isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 773 |
| AccII | CGCG | 3 cut(s) | 353, 445, 456 |
| AccIII | TCCGGA | 1 cut(s) | 477 |
| AciI | CCGC | 6 cut(s) | 54, 351, 428, 577, 666, 713 |
| AclWI | GGATC | 7 cut(s) | 12, 86, 276, 368, 469, 475, 488 |
| AcoI | YGGCCR | 2 cut(s) | 51, 146 |
| AcsI | RAATTY | 1 cut(s) | 126 |
| AdeI | CACNNNGTG | 1 cut(s) | 656 |
| AfaI | GTAC | 7 cut(s) | 134, 196, 341, 642, 649, 664, 837 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 722, 773 |
| AgsI | TTSAA | 4 cut(s) | 284, 565, 791, 826 |
| AhlI | ACTAGT | 1 cut(s) | 235 |
| AjnI | CCWGG | 3 cut(s) | 244, 499, 721 |
| AluBI | AGCT | 6 cut(s) | 31, 103, 323, 680, 770, 815 |
| AluI | AGCT | 6 cut(s) | 31, 103, 323, 680, 770, 815 |
| Alw26I | GTCTC | 1 cut(s) | 52 |
| AlwI | GGATC | 7 cut(s) | 12, 86, 276, 368, 469, 475, 488 |
| Aor13HI | TCCGGA | 1 cut(s) | 477 |
| AoxI | GGCC | 2 cut(s) | 51, 146 |
| ApeKI | GCWGC | 4 cut(s) | 440, 668, 671, 812 |
| ApoI | RAATTY | 1 cut(s) | 126 |
| AseI | ATTAAT | 1 cut(s) | 624 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 279, 543 |
| AspLEI | GCGC | 2 cut(s) | 445, 456 |
| AsuC2I | CCSGG | 1 cut(s) | 800 |
| AsuHPI | GGTGA | 5 cut(s) | 113, 191, 440, 590, 602 |
| BamHI | GGATCC | 1 cut(s) | 480 |
| BbvI | GCAGC | 4 cut(s) | 427, 655, 683, 824 |
| BccI | CCATC | 4 cut(s) | 104, 120, 190, 609 |
| BciT130I | CCWGG | 3 cut(s) | 246, 501, 723 |
| BclI | TGATCA | 2 cut(s) | 211, 229 |
| BcnI | CCSGG | 1 cut(s) | 800 |
| BcoDI | GTCTC | 1 cut(s) | 52 |
| BcuI | ACTAGT | 1 cut(s) | 235 |
| BfaI | CTAG | 2 cut(s) | 236, 654 |
| BfmI | CTRYAG | 2 cut(s) | 253, 669 |
| BisI | GCNGC | 6 cut(s) | 54, 351, 441, 669, 672, 813 |
| BlsI | GCNGC | 6 cut(s) | 55, 352, 442, 670, 673, 814 |
| BmcAI | AGTACT | 2 cut(s) | 196, 642 |
| Bme1390I | CCNGG | 4 cut(s) | 246, 501, 723, 800 |
| BmiI | GGNNCC | 3 cut(s) | 297, 482, 707 |
| BmrFI | CCNGG | 4 cut(s) | 246, 501, 723, 800 |
| BmsI | GCATC | 1 cut(s) | 345 |
| BpmI | CTGGAG | 2 cut(s) | 78, 657 |
| Bpu10I | CCTNAGC | 1 cut(s) | 676 |
| BpuMI | CCSGG | 1 cut(s) | 800 |
| BsaBI | GATNNNNATC | 1 cut(s) | 479 |
| BsaJI | CCNNGG | 4 cut(s) | 245, 500, 744, 799 |
| BsaWI | WCCGGW | 1 cut(s) | 477 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 736, 766 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 722, 773 |
