MD11G1161900.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000043
Physical Location & Seq
Forward (+)
16324752 .. 16328017
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1161900.v1.1.491

Sequence Viewer

Length: 2181 bp
ATGGAGAGTGCTAGAATAGCAAGGTGTAAATATCGTTCATTAACGGTTGTCATTGCGTTGTCTGAAAATAGTAAATATGTGGATATTTATAATGAGATATGTTTAAGGTTTAAGGAACTGAAAGTGGGAAGCTTTGAGCTGACGTATTCTCTTCCTGAGCACCCTAATTGTTTGCTGCAATCCGATATGGATGTGAATATGATGTTGCTATGTTTGAAAGTGTTGAAGAGTAATTTTATTGATATATTGGTGAAGGACCTTCTGAGTTCAAATAATGAGGATGATGATCAAAATCAAGAAGAGTCCCATCATGCAGCATCTAATCATACAATTTCTAACAATGAAGTGTCTAATCGTACAGCACCATTTTCGTGCACCTTAGAAAATCAAAGTGCCATTGATGAAAATGAACTTTTGAGAGTGGAAGGGGACAATAGATTTTTGTCTCAGGATTGGAAGGAATATATTAGTCATGTCGGTCAGAGGTTTGAGGGGGGTGTAACTGAATTTCGTAACAAGTTAATCAAGTATGCTGCTCAGATGAGATTTCGTCTTGTTTATGCAAAGAATGATAAAGAACGTATCACTGCTGAATGTTTTAAGAAGATTTCAGATGGATGTAAATGGCGTATACATGCTTCGCTATGTGGAGGGAATGGTTTTTTCTACATAAGGAGTTTGAATAATGTTCACACGTGCACTAGTGATTATGAAAAGCAGAAAACGAGAAGCATGGGTTCAAAGGTTATATCTTCTGTCCTGGTGGATCAAATCCGTGAGAAACCAATGATTAAACCAACAGATATTGTGAAGGATTTTAAGCAAAAGTATGGTCTTGATATCTCTTACCATAGTGCACGGCGAGGGAAGGAATTGGCTAAGAGCGAGGTTCATGGTGATGAAACCTTATCTTACAATCAATTACTTTGGTACAAAGATACTTTAATGTCAACCAATCGGGGGTCACATTGTGTCTTGGAGTGTGATCTGCAGACTTCTCGCTTTCAGAGATTGTTTATTTGCTATGGTGCTTGCATTGAGGGATTTCAATGGTGCAGACCTTTATTGTTCATGGATGCAACTTCTTTTAAAAGTAAGTATAAGGGGCAGCTAATTGGTGCTACCGGGAAGGATGGAAATCAAGGATTTTTCCCATTTGCTTTTGCTATCGTGGCCTCAGAAAGCGAGGAAAACTGGAGCTGGTTCTTTGAAAATTTAGCCAAAGTTTTGACACCACAAGGTAGGACAATTACATTTGTATCTAATCATGACAGAGGTGTGGCCGGAAATGTTTCAAGCATATTTCCAACATCCCATCATGCATTTTGTTTGAATGATATGAAACAGAACCTCGCATCTTGGTATCCGGCTACCTATAGTAAATTTTTTCAAGACCGAATTGTTGATCTTTTTATGGAATGCGTTTCTGCTCCAACGGAAGCTGCTTTTGAGATTAATATGAAAAAATTAAGAGATGAGGGTGGTGCTCCTGTGAAGACCTTTCTGGAAAATTTTCCAAAGGAGAATTGGTCATGTGCCTACTTTAAGGGTAATCGATACAGTGACATGTACAGCACTGTTTCTGAATTATTTCAATCTTGGACGTTGGAGCTATCTGTCTTGCCTATATGTCAAATGGTTGACGGAATCAGGATTAAACTCATGGGAATGATGTCTGAAAGGAGTTGTGAAGCGGAGCAATGTAGCTCTATTCTCTGTCCTGAGATGGAGAAAACCTTGAACGAAATGCTGATAGTTGGCCGCCATTGGAATGCCATCCGTTCTTGTGGTTCTGTTTTCGAGGTTCTTGCTGAAGGTTCTTTTACGGTTGATTTGGATAATCGTTTTTGCTCCTGTCATGAGTGGCAAATGAAGGGCTTTCCCTGTGCTCATGCACTTGTTGCCGTTCGAAAAAATTCTGGTTACGTGTACAACTACATTGATGATTACTTCAAGGTGAGCCACTACAGAAGTTCGTACGCGAGTCATATTTCGCCGCTGCCGGACATTAAGGACGCGGTTCACGAGGGATCGGAAGATATGGTCGTCCTACCTCCGCTAACTCGGCAGCCAAAGAAGAATAAAAGAAAATCTGTTGAAAAAGTTACGAGGCCGATTAAATGTGGTCGATGTGGTGCAGTTGGAGGGCATAATAAGAAGACATGTACTGCAATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

