isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1020 |
| AciI | CCGC | 3 cut(s) | 314, 710, 985 |
| AclWI | GGATC | 1 cut(s) | 233 |
| AcoI | YGGCCR | 3 cut(s) | 1135, 1139, 1207 |
| AcsI | RAATTY | 1 cut(s) | 632 |
| AfaI | GTAC | 2 cut(s) | 587, 1249 |
| AflII | CTTAAG | 2 cut(s) | 563, 871 |
| AluBI | AGCT | 5 cut(s) | 140, 175, 669, 844, 1088 |
| AluI | AGCT | 5 cut(s) | 140, 175, 669, 844, 1088 |
| Alw26I | GTCTC | 4 cut(s) | 50, 69, 459, 1007 |
| AlwI | GGATC | 1 cut(s) | 233 |
| AoxI | GGCC | 3 cut(s) | 1135, 1139, 1207 |
| ApeKI | GCWGC | 3 cut(s) | 329, 332, 1085 |
| ApoI | RAATTY | 1 cut(s) | 632 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 817, 849, 919, 951 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 723 |
| AspLEI | GCGC | 1 cut(s) | 1255 |
| AspS9I | GGNCC | 2 cut(s) | 707, 927 |
| AsuHPI | GGTGA | 4 cut(s) | 170, 551, 645, 1229 |
| AsuII | TTCGAA | 1 cut(s) | 1159 |
| AvaII | GGWCC | 2 cut(s) | 707, 927 |
| BanII | GRGCYC | 1 cut(s) | 218 |
| BbvI | GCAGC | 3 cut(s) | 316, 319, 1097 |
| BccI | CCATC | 2 cut(s) | 149, 1138 |
| BciVI | GTATCC | 2 cut(s) | 353, 767 |
| BclI | TGATCA | 1 cut(s) | 433 |
| BcoDI | GTCTC | 4 cut(s) | 50, 69, 459, 1007 |
| BfaI | CTAG | 5 cut(s) | 132, 204, 828, 1008, 1089 |
| BfrI | CTTAAG | 2 cut(s) | 563, 871 |
| BfuI | GTATCC | 2 cut(s) | 353, 767 |
| BisI | GCNGC | 3 cut(s) | 330, 333, 1086 |
| BlsI | GCNGC | 3 cut(s) | 331, 334, 1087 |
| Bme18I | GGWCC | 2 cut(s) | 707, 927 |
| BmgT120I | GGNCC | 2 cut(s) | 707, 927 |
| BmiI | GGNNCC | 1 cut(s) | 1229 |
| BmsI | GCATC | 2 cut(s) | 181, 1072 |
| Bpu14I | TTCGAA | 1 cut(s) | 1159 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| BsaJI | CCNNGG | 1 cut(s) | 145 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 881, 911, 944, 974 |
| Bse118I | RCCGGY | 2 cut(s) | 1137, 1209 |
| Bse1I | ACTGG | 1 cut(s) | 382 |
| Bse3DI | GCAATG | 1 cut(s) | 763 |
| BseDI | CCNNGG | 1 cut(s) | 145 |
| BseGI | GGATG | 2 cut(s) | 1048, 1130 |
| BseMI | GCAATG | 1 cut(s) | 763 |
| BseMII | CTCAG | 1 cut(s) | 185 |
| BseNI | ACTGG | 1 cut(s) | 382 |
| BseRI | GAGGAG | 1 cut(s) | 528 |
| BseX3I | CGGCCG | 1 cut(s) | 1135 |
| BseXI | GCAGC | 3 cut(s) | 316, 319, 1097 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1138 |
| BshFI | GGCC | 3 cut(s) | 1137, 1141, 1209 |
| BsiEI | CGRYCG | 1 cut(s) | 1138 |
| BsiSI | CCGG | 3 cut(s) | 1134, 1138, 1210 |
| BsmAI | GTCTC | 4 cut(s) | 50, 69, 459, 1007 |
| BsmI | GAATGC | 3 cut(s) | 76, 309, 514 |
| BsnI | GGCC | 3 cut(s) | 1137, 1141, 1209 |
| Bsp119I | TTCGAA | 1 cut(s) | 1159 |
| Bsp1286I | GDGCHC | 1 cut(s) | 218 |
| Bsp143I | GATC | 4 cut(s) | 238, 433, 487, 731 |
| Bsp19I | CCATGG | 1 cut(s) | 145 |
| BspACI | CCGC | 3 cut(s) | 314, 710, 985 |