| Bse118I | RCCGGY | 1 cut(s) | 450 |
| Bse1I | ACTGG | 2 cut(s) | 192, 362 |
| Bse3DI | GCAATG | 1 cut(s) | 623 |
| Bse8I | GATNNNNATC | 1 cut(s) | 479 |
| BseAI | TCCGGA | 1 cut(s) | 477 |
| BseBI | CCWGG | 3 cut(s) | 246, 501, 723 |
| BseDI | CCNNGG | 4 cut(s) | 245, 500, 744, 799 |
| BseGI | GGATG | 3 cut(s) | 96, 188, 604 |
| BseJI | GATNNNNATC | 1 cut(s) | 479 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 722, 773 |
| BseMI | GCAATG | 1 cut(s) | 623 |
| BseNI | ACTGG | 2 cut(s) | 192, 362 |
| BseRI | GAGGAG | 3 cut(s) | 308, 326, 727 |
| BseX3I | CGGCCG | 1 cut(s) | 51 |
| BseXI | GCAGC | 4 cut(s) | 427, 655, 683, 824 |
| BseYI | CCCAGC | 1 cut(s) | 31 |
| Bsh1236I | CGCG | 3 cut(s) | 353, 445, 456 |
| Bsh1285I | CGRYCG | 1 cut(s) | 54 |
| BshFI | GGCC | 2 cut(s) | 53, 148 |
| BsiEI | CGRYCG | 1 cut(s) | 54 |
| BsiSI | CCGG | 4 cut(s) | 299, 451, 478, 799 |
| BsiWI | CGTACG | 1 cut(s) | 132 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 722, 773 |
| BsmAI | GTCTC | 1 cut(s) | 52 |
| BsmBI | CGTCTC | 1 cut(s) | 52 |
| BsnI | GGCC | 2 cut(s) | 53, 148 |
| Bsp13I | TCCGGA | 1 cut(s) | 477 |
| Bsp1407I | TGTACA | 1 cut(s) | 339 |
| BspACI | CCGC | 6 cut(s) | 54, 351, 428, 577, 666, 713 |
| BspANI | GGCC | 2 cut(s) | 53, 148 |
| BspEI | TCCGGA | 1 cut(s) | 477 |
| BspFNI | CGCG | 3 cut(s) | 353, 445, 456 |
| BspHI | TCATGA | 2 cut(s) | 226, 829 |
| BspLI | GGNNCC | 3 cut(s) | 297, 482, 707 |
| BspMAI | CTGCAG | 1 cut(s) | 673 |
| BspPI | GGATC | 7 cut(s) | 12, 86, 276, 368, 469, 475, 488 |
| BsrDI | GCAATG | 1 cut(s) | 623 |
| BsrFI | RCCGGY | 1 cut(s) | 450 |
| BsrGI | TGTACA | 1 cut(s) | 339 |
| BsrI | ACTGG | 2 cut(s) | 192, 362 |
| BssAI | RCCGGY | 1 cut(s) | 450 |
| BssECI | CCNNGG | 4 cut(s) | 245, 500, 744, 799 |
| Bst2UI | CCWGG | 3 cut(s) | 246, 501, 723 |
| Bst6I | CTCTTC | 5 cut(s) | 285, 297, 303, 560, 745 |
| BstAUI | TGTACA | 1 cut(s) | 339 |
| BstC8I | GCNNGC | 1 cut(s) | 581 |
| BstDEI | CTNAG | 2 cut(s) | 676, 839 |
| BstDSI | CCRYGG | 1 cut(s) | 744 |
| BstF5I | GGATG | 3 cut(s) | 96, 188, 604 |
| BstFNI | CGCG | 3 cut(s) | 353, 445, 456 |
| BstHHI | GCGC | 2 cut(s) | 445, 456 |
| BstMAI | GTCTC | 1 cut(s) | 52 |
| BstMCI | CGRYCG | 1 cut(s) | 54 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 451, 665, 677, 712 |