727

Amino Acids

82.89

Weight (kDa)

7.85

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 157 - 221 6e-14 MuDR family transposase
MULE PF10551 356 - 449 4.8e-14 MULE transposase domain
SWIM PF04434 608 - 636 2.8e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27871 FvH4_1g29590 FvH4_1g29591 FvH4_1g29862 FvH4_2g00085 FvH4_2g02783 FvH4_2g02910 FvH4_2g18181 FvH4_2g24333 FvH4_3g06732 FvH4_3g17131 FvH4_3g20061 FvH4_3g20062 FvH4_3g24441 FvH4_3g24443 FvH4_3g24443 FvH4_3g24500 FvH4_3g24740 FvH4_3g25230 FvH4_3g26060 FvH4_3g27583 FvH4_3g32421 FvH4_3g35812 FvH4_3g38841 FvH4_3g40971 FvH4_3g44613 FvH4_3g44614 FvH4_3g44615 FvH4_4g04920 FvH4_4g07822 FvH4_4g08151 FvH4_4g08160 FvH4_4g08531 FvH4_4g09200 FvH4_4g09692 FvH4_4g10062 FvH4_4g10530 FvH4_5g03091 FvH4_5g03092 FvH4_5g06862 FvH4_5g06863 FvH4_5g07920 FvH4_5g17871 FvH4_5g17872 FvH4_5g23321 FvH4_5g24281 FvH4_5g24391 FvH4_5g28463 FvH4_5g34083 FvH4_6g06701 FvH4_6g20107 FvH4_6g20143 FvH4_6g22012 FvH4_6g22551 FvH4_6g31341 FvH4_6g33561 FvH4_6g33592 FvH4_6g34232 FvH4_6g34233 FvH4_6g37972 FvH4_6g37972 FvH4_6g37972 FvH4_6g39191 FvH4_6g39681 FvH4_6g45872 FvH4_7g01581 FvH4_7g02154 FvH4_7g03472 FvH4_7g07292 FvH4_7g07293 FvH4_7g20282 FvH4_7g30371
malus_domestica MD01G1221900.v1.1 MD03G1052700.v1.1 MD05G1118500.v1.1 MD10G1135700.v1.1 MD11G1161900.v1.1 MD12G1093400.v1.1 MD15G1409800.v1.1 MD16G1228000.v1.1
pyrus_communis pycom03g04970 pycom08g16190 pycom09g07650 pycom10g14400 pycom11g09170 pycom11g11100 pycom11g11120 pycom11g13240 pycom11g21780 pycom12g16560 pycom13g08440 pycom14g00770 pycom14g07540 pycom17g09330
rosa_chinensis RchiOBHm_Chr1g0318421 RchiOBHm_Chr1g0318431 RchiOBHm_Chr1g0327211 RchiOBHm_Chr1g0334951 RchiOBHm_Chr1g0343051 RchiOBHm_Chr1g0347471 RchiOBHm_Chr2g0084481 RchiOBHm_Chr2g0095011 RchiOBHm_Chr2g0096851 RchiOBHm_Chr2g0127961 RchiOBHm_Chr2g0130281 RchiOBHm_Chr2g0133091 RchiOBHm_Chr2g0173591 RchiOBHm_Chr3g0453251 RchiOBHm_Chr4g0384731 RchiOBHm_Chr4g0384871 RchiOBHm_Chr4g0422481 RchiOBHm_Chr5g0012141 RchiOBHm_Chr5g0019851 RchiOBHm_Chr5g0038651 RchiOBHm_Chr5g0042901 RchiOBHm_Chr5g0043951 RchiOBHm_Chr6g0253561 RchiOBHm_Chr7g0213551 RchiOBHm_Chr7g0220031 RchiOBHm_Chr7g0221581 RchiOBHm_Chr7g0230091 RchiOBHm_Chr7g0235291
rosa_laevigata RLG00000001336 RLG00000002469 RLG00000008084 RLG00000009350 RLG00000012956 RLG00000014177 RLG00000016845 RLG00000017722 RLG00000018937 RLG00000018957 RLG00000031697 RLG00000032070 RLG00000034648