| BspANI | GGCC | 3 cut(s) | 1137, 1141, 1209 |
| BspCNI | CTCAG | 1 cut(s) | 184 |
| BspHI | TCATGA | 2 cut(s) | 151, 187 |
| BspLI | GGNNCC | 1 cut(s) | 1229 |
| BspPI | GGATC | 1 cut(s) | 233 |
| BspT104I | TTCGAA | 1 cut(s) | 1159 |
| BspTI | CTTAAG | 2 cut(s) | 563, 871 |
| BsrDI | GCAATG | 1 cut(s) | 763 |
| BsrFI | RCCGGY | 2 cut(s) | 1137, 1209 |
| BsrI | ACTGG | 1 cut(s) | 382 |
| BssAI | RCCGGY | 2 cut(s) | 1137, 1209 |
| BssECI | CCNNGG | 1 cut(s) | 145 |
| BssMI | GATC | 4 cut(s) | 238, 433, 487, 731 |
| BssT1I | CCWWGG | 1 cut(s) | 145 |
| Bst4CI | ACNGT | 3 cut(s) | 61, 504, 1018 |
| Bst6I | CTCTTC | 2 cut(s) | 338, 714 |
| BstAFI | CTTAAG | 2 cut(s) | 563, 871 |
| BstBI | TTCGAA | 1 cut(s) | 1159 |
| BstC8I | GCNNGC | 3 cut(s) | 667, 916, 1139 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstDSI | CCRYGG | 1 cut(s) | 145 |
| BstF5I | GGATG | 2 cut(s) | 1048, 1130 |
| BstHHI | GCGC | 1 cut(s) | 1255 |
| BstKTI | GATC | 4 cut(s) | 241, 436, 490, 734 |
| BstMAI | GTCTC | 4 cut(s) | 50, 69, 459, 1007 |
| BstMBI | GATC | 4 cut(s) | 238, 433, 487, 731 |
| BstMCI | CGRYCG | 1 cut(s) | 1138 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 137, 222, 294, 1250 |
| BstNSI | RCATGY | 1 cut(s) | 918 |
| BstV1I | GCAGC | 3 cut(s) | 316, 319, 1097 |
| BstZI | CGGCCG | 1 cut(s) | 1135 |
| BsuI | GTATCC | 2 cut(s) | 353, 767 |
| BsuRI | GGCC | 3 cut(s) | 1137, 1141, 1209 |
| BtgI | CCRYGG | 1 cut(s) | 145 |
| BtsCI | GGATG | 2 cut(s) | 1048, 1130 |
| Cac8I | GCNNGC | 3 cut(s) | 667, 916, 1139 |
| CciI | TCATGA | 2 cut(s) | 151, 187 |
| CfoI | GCGC | 1 cut(s) | 1255 |
| Cfr10I | RCCGGY | 2 cut(s) | 1137, 1209 |
| Cfr13I | GGNCC | 2 cut(s) | 707, 927 |
| Csp6I | GTAC | 2 cut(s) | 586, 1248 |
| CviAII | CATG | 7 cut(s) | 146, 152, 188, 306, 410, 915, 1024 |
| CviQI | GTAC | 2 cut(s) | 586, 1248 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 4 cut(s) | 240, 435, 489, 733 |
| DpnII | GATC | 4 cut(s) | 238, 433, 487, 731 |
| EaeI | YGGCCR | 3 cut(s) | 1135, 1139, 1207 |
| EagI | CGGCCG | 1 cut(s) | 1135 |
| Eam1104I | CTCTTC | 2 cut(s) | 338, 714 |
| EarI | CTCTTC | 2 cut(s) | 338, 714 |
| EciI | GGCGGA | 1 cut(s) | 699 |
| EclXI | CGGCCG | 1 cut(s) | 1135 |
| Eco130I | CCWWGG | 1 cut(s) | 145 |
| Eco24I | GRGCYC | 1 cut(s) | 218 |
| Eco47I | GGWCC | 2 cut(s) | 707, 927 |
| Eco52I | CGGCCG | 1 cut(s) | 1135 |
| EcoT14I | CCWWGG | 1 cut(s) | 145 |
| EcoT22I | ATGCAT | 1 cut(s) | 311 |
| EcoT38I | GRGCYC | 1 cut(s) | 218 |
| ErhI | CCWWGG | 1 cut(s) | 145 |
| FaeI | CATG | 7 cut(s) | 149, 155, 191, 309, 413, 918, 1027 |
| FatI | CATG | 7 cut(s) | 145, 151, 187, 305, 409, 914, 1023 |
| FauI | CCCGC | 1 cut(s) | 978 |
| FauNDI | CATATG | 1 cut(s) | 1039 |
| FbaI | TGATCA | 1 cut(s) | 433 |
| FblI | GTMKAC | 1 cut(s) | 1020 |