| BstNI | CCWGG | 3 cut(s) | 246, 501, 723 |
| BstSCI | CCNGG | 4 cut(s) | 244, 499, 721, 798 |
| BstSFI | CTRYAG | 2 cut(s) | 253, 669 |
| BstUI | CGCG | 3 cut(s) | 353, 445, 456 |
| BstV1I | GCAGC | 4 cut(s) | 427, 655, 683, 824 |
| BstX2I | RGATCY | 3 cut(s) | 91, 474, 480 |
| BstYI | RGATCY | 3 cut(s) | 91, 474, 480 |
| BstZI | CGGCCG | 1 cut(s) | 51 |
| BsuRI | GGCC | 2 cut(s) | 53, 148 |
| BtgI | CCRYGG | 1 cut(s) | 744 |
| BtgZI | GCGATG | 1 cut(s) | 368 |
| BtsCI | GGATG | 3 cut(s) | 96, 188, 604 |
| BtsI | GCAGTG | 1 cut(s) | 519 |
| BtsIMutI | CAGTG | 3 cut(s) | 369, 424, 519 |
| Cac8I | GCNNGC | 1 cut(s) | 581 |
| CciI | TCATGA | 2 cut(s) | 226, 829 |
| CfoI | GCGC | 2 cut(s) | 445, 456 |
| Cfr10I | RCCGGY | 1 cut(s) | 450 |
| CseI | GACGC | 1 cut(s) | 434 |
| Csp6I | GTAC | 7 cut(s) | 133, 195, 340, 641, 648, 663, 836 |
| CviAII | CATG | 5 cut(s) | 77, 227, 287, 529, 830 |
| CviQI | GTAC | 7 cut(s) | 133, 195, 340, 641, 648, 663, 836 |
| DdeI | CTNAG | 2 cut(s) | 676, 839 |
| DraIII | CACNNNGTG | 1 cut(s) | 656 |
| EaeI | YGGCCR | 2 cut(s) | 51, 146 |
| EagI | CGGCCG | 1 cut(s) | 51 |
| Eam1104I | CTCTTC | 5 cut(s) | 285, 297, 303, 560, 745 |
| EarI | CTCTTC | 5 cut(s) | 285, 297, 303, 560, 745 |
| EclXI | CGGCCG | 1 cut(s) | 51 |
| Eco52I | CGGCCG | 1 cut(s) | 51 |
| EcoRII | CCWGG | 3 cut(s) | 244, 499, 721 |
| EcoT22I | ATGCAT | 1 cut(s) | 623 |
| Esp3I | CGTCTC | 1 cut(s) | 52 |
| FaeI | CATG | 5 cut(s) | 80, 230, 290, 532, 833 |
| FatI | CATG | 5 cut(s) | 76, 226, 286, 528, 829 |
| FauI | CCCGC | 1 cut(s) | 435 |
| FbaI | TGATCA | 2 cut(s) | 211, 229 |
| Fnu4HI | GCNGC | 6 cut(s) | 54, 351, 441, 669, 672, 813 |
| FokI | GGATG | 3 cut(s) | 83, 175, 591 |
| Fsp4HI | GCNGC | 6 cut(s) | 54, 351, 441, 669, 672, 813 |
| FspBI | CTAG | 2 cut(s) | 236, 654 |
| GlaI | GCGC | 2 cut(s) | 444, 455 |
| GluI | GCNGC | 6 cut(s) | 54, 351, 441, 669, 672, 813 |
| GsaI | CCCAGC | 1 cut(s) | 35 |
| GsuI | CTGGAG | 2 cut(s) | 78, 657 |
| HaeIII | GGCC | 2 cut(s) | 53, 148 |
| HapII | CCGG | 4 cut(s) | 299, 451, 478, 799 |
| HgaI | GACGC | 1 cut(s) | 434 |
| HhaI | GCGC | 2 cut(s) | 445, 456 |
| Hin1II | CATG | 5 cut(s) | 80, 230, 290, 532, 833 |
| Hin6I | GCGC | 2 cut(s) | 443, 454 |
| HinP1I | GCGC | 2 cut(s) | 443, 454 |