rosa_multiflora Rmu_co8164630.1_g000001 Rmu_co8485123.1_g000001 Rmu_sc0000023.1_g000003 Rmu_sc0000068.1_g000010 Rmu_sc0000084.1_g000004 Rmu_sc0000186.1_g000020 Rmu_sc0000258.1_g000043 Rmu_sc0000305.1_g000013 Rmu_sc0000305.1_g000014 Rmu_sc0000340.1_g000040 Rmu_sc0000452.1_g000008 Rmu_sc0000470.1_g000022 Rmu_sc0000570.1_g000013 Rmu_sc0000570.1_g000014 Rmu_sc0000765.1_g000038 Rmu_sc0000774.1_g000029 Rmu_sc0000805.1_g000011 Rmu_sc0000830.1_g000067 Rmu_sc0000831.1_g000008 Rmu_sc0000918.1_g000005 Rmu_sc0000982.1_g000024 Rmu_sc0000982.1_g000025 Rmu_sc0001035.1_g000071 Rmu_sc0001035.1_g000072 Rmu_sc0001068.1_g000017 Rmu_sc0001136.1_g000015 Rmu_sc0001136.1_g000016 Rmu_sc0001386.1_g000028 Rmu_sc0001417.1_g000009 Rmu_sc0001598.1_g000010 Rmu_sc0001886.1_g000001 Rmu_sc0002129.1_g000043 Rmu_sc0002162.1_g000012 Rmu_sc0002252.1_g000006 Rmu_sc0002321.1_g000003 Rmu_sc0002344.1_g000013 Rmu_sc0002344.1_g000015 Rmu_sc0002592.1_g000004 Rmu_sc0002592.1_g000005 Rmu_sc0002691.1_g000042 Rmu_sc0002786.1_g000023 Rmu_sc0002845.1_g000019 Rmu_sc0002968.1_g000022 Rmu_sc0002988.1_g000001 Rmu_sc0003131.1_g000015 Rmu_sc0003180.1_g000017 Rmu_sc0003275.1_g000005 Rmu_sc0003275.1_g000075 Rmu_sc0003337.1_g000008 Rmu_sc0003830.1_g000005 Rmu_sc0004032.1_g000018 Rmu_sc0004277.1_g000068 Rmu_sc0004366.1_g000003 Rmu_sc0004371.1_g000005 Rmu_sc0004413.1_g000040 Rmu_sc0004898.1_g000009 Rmu_sc0004898.1_g000010 Rmu_sc0004929.1_g000002 Rmu_sc0005065.1_g000007 Rmu_sc0005065.1_g000008 Rmu_sc0005261.1_g000010 Rmu_sc0005375.1_g000019 Rmu_sc0005497.1_g000012 Rmu_sc0005704.1_g000001 Rmu_sc0005834.1_g000013 Rmu_sc0006076.1_g000004 Rmu_sc0006311.1_g000010 Rmu_sc0006669.1_g000018 Rmu_sc0006720.1_g000005 Rmu_sc0006841.1_g000002 Rmu_sc0006854.1_g000004 Rmu_sc0006854.1_g000005 Rmu_sc0006999.1_g000008 Rmu_sc0007415.1_g000001 Rmu_sc0007415.1_g000031 Rmu_sc0007650.1_g000004 Rmu_sc0007754.1_g000003 Rmu_sc0007912.1_g000004 Rmu_sc0007912.1_g000005 Rmu_sc0008429.1_g000004 Rmu_sc0009780.1_g000018 Rmu_sc0010062.1_g000002 Rmu_sc0010104.1_g000001 Rmu_sc0010647.1_g000002 Rmu_sc0010824.1_g000009 Rmu_sc0011112.1_g000010 Rmu_sc0013354.1_g000004 Rmu_sc0014685.1_g000005 Rmu_sc0014685.1_g000006 Rmu_sc0014882.1_g000002 Rmu_sc0019879.1_g000004 Rmu_sc0020359.1_g000006 Rmu_sc0020945.1_g000003 Rmu_sc0023467.1_g000001 Rmu_sc0025019.1_g000001 Rmu_sc0026446.1_g000002 Rmu_sc0027500.1_g000001 Rmu_sc0027830.1_g000001 Rmu_sc0028318.1_g000001 Rmu_sc0028858.1_g000002 Rmu_sc0031772.1_g000001 Rmu_sc0032192.1_g000001 Rmu_sc0033789.1_g000001 Rmu_sc0034922.1_g000001 Rmu_ssc0000295.1_g000057 Rmu_ssc0000309.1_g000034 Rmu_ssc0000420.1_g000035 Rmu_ssc0000423.1_g000017 Rmu_ssc0000470.1_g000004