| Fnu4HI | GCNGC | 3 cut(s) | 330, 333, 1086 |
| FokI | GGATG | 2 cut(s) | 1035, 1117 |
| FriOI | GRGCYC | 1 cut(s) | 218 |
| FseI | GGCCGGCC | 1 cut(s) | 1141 |
| Fsp4HI | GCNGC | 3 cut(s) | 330, 333, 1086 |
| FspBI | CTAG | 5 cut(s) | 132, 204, 828, 1008, 1089 |
| GlaI | GCGC | 1 cut(s) | 1254 |
| GluI | GCNGC | 3 cut(s) | 330, 333, 1086 |
| HaeIII | GGCC | 3 cut(s) | 1137, 1141, 1209 |
| HapII | CCGG | 3 cut(s) | 1134, 1138, 1210 |
| HhaI | GCGC | 1 cut(s) | 1255 |
| Hin1II | CATG | 7 cut(s) | 149, 155, 191, 309, 413, 918, 1027 |
| Hin6I | GCGC | 1 cut(s) | 1253 |
| HinP1I | GCGC | 1 cut(s) | 1253 |
| HincII | GTYRAC | 1 cut(s) | 616 |
| HindII | GTYRAC | 1 cut(s) | 616 |
| HinfI | GANTC | 4 cut(s) | 161, 398, 533, 1028 |
| HpaII | CCGG | 3 cut(s) | 1134, 1138, 1210 |
| HphI | GGTGA | 4 cut(s) | 170, 551, 645, 1229 |
| Hpy166II | GTNNAC | 5 cut(s) | 586, 616, 927, 1021, 1248 |
| Hpy188I | TCNGA | 3 cut(s) | 10, 403, 901 |
| Hpy188III | TCNNGA | 4 cut(s) | 152, 188, 530, 600 |
| Hpy8I | GTNNAC | 5 cut(s) | 586, 616, 927, 1021, 1248 |
| HpyAV | CCTTC | 5 cut(s) | 115, 695, 860, 901, 1172 |
| HpyCH4III | ACNGT | 3 cut(s) | 61, 504, 1018 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 137, 222, 294, 1250 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| Hsp92II | CATG | 7 cut(s) | 149, 155, 191, 309, 413, 918, 1027 |
| HspAI | GCGC | 1 cut(s) | 1253 |
| KroI | GCCGGC | 1 cut(s) | 1137 |
| KroNI | GCCGGC | 1 cut(s) | 1139 |
| Ksp22I | TGATCA | 1 cut(s) | 433 |
| Kzo9I | GATC | 4 cut(s) | 238, 433, 487, 731 |
| LmnI | GCTCC | 1 cut(s) | 1227 |
| LpnPI | CCDG | 7 cut(s) | 363, 505, 543, 763, 1147, 1151, 1223 |
| Lsp1109I | GCAGC | 3 cut(s) | 316, 319, 1097 |
| LweI | GCATC | 2 cut(s) | 181, 1072 |
| MaeI | CTAG | 5 cut(s) | 132, 204, 828, 1008, 1089 |
| MaeIII | GTNAC | 3 cut(s) | 158, 472, 481 |
| MalI | GATC | 4 cut(s) | 240, 435, 489, 733 |
| MboI | GATC | 4 cut(s) | 238, 433, 487, 731 |
| MboII | GAAGA | 8 cut(s) | 259, 316, 355, 477, 706, 731, 976, 1091 |
| MfeI | CAATTG | 1 cut(s) | 820 |
| MhlI | GDGCHC | 1 cut(s) | 218 |
| MluCI | AATT | 6 cut(s) | 208, 415, 604, 632, 820, 1257 |
| MlyI | GAGTC | 1 cut(s) | 155 |
| MmeI | TCCRAC | 1 cut(s) | 723 |
| Mph1103I | ATGCAT | 1 cut(s) | 311 |
| MroNI | GCCGGC | 1 cut(s) | 1137 |
| MroXI | GAANNNNTTC | 1 cut(s) | 723 |
| MseI | TTAA | 7 cut(s) | 245, 300, 564, 816, 872, 879, 1107 |
| MslI | CAYNNNNRTG | 2 cut(s) | 150, 156 |
| MspCI | CTTAAG | 2 cut(s) | 563, 871 |
| MspI | CCGG | 3 cut(s) | 1134, 1138, 1210 |
| MunI | CAATTG | 1 cut(s) | 820 |
| Mva1269I | GAATGC | 3 cut(s) | 76, 309, 514 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 137, 222, 294, 1250 |
| NaeI | GCCGGC | 1 cut(s) | 1139 |
| NcoI | CCATGG | 1 cut(s) | 145 |
| NdeI | CATATG | 1 cut(s) | 1039 |