| HincII | GTYRAC | 1 cut(s) | 631 |
| HindII | GTYRAC | 1 cut(s) | 631 |
| HinfI | GANTC | 5 cut(s) | 137, 414, 595, 777, 822 |
| HpaI | GTTAAC | 1 cut(s) | 631 |
| HpaII | CCGG | 4 cut(s) | 299, 451, 478, 799 |
| HphI | GGTGA | 5 cut(s) | 113, 191, 440, 590, 602 |
| Hpy166II | GTNNAC | 3 cut(s) | 367, 631, 650 |
| Hpy188I | TCNGA | 2 cut(s) | 413, 756 |
| Hpy188III | TCNNGA | 6 cut(s) | 68, 227, 272, 478, 562, 830 |
| Hpy8I | GTNNAC | 3 cut(s) | 367, 631, 650 |
| Hpy99I | CGWCG | 1 cut(s) | 74 |
| HpyAV | CCTTC | 3 cut(s) | 212, 322, 785 |
| HpyCH4IV | ACGT | 1 cut(s) | 408 |
| HpyCH4V | TGCA | 6 cut(s) | 358, 487, 621, 659, 671, 812 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 451, 665, 677, 712 |
| HpyF3I | CTNAG | 2 cut(s) | 676, 839 |
| HpySE526I | ACGT | 1 cut(s) | 408 |
| Hsp92II | CATG | 5 cut(s) | 80, 230, 290, 532, 833 |
| HspAI | GCGC | 2 cut(s) | 443, 454 |
| Kpn2I | TCCGGA | 1 cut(s) | 477 |
| Ksp22I | TGATCA | 2 cut(s) | 211, 229 |
| KspAI | GTTAAC | 1 cut(s) | 631 |
| LmnI | GCTCC | 4 cut(s) | 108, 295, 320, 711 |
| Lsp1109I | GCAGC | 4 cut(s) | 427, 655, 683, 824 |
| LweI | GCATC | 1 cut(s) | 345 |
| MaeI | CTAG | 2 cut(s) | 236, 654 |
| MaeII | ACGT | 1 cut(s) | 408 |
| MaeIII | GTNAC | 4 cut(s) | 257, 419, 446, 596 |
| MboII | GAAGA | 8 cut(s) | 101, 287, 302, 314, 320, 484, 577, 732 |
| MflI | RGATCY | 3 cut(s) | 91, 474, 480 |
| MluCI | AATT | 3 cut(s) | 13, 126, 215 |
| MlyI | GAGTC | 1 cut(s) | 604 |
| MmeI | TCCRAC | 2 cut(s) | 187, 779 |
| Mph1103I | ATGCAT | 1 cut(s) | 623 |
| MroI | TCCGGA | 1 cut(s) | 477 |
| MroXI | GAANNNNTTC | 2 cut(s) | 279, 543 |
| MseI | TTAA | 4 cut(s) | 20, 624, 630, 847 |
| MspA1I | CMGCKG | 3 cut(s) | 31, 56, 668 |
| MspI | CCGG | 4 cut(s) | 299, 451, 478, 799 |
| MspR9I | CCNGG | 4 cut(s) | 246, 501, 723, 800 |
| MvaI | CCWGG | 3 cut(s) | 246, 501, 723 |
| MvnI | CGCG | 3 cut(s) | 353, 445, 456 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 451, 665, 677, 712 |
| NciI | CCSGG | 1 cut(s) | 800 |
| NlaIII | CATG | 5 cut(s) | 80, 230, 290, 532, 833 |
| NlaIV | GGNNCC | 3 cut(s) | 297, 482, 707 |
| NmeAIII | GCCGAG | 1 cut(s) | 29 |
| NmuCI | GTSAC | 3 cut(s) | 419, 446, 596 |
| NsiI | ATGCAT | 1 cut(s) | 623 |
| PagI | TCATGA | 2 cut(s) | 226, 829 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 752 |