rosa_roxburghii Rroxscaffold_1G00016870 Rroxscaffold_1G00024230 Rroxscaffold_1G00037110 Rroxscaffold_1G00037130 Rroxscaffold_2G00137090 Rroxscaffold_2G00137100 Rroxscaffold_3G00221680 Rroxscaffold_3G00224180 Rroxscaffold_3G00226070 Rroxscaffold_4G00291380 Rroxscaffold_4G00293060 Rroxscaffold_4G00319010 Rroxscaffold_5G00347090 Rroxscaffold_5G00355090 Rroxscaffold_5G00356950 Rroxscaffold_7G00193500 Rroxscaffold_7G00207010 Rroxscaffold_7G00207130 Rroxscaffold_7G00207140
rosa_rugosa Rorug01G0086400.1 Rorug01G0087900 Rorug01G0095400 Rorug01G0105300 Rorug01G0107000 Rorug01G0152600.1 Rorug01G0152700.1 Rorug02G0010200 Rorug02G0010200 Rorug02G0157800 Rorug02G0157900 Rorug02G0248300 Rorug02G0249100 Rorug02G0249200 Rorug02G0277800 Rorug02G0277900 Rorug02G0324700 Rorug02G0330600 Rorug02G0510200 Rorug03G0162000 Rorug03G0171700 Rorug03G0189100 Rorug03G0267900 Rorug03G0339000 Rorug04G0012700 Rorug04G0050900 Rorug04G0152300 Rorug04G0283700 Rorug05G0043600 Rorug05G0151200 Rorug05G0152700 Rorug05G0158400 Rorug05G0209100 Rorug05G0209100 Rorug05G0224900 Rorug05G0227700 Rorug05G0244300.1 Rorug05G0251800 Rorug05G0293600 Rorug05G0335900 Rorug05G0582400 Rorug06G0045400 Rorug06G0063700 Rorug06G0082300 Rorug06G0173900 Rorug06G0190800 Rorug06G0480100 Rorug07G0057100 Rorug07G0117700 Rorug07G0148300 Rorug07G0190900
rosa_samantha Rh1BG184600 Rh1CG100800 Rh1CG353300 Rh1DG147400 Rh1DG214200 Rh2AG491700 Rh2BG022000 Rh2BG196400 Rh2BG209900 Rh2BG331800 Rh2CG478100 Rh2DG096100 Rh2DG303100 Rh3AG125300 Rh3AG335300 Rh3BG274800 Rh3CG243100 Rh3CG243200 Rh3CG243300 Rh3CG365100 Rh3CG369400 Rh3DG341600 Rh3DG370500 Rh4AG060300 Rh4AG088400 Rh4AG357100 Rh4CG308700 Rh4CG440700 Rh4DG362800 Rh4DG421700 Rh5AG182900 Rh5AG284500 Rh5AG293500 Rh5AG440000 Rh5AG445200 Rh5AG512000 Rh5AG522000 Rh5BG294100 Rh5BG301500 Rh5BG347300 Rh5CG103200 Rh5CG155400 Rh5CG212800 Rh5CG231400 Rh5CG253700 Rh5CG329100 Rh5CG471500 Rh5DG304000 Rh5DG310700 Rh5DG466000 Rh6AG473800 Rh6BG022600 Rh6BG120300 Rh6BG292800 Rh6CG118500 Rh6CG366400 Rh6DG106900 Rh7BG324000 Rh7BG382800 Rh7DG221900 Rh7DG256900 Rh7DG259800 Rh7DG259900 Rh7DG329400 Rh7DG329500 Rh7DG351700 Rh7DG351800