| NdeII | GATC | 4 cut(s) | 238, 433, 487, 731 |
| NgoMIV | GCCGGC | 1 cut(s) | 1137 |
| NlaIII | CATG | 7 cut(s) | 149, 155, 191, 309, 413, 918, 1027 |
| NlaIV | GGNNCC | 1 cut(s) | 1229 |
| NmuCI | GTSAC | 2 cut(s) | 158, 472 |
| NsiI | ATGCAT | 1 cut(s) | 311 |
| NspI | RCATGY | 1 cut(s) | 918 |
| NspV | TTCGAA | 1 cut(s) | 1159 |
| PaeI | GCATGC | 1 cut(s) | 918 |
| PagI | TCATGA | 2 cut(s) | 151, 187 |
| PctI | GAATGC | 3 cut(s) | 76, 309, 514 |
| PdiI | GCCGGC | 1 cut(s) | 1139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 723 |
| PfeI | GAWTC | 3 cut(s) | 398, 533, 1028 |
| PflFI | GACNNNGTC | 1 cut(s) | 61 |
| PkrI | GCNGC | 3 cut(s) | 331, 334, 1087 |
| PleI | GAGTC | 1 cut(s) | 155 |
| PpsI | GAGTC | 1 cut(s) | 155 |
| PspN4I | GGNNCC | 1 cut(s) | 1229 |
| PspPI | GGNCC | 2 cut(s) | 707, 927 |
| PsyI | GACNNNGTC | 1 cut(s) | 61 |
| RigI | GGCCGGCC | 1 cut(s) | 1141 |
| RsaI | GTAC | 2 cut(s) | 587, 1249 |
| RsaNI | GTAC | 2 cut(s) | 586, 1248 |
| RseI | CAYNNNNRTG | 2 cut(s) | 150, 156 |
| SaqAI | TTAA | 7 cut(s) | 245, 300, 564, 816, 872, 879, 1107 |
| SatI | GCNGC | 3 cut(s) | 330, 333, 1086 |
| Sau3AI | GATC | 4 cut(s) | 238, 433, 487, 731 |
| Sau96I | GGNCC | 2 cut(s) | 707, 927 |
| SchI | GAGTC | 1 cut(s) | 155 |
| SduI | GDGCHC | 1 cut(s) | 218 |
| SfaNI | GCATC | 2 cut(s) | 181, 1072 |
| SfuI | TTCGAA | 1 cut(s) | 1159 |
| SinI | GGWCC | 2 cut(s) | 707, 927 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 150, 156 |
| SmlI | CTYRAG | 3 cut(s) | 44, 563, 871 |
| SmoI | CTYRAG | 3 cut(s) | 44, 563, 871 |
| SphI | GCATGC | 1 cut(s) | 918 |
| Sse9I | AATT | 6 cut(s) | 208, 415, 604, 632, 820, 1257 |
| SsiI | CCGC | 3 cut(s) | 314, 710, 985 |
| SspMI | CTAG | 5 cut(s) | 132, 204, 828, 1008, 1089 |
| StyI | CCWWGG | 1 cut(s) | 145 |
| TaaI | ACNGT | 3 cut(s) | 61, 504, 1018 |
| TaqI | TCGA | 2 cut(s) | 490, 1159 |
| TasI | AATT | 6 cut(s) | 208, 415, 604, 632, 820, 1257 |
| TatI | WGTACW | 1 cut(s) | 1247 |
| TfiI | GAWTC | 3 cut(s) | 398, 533, 1028 |
| Tru1I | TTAA | 7 cut(s) | 245, 300, 564, 816, 872, 879, 1107 |
| Tru9I | TTAA | 7 cut(s) | 245, 300, 564, 816, 872, 879, 1107 |
| TseFI | GTSAC | 2 cut(s) | 158, 472 |
| TseI | GCWGC | 3 cut(s) | 329, 332, 1085 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 472 |
| TspDTI | ATGAA | 7 cut(s) | 17, 259, 534, 653, 1037, 1092, 1178 |
| Tth111I | GACNNNGTC | 1 cut(s) | 61 |
| Vha464I | CTTAAG | 2 cut(s) | 563, 871 |
| VpaK11BI | GGWCC | 2 cut(s) | 707, 927 |
| XapI | RAATTY | 1 cut(s) | 632 |
| XceI | RCATGY | 1 cut(s) | 918 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 152 |
| XmiI | GTMKAC | 1 cut(s) | 1020 |
| XmnI | GAANNNNTTC | 1 cut(s) | 723 |
| XspI | CTAG | 5 cut(s) | 132, 204, 828, 1008, 1089 |
| Zsp2I | ATGCAT | 1 cut(s) | 311 |