| PdmI | GAANNNNTTC | 2 cut(s) | 279, 543 |
| PfeI | GAWTC | 4 cut(s) | 137, 414, 777, 822 |
| Pfl23II | CGTACG | 1 cut(s) | 132 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 773 |
| PkrI | GCNGC | 6 cut(s) | 55, 352, 442, 670, 673, 814 |
| PleI | GAGTC | 1 cut(s) | 603 |
| PpsI | GAGTC | 1 cut(s) | 603 |
| PshBI | ATTAAT | 1 cut(s) | 624 |
| Psp6I | CCWGG | 3 cut(s) | 244, 499, 721 |
| PspFI | CCCAGC | 1 cut(s) | 31 |
| PspGI | CCWGG | 3 cut(s) | 244, 499, 721 |
| PspLI | CGTACG | 1 cut(s) | 132 |
| PspN4I | GGNNCC | 3 cut(s) | 297, 482, 707 |
| PstI | CTGCAG | 1 cut(s) | 673 |
| PsuI | RGATCY | 3 cut(s) | 91, 474, 480 |
| PvuII | CAGCTG | 1 cut(s) | 31 |
| RsaI | GTAC | 7 cut(s) | 134, 196, 341, 642, 649, 664, 837 |
| RsaNI | GTAC | 7 cut(s) | 133, 195, 340, 641, 648, 663, 836 |
| SaqAI | TTAA | 4 cut(s) | 20, 624, 630, 847 |
| SatI | GCNGC | 6 cut(s) | 54, 351, 441, 669, 672, 813 |
| ScaI | AGTACT | 2 cut(s) | 196, 642 |
| SchI | GAGTC | 1 cut(s) | 604 |
| ScrFI | CCNGG | 4 cut(s) | 246, 501, 723, 800 |
| SfaNI | GCATC | 1 cut(s) | 345 |
| SfcI | CTRYAG | 2 cut(s) | 253, 669 |
| SgrAI | CRCCGGYG | 1 cut(s) | 450 |
| SpeI | ACTAGT | 1 cut(s) | 235 |
| Sse9I | AATT | 3 cut(s) | 13, 126, 215 |
| SsiI | CCGC | 6 cut(s) | 54, 351, 428, 577, 666, 713 |
| SspMI | CTAG | 2 cut(s) | 236, 654 |
| StyD4I | CCNGG | 4 cut(s) | 244, 499, 721, 798 |
| TaiI | ACGT | 1 cut(s) | 411 |
| TaqI | TCGA | 1 cut(s) | 593 |
| TasI | AATT | 3 cut(s) | 13, 126, 215 |
| TatI | WGTACW | 3 cut(s) | 194, 339, 640 |
| TauI | GCSGC | 2 cut(s) | 56, 353 |
| TfiI | GAWTC | 4 cut(s) | 137, 414, 777, 822 |
| Tru1I | TTAA | 4 cut(s) | 20, 624, 630, 847 |
| Tru9I | TTAA | 4 cut(s) | 20, 624, 630, 847 |
| TscAI | CASTG | 3 cut(s) | 369, 424, 526 |
| TseFI | GTSAC | 3 cut(s) | 419, 446, 596 |
| TseI | GCWGC | 4 cut(s) | 440, 668, 671, 812 |
| Tsp45I | GTSAC | 3 cut(s) | 419, 446, 596 |
| TspDTI | ATGAA | 3 cut(s) | 194, 303, 341 |
| TspGWI | ACGGA | 1 cut(s) | 761 |
| TspRI | CASTG | 3 cut(s) | 369, 424, 526 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 773 |
| VspI | ATTAAT | 1 cut(s) | 624 |
| XapI | RAATTY | 1 cut(s) | 126 |
| XmnI | GAANNNNTTC | 2 cut(s) | 279, 543 |
| XspI | CTAG | 2 cut(s) | 236, 654 |
| ZrmI | AGTACT | 2 cut(s) | 196, 642 |
| Zsp2I | ATGCAT | 1 cut(s) | 623 |