rosa_wichuraiana Rw0G008220 Rw0G010100 Rw0G011420 Rw0G017230 Rw0G017240 Rw0G023340 Rw1G007820 Rw1G019090 Rw1G019100 Rw1G026940 Rw2G002550 Rw2G018570 Rw2G021650 Rw2G024850 Rw2G036390 Rw2G041200 Rw2G042490 Rw3G024200 Rw3G027660 Rw3G029100 Rw3G029110 Rw4G005930 Rw4G010720 Rw4G014560 Rw4G017210 Rw4G020740 Rw5G003740 Rw5G008130 Rw5G011060 Rw5G012210 Rw5G014240 Rw5G015950 Rw5G016590 Rw5G017570 Rw5G019040 Rw5G027200 Rw5G030010 Rw5G036030 Rw6G001380 Rw6G001420 Rw6G006520 Rw6G007020 Rw6G009200 Rw6G009300 Rw6G020110 Rw6G023690 Rw6G030650 Rw6G041310 Rw7G005190 Rw7G012150 Rw7G014860 Rw7G014870 Rw7G020130 Rw7G024500 Rw7G029450 Rw7G029460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AccI GTMKAC 1 cut(s) 631
AccII CGCG 2 cut(s) 1982, 2018
AciI CCGC 5 cut(s) 1694, 1762, 1997, 2018, 2057
AclWI GGATC 2 cut(s) 774, 2038
AcoI YGGCCR 2 cut(s) 1281, 1759
AcsI RAATTY 5 cut(s) 506, 1213, 1382, 1510, 1915
AcuI CTGAAG 1 cut(s) 1833
AcvI CACGTG 1 cut(s) 696
AdeI CACNNNGTG 1 cut(s) 971
AfaI GTAC 6 cut(s) 358, 932, 1571, 1931, 1979, 2167
AfiI CCNNNNNNNGG 1 cut(s) 960
AflIII ACRYGT 4 cut(s) 693, 1566, 1926, 2162
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 1 cut(s) 759
AluBI AGCT 7 cut(s) 132, 139, 1111, 1200, 1442, 1612, 1707
AluI AGCT 7 cut(s) 132, 139, 1111, 1200, 1442, 1612, 1707
Alw21I GWGCWC 6 cut(s) 162, 377, 701, 859, 1489, 1891
Alw26I GTCTC 1 cut(s) 450
Alw44I GTGCAC 3 cut(s) 373, 697, 855
AlwI GGATC 2 cut(s) 774, 2038
AoxI GGCC 4 cut(s) 1173, 1281, 1759, 2111
ApaLI GTGCAC 3 cut(s) 373, 697, 855
ApeKI GCWGC 7 cut(s) 175, 314, 533, 1108, 1442, 1999, 2068
ApoI RAATTY 5 cut(s) 506, 1213, 1382, 1510, 1915
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
AseI ATTAAT 1 cut(s) 1455
Asp700I GAANNNNTTC 4 cut(s) 1291, 1512, 1590, 1915
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 1126
AsuHPI GGTGA 3 cut(s) 262, 908, 1969
AsuII TTCGAA 1 cut(s) 1909
AvaII GGWCC 1 cut(s) 256
BaeGI GKGCMC 3 cut(s) 377, 701, 859
BaeI ACNNNNGTAYC 2 cut(s) 1242, 1275
BarI GAAGNNNNNNTAC 2 cut(s) 622, 654
BauI CACGAG 1 cut(s) 2024
BbrPI CACGTG 1 cut(s) 696
BbsI GAAGAC 2 cut(s) 1502, 2165
Bbv12I GWGCWC 6 cut(s) 162, 377, 701, 859, 1489, 1891
BbvI GCAGC 7 cut(s) 162, 326, 520, 1120, 1429, 1986, 2080
BccI CCATC 6 cut(s) 315, 608, 1127, 1323, 1720, 1784
BceAI ACGGC 2 cut(s) 875, 1889
BcgI CGANNNNNNTGC 6 cut(s) 351, 385, 980, 1014, 1790, 1824
BciT130I CCWGG 1 cut(s) 761
BciVI GTATCC 1 cut(s) 1374
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 1126
