BstSLI | GKGCMC | 1 cut(s) | 943 |
| BstV1I | GCAGC | 3 cut(s) | 31, 108, 684 |
| BstV2I | GAAGAC | 1 cut(s) | 794 |
| BstX2I | RGATCY | 1 cut(s) | 94 |
| BstYI | RGATCY | 1 cut(s) | 94 |
| BsuRI | GGCC | 5 cut(s) | 428, 481, 852, 864, 923 |
| Cfr13I | GGNCC | 1 cut(s) | 426 |
| Csp6I | GTAC | 2 cut(s) | 593, 732 |
| CviAII | CATG | 5 cut(s) | 13, 240, 483, 687, 798 |
| CviQI | GTAC | 2 cut(s) | 593, 732 |
| DdeI | CTNAG | 2 cut(s) | 23, 200 |
| DpnI | GATC | 2 cut(s) | 96, 587 |
| DpnII | GATC | 2 cut(s) | 94, 585 |
| EaeI | YGGCCR | 1 cut(s) | 479 |
| Eam1104I | CTCTTC | 4 cut(s) | 291, 444, 535, 751 |
| EarI | CTCTTC | 4 cut(s) | 291, 444, 535, 751 |
| Eco130I | CCWWGG | 2 cut(s) | 98, 865 |
| Eco147I | AGGCCT | 1 cut(s) | 864 |
| Eco24I | GRGCYC | 1 cut(s) | 286 |
| EcoRII | CCWGG | 1 cut(s) | 856 |
| EcoT14I | CCWWGG | 2 cut(s) | 98, 865 |
| EcoT38I | GRGCYC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 2 cut(s) | 98, 865 |
| FaeI | CATG | 5 cut(s) | 16, 243, 486, 690, 801 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 163, 195 |
| FatI | CATG | 5 cut(s) | 12, 239, 482, 686, 797 |
| Fnu4HI | GCNGC | 3 cut(s) | 20, 122, 698 |
| FriOI | GRGCYC | 1 cut(s) | 286 |
| Fsp4HI | GCNGC | 3 cut(s) | 20, 122, 698 |
| FspBI | CTAG | 2 cut(s) | 866, 917 |
| GluI | GCNGC | 3 cut(s) | 20, 122, 698 |
| HaeIII | GGCC | 5 cut(s) | 428, 481, 852, 864, 923 |
| HapII | CCGG | 1 cut(s) | 280 |
| Hin1II | CATG | 5 cut(s) | 16, 243, 486, 690, 801 |
| HincII | GTYRAC | 2 cut(s) | 306, 795 |
| HindII | GTYRAC | 2 cut(s) | 306, 795 |
| HindIII | AAGCTT | 1 cut(s) | 85 |
| HinfI | GANTC | 4 cut(s) | 72, 432, 811, 912 |
| HpaII | CCGG | 1 cut(s) | 280 |
| HphI | GGTGA | 2 cut(s) | 631, 882 |
| Hpy166II | GTNNAC | 2 cut(s) | 306, 795 |
| Hpy188I | TCNGA | 4 cut(s) | 222, 705, 810, 888 |
| Hpy188III | TCNNGA | 3 cut(s) | 42, 69, 753 |
| Hpy8I | GTNNAC | 2 cut(s) | 306, 795 |
| HpyAV | CCTTC | 2 cut(s) | 355, 557 |
| HpyCH4III | ACNGT | 1 cut(s) | 766 |
| HpyCH4V | TGCA | 7 cut(s) | 19, 52, 58, 116, 511, 844, 962 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 36, 929, 938 |
| HpyF3I | CTNAG | 2 cut(s) | 23, 200 |
| Hsp92II | CATG | 5 cut(s) | 16, 243, 486, 690, 801 |
| Kzo9I | GATC | 2 cut(s) | 94, 585 |
| LguI | GCTCTTC | 2 cut(s) | 291, 751 |
| LpnPI | CCDG | 8 cut(s) | 293, 431, 442, 581, 655, 690, 843, 870 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 108, 684 |
| LweI | GCATC | 1 cut(s) | 498 |
| MaeI | CTAG | 2 cut(s) | 866, 917 |
| MalI | GATC | 2 cut(s) | 96, 587 |
| MboI | GATC | 2 cut(s) | 94, 585 |
| MboII | GAAGA | 7 cut(s) | 238, 278, 461, 552, 768, 794, 797 |
| MfeI | CAATTG | 1 cut(s) | 53 |
| MflI | RGATCY | 1 cut(s) | 94 |
| MhlI | GDGCHC | 2 cut(s) | 286, 943 |
| MlsI | TGGCCA | 1 cut(s) | 481 |
| MluCI | AATT | 4 cut(s) | 53, 370, 513, 823 |