BcoDI GTCTC 1 cut(s) 450
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 2 cut(s) 12, 702
BfmI CTRYAG 3 cut(s) 989, 1375, 1966
BfuI GTATCC 1 cut(s) 1374
BisI GCNGC 9 cut(s) 176, 315, 534, 1109, 1443, 1762, 1997, 2000, 2069
BlsI GCNGC 9 cut(s) 177, 316, 535, 1110, 1444, 1763, 1998, 2001, 2070
Bme1390I CCNGG 2 cut(s) 761, 1126
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 761, 1126
BmsI GCATC 3 cut(s) 326, 1066, 1364
BpiI GAAGAC 2 cut(s) 1502, 2165
BpmI CTGGAG 1 cut(s) 1216
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 1909
BpuMI CCSGG 1 cut(s) 1126
Bsa29I ATCGAT 1 cut(s) 1555
BsaAI YACGTR 2 cut(s) 696, 1927
BsaBI GATNNNNATC 3 cut(s) 285, 291, 1137
BsaXI ACNNNNNCTCC 2 cut(s) 1514, 1544
Bsc4I CCNNNNNNNGG 1 cut(s) 960
Bse1I ACTGG 1 cut(s) 1199
Bse3DI GCAATG 2 cut(s) 51, 1706
Bse8I GATNNNNATC 3 cut(s) 285, 291, 1137
BseBI CCWGG 1 cut(s) 761
BseCI ATCGAT 1 cut(s) 1555
BseGI GGATG 7 cut(s) 196, 286, 623, 1081, 1138, 1310, 1776
BseJI GATNNNNATC 3 cut(s) 285, 291, 1137
BseLI CCNNNNNNNGG 1 cut(s) 960
BseMI GCAATG 2 cut(s) 51, 1706
BseMII CTCAG 6 cut(s) 147, 254, 461, 551, 1191, 1713
BseNI ACTGG 1 cut(s) 1199
BseSI GKGCMC 3 cut(s) 377, 701, 859
BseXI GCAGC 7 cut(s) 162, 326, 520, 1120, 1429, 1986, 2080
BsgI GTGCAG 2 cut(s) 1075, 2157
Bsh1236I CGCG 2 cut(s) 1982, 2018
BshFI GGCC 4 cut(s) 1175, 1283, 1761, 2113
BshVI ATCGAT 1 cut(s) 1555
BsiHKAI GWGCWC 6 cut(s) 162, 377, 701, 859, 1489, 1891
BsiSI CCGG 4 cut(s) 1125, 1284, 1367, 2003
BsiWI CGTACG 1 cut(s) 1977
BslFI GGGAC 2 cut(s) 289, 443
BslI CCNNNNNNNGG 1 cut(s) 960
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 289, 443
BsmI GAATGC 2 cut(s) 1424, 1777
BsnI GGCC 4 cut(s) 1175, 1283, 1761, 2113
Bsp119I TTCGAA 1 cut(s) 1909
Bsp1286I GDGCHC 6 cut(s) 162, 377, 701, 859, 1489, 1891
Bsp1407I TGTACA 2 cut(s) 1569, 1929
Bsp143I GATC 5 cut(s) 286, 766, 985, 1405, 2030
BspACI CCGC 5 cut(s) 1694, 1762, 1997, 2018, 2057
BspANI GGCC 4 cut(s) 1175, 1283, 1761, 2113
BspCNI CTCAG 6 cut(s) 148, 255, 460, 550, 1190, 1714
BspDI ATCGAT 1 cut(s) 1555
BspFNI CGCG 2 cut(s) 1982, 2018
BspHI TCATGA 2 cut(s) 1267, 1858
BspMAI CTGCAG 1 cut(s) 993
BspPI GGATC 2 cut(s) 774, 2038
BspT104I TTCGAA 1 cut(s) 1909
BsrDI GCAATG 2 cut(s) 51, 1706
BsrGI TGTACA 2 cut(s) 1569, 1929
BsrI ACTGG 1 cut(s) 1199
BssMI GATC 5 cut(s) 286, 766, 985, 1405, 2030
BssNAI GTATAC 1 cut(s) 632
BssSI CACGAG 1 cut(s) 2024
Bst1107I GTATAC 1 cut(s) 632
Bst2BI CACGAG 1 cut(s) 2024
Bst2UI CCWGG 1 cut(s) 761
Bst4CI ACNGT 4 cut(s) 46, 1562, 1579, 1828
Bst6I CTCTTC 3 cut(s) 156, 221, 294
BstAPI GCANNNNNTGC 1 cut(s) 1901
BstAUI TGTACA 2 cut(s) 1569, 1929
BstBAI YACGTR 2 cut(s) 696, 1927
BstBI TTCGAA 1 cut(s) 1909
BstC8I GCNNGC 1 cut(s) 1033
BstDEI CTNAG 8 cut(s) 156, 263, 379, 447, 537, 879, 1177, 1722
BstF5I GGATG 7 cut(s) 196, 286, 623, 1081, 1138, 1310, 1776
BstFNI CGCG 2 cut(s) 1982, 2018
BstKTI GATC 5 cut(s) 289, 769, 988, 1408, 2033
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 5 cut(s) 286, 766, 985, 1405, 2030
BstMWI GCNNNNNNNGC 4 cut(s) 17, 1172, 1901, 2065
BstNI CCWGG 1 cut(s) 761
BstNSI RCATGY 3 cut(s) 638, 1570, 2166
BstSCI CCNGG 2 cut(s) 759, 1124
BstSFI CTRYAG 3 cut(s) 989, 1375, 1966
BstSLI GKGCMC 3 cut(s) 377, 701, 859
BstUI CGCG 2 cut(s) 1982, 2018
BstV1I GCAGC 7 cut(s) 162, 326, 520, 1120, 1429, 1986, 2080
BstV2I GAAGAC 2 cut(s) 1502, 2165
BstZ17I GTATAC 1 cut(s) 632
Bsu15I ATCGAT 1 cut(s) 1555
BsuI GTATCC 1 cut(s) 1374
BsuRI GGCC 4 cut(s) 1175, 1283, 1761, 2113
BsuTUI ATCGAT 1 cut(s) 1555
BtsCI GGATG 7 cut(s) 196, 286, 623, 1081, 1138, 1310, 1776
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 585, 1567, 1575
Cac8I GCNNGC 1 cut(s) 1033
CciI TCATGA 2 cut(s) 1267, 1858
Cfr13I GGNCC 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 1555
CseI GACGC 1 cut(s) 2024
Csp6I GTAC 6 cut(s) 357, 931, 1570, 1930, 1978, 2166
CviQI GTAC 6 cut(s) 357, 931, 1570, 1930, 1978, 2166
DdeI CTNAG 8 cut(s) 156, 263, 379, 447, 537, 879, 1177, 1722
DpnI GATC 5 cut(s) 288, 768, 987, 1407, 2032
DpnII GATC 5 cut(s) 286, 766, 985, 1405, 2030
DraI TTTAAA 1 cut(s) 1090
DraIII CACNNNGTG 1 cut(s) 971
EaeI YGGCCR 2 cut(s) 1281, 1759
Eam1104I CTCTTC 3 cut(s) 156, 221, 294
EarI CTCTTC 3 cut(s) 156, 221, 294
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 1833
Eco72I CACGTG 1 cut(s) 696
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 759
EcoRV GATATC 1 cut(s) 841
EcoT22I ATGCAT 1 cut(s) 1324
FaqI GGGAC 2 cut(s) 289, 443
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 9 cut(s) 176, 315, 534, 1109, 1443, 1762, 1997, 2000, 2069
FokI GGATG 7 cut(s) 203, 293, 630, 1088, 1145, 1297, 1763
Fsp4HI GCNGC 9 cut(s) 176, 315, 534, 1109, 1443, 1762, 1997, 2000, 2069
FspBI CTAG 2 cut(s) 12, 702
GluI GCNGC 9 cut(s) 176, 315, 534, 1109, 1443, 1762, 1997, 2000, 2069
GsuI CTGGAG 1 cut(s) 1216
HaeIII GGCC 4 cut(s) 1175, 1283, 1761, 2113