| MluNI | TGGCCA | 1 cut(s) | 481 |
| MlyI | GAGTC | 1 cut(s) | 66 |
| MmeI | TCCRAC | 1 cut(s) | 278 |
| Mox20I | TGGCCA | 1 cut(s) | 481 |
| MroXI | GAANNNNTTC | 1 cut(s) | 877 |
| MscI | TGGCCA | 1 cut(s) | 481 |
| MseI | TTAA | 3 cut(s) | 500, 530, 725 |
| Msp20I | TGGCCA | 1 cut(s) | 481 |
| MspA1I | CMGCKG | 1 cut(s) | 22 |
| MspI | CCGG | 1 cut(s) | 280 |
| MspR9I | CCNGG | 2 cut(s) | 281, 858 |
| MunI | CAATTG | 1 cut(s) | 53 |
| MvaI | CCWGG | 1 cut(s) | 858 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 36, 929, 938 |
| NciI | CCSGG | 1 cut(s) | 281 |
| NdeII | GATC | 2 cut(s) | 94, 585 |
| NlaIII | CATG | 5 cut(s) | 16, 243, 486, 690, 801 |
| NlaIV | GGNNCC | 2 cut(s) | 96, 219 |
| NspI | RCATGY | 2 cut(s) | 243, 801 |
| PceI | AGGCCT | 1 cut(s) | 864 |
| PciI | ACATGT | 2 cut(s) | 239, 797 |
| PciSI | GCTCTTC | 2 cut(s) | 291, 751 |
| PdmI | GAANNNNTTC | 1 cut(s) | 877 |
| PfeI | GAWTC | 3 cut(s) | 432, 811, 912 |
| PkrI | GCNGC | 3 cut(s) | 21, 123, 699 |
| PleI | GAGTC | 1 cut(s) | 66 |
| PpsI | GAGTC | 1 cut(s) | 66 |
| PscI | ACATGT | 2 cut(s) | 239, 797 |
| PshBI | ATTAAT | 1 cut(s) | 725 |
| PsiI | TTATAA | 2 cut(s) | 106, 653 |
| Psp6I | CCWGG | 1 cut(s) | 856 |
| PspGI | CCWGG | 1 cut(s) | 856 |
| PspN4I | GGNNCC | 2 cut(s) | 96, 219 |
| PspPI | GGNCC | 1 cut(s) | 426 |
| PsuI | RGATCY | 1 cut(s) | 94 |
| PvuII | CAGCTG | 1 cut(s) | 22 |
| RsaI | GTAC | 2 cut(s) | 594, 733 |
| RsaNI | GTAC | 2 cut(s) | 593, 732 |
| SapI | GCTCTTC | 2 cut(s) | 291, 751 |
| SaqAI | TTAA | 3 cut(s) | 500, 530, 725 |
| SatI | GCNGC | 3 cut(s) | 20, 122, 698 |
| Sau3AI | GATC | 2 cut(s) | 94, 585 |
| Sau96I | GGNCC | 1 cut(s) | 426 |
| ScaI | AGTACT | 1 cut(s) | 733 |
| SchI | GAGTC | 1 cut(s) | 66 |
| ScrFI | CCNGG | 2 cut(s) | 281, 858 |
| SduI | GDGCHC | 2 cut(s) | 286, 943 |
| SfaNI | GCATC | 1 cut(s) | 498 |
| SfcI | CTRYAG | 1 cut(s) | 762 |
| SmlI | CTYRAG | 1 cut(s) | 557 |
| SmoI | CTYRAG | 1 cut(s) | 557 |
| Sse9I | AATT | 4 cut(s) | 53, 370, 513, 823 |
| SseBI | AGGCCT | 1 cut(s) | 864 |
| SsiI | CCGC | 1 cut(s) | 876 |
| SspMI | CTAG | 2 cut(s) | 866, 917 |
| StuI | AGGCCT | 1 cut(s) | 864 |
| StyD4I | CCNGG | 2 cut(s) | 279, 856 |
| StyI | CCWWGG | 2 cut(s) | 98, 865 |
| TaaI | ACNGT | 1 cut(s) | 766 |
| TaqI | TCGA | 2 cut(s) | 395, 614 |
| TasI | AATT | 4 cut(s) | 53, 370, 513, 823 |
| TatI | WGTACW | 1 cut(s) | 731 |
| TfiI | GAWTC | 3 cut(s) | 432, 811, 912 |
| Tru1I | TTAA | 3 cut(s) | 500, 530, 725 |
| Tru9I | TTAA | 3 cut(s) | 500, 530, 725 |
| TseI | GCWGC | 3 cut(s) | 19, 121, 697 |
| TspDTI | ATGAA | 1 cut(s) | 239 |
| VspI | ATTAAT | 1 cut(s) | 725 |
| XapI | RAATTY | 1 cut(s) | 823 |
| XceI | RCATGY | 2 cut(s) | 243, 801 |
| XmaJI | CCTAGG | 1 cut(s) | 865 |
| XmnI | GAANNNNTTC | 1 cut(s) | 877 |
| XspI | CTAG | 2 cut(s) | 866, 917 |
| ZrmI | AGTACT | 1 cut(s) | 733 |