HapII CCGG 4 cut(s) 1125, 1284, 1367, 2003
HgaI GACGC 1 cut(s) 2024
HincII GTYRAC 2 cut(s) 951, 1642
HindII GTYRAC 2 cut(s) 951, 1642
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 3 cut(s) 302, 1647, 1984
HpaII CCGG 4 cut(s) 1125, 1284, 1367, 2003
HphI GGTGA 3 cut(s) 262, 908, 1969
Hpy166II GTNNAC 9 cut(s) 375, 632, 691, 699, 857, 951, 1642, 1930, 2023
Hpy8I GTNNAC 9 cut(s) 375, 632, 691, 699, 857, 951, 1642, 1930, 2023
HpyAV CCTTC 9 cut(s) 247, 269, 419, 451, 805, 862, 1123, 1808, 1867
HpyCH4III ACNGT 4 cut(s) 46, 1562, 1579, 1828
HpyCH4IV ACGT 5 cut(s) 143, 580, 695, 1604, 1926
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 1172, 1901, 2065
HpyF3I CTNAG 8 cut(s) 156, 263, 379, 447, 537, 879, 1177, 1722
HpySE526I ACGT 5 cut(s) 143, 580, 695, 1604, 1926
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 5 cut(s) 286, 766, 985, 1405, 2030
LmnI GCTCC 6 cut(s) 1197, 1435, 1492, 1609, 1696, 1856
Lsp1109I GCAGC 7 cut(s) 162, 326, 520, 1120, 1429, 1986, 2080
LweI GCATC 3 cut(s) 326, 1066, 1364
MaeI CTAG 2 cut(s) 12, 702
MaeII ACGT 5 cut(s) 143, 580, 695, 1604, 1926
MaeIII GTNAC 6 cut(s) 499, 512, 963, 1562, 1922, 2104
MalI GATC 5 cut(s) 288, 768, 987, 1407, 2032
MboI GATC 5 cut(s) 286, 766, 985, 1405, 2030
MboII GAAGA 9 cut(s) 143, 238, 311, 616, 744, 1507, 2048, 2089, 2170
MhlI GDGCHC 6 cut(s) 162, 377, 701, 859, 1489, 1891
MlyI GAGTC 2 cut(s) 311, 1993
MmeI TCCRAC 4 cut(s) 1331, 1457, 1587, 2122
Mph1103I ATGCAT 1 cut(s) 1324
MroXI GAANNNNTTC 4 cut(s) 1291, 1512, 1590, 1915
MslI CAYNNNNRTG 4 cut(s) 370, 897, 1667, 1770
MspA1I CMGCKG 1 cut(s) 1999
MspI CCGG 4 cut(s) 1125, 1284, 1367, 2003
MspR9I CCNGG 2 cut(s) 761, 1126
Mva1269I GAATGC 2 cut(s) 1424, 1777
MvaI CCWGG 1 cut(s) 761
MvnI CGCG 2 cut(s) 1982, 2018
MwoI GCNNNNNNNGC 4 cut(s) 17, 1172, 1901, 2065
NciI CCSGG 1 cut(s) 1126
NdeII GATC 5 cut(s) 286, 766, 985, 1405, 2030
NmeAIII GCCGAG 1 cut(s) 2044
NmuCI GTSAC 2 cut(s) 963, 1562
NsiI ATGCAT 1 cut(s) 1324
NspI RCATGY 3 cut(s) 638, 1570, 2166
NspV TTCGAA 1 cut(s) 1909
PagI TCATGA 2 cut(s) 1267, 1858
PciI ACATGT 2 cut(s) 1566, 2162
PcsI WCGNNNNNNNCGW 1 cut(s) 2022
PctI GAATGC 2 cut(s) 1424, 1777
PdmI GAANNNNTTC 4 cut(s) 1291, 1512, 1590, 1915
PfeI GAWTC 1 cut(s) 1647
Pfl23II CGTACG 1 cut(s) 1977
PkrI GCNGC 9 cut(s) 177, 316, 535, 1110, 1444, 1763, 1998, 2001, 2070
PleI GAGTC 2 cut(s) 310, 1992
PmaCI CACGTG 1 cut(s) 696
PmlI CACGTG 1 cut(s) 696
PpsI GAGTC 2 cut(s) 310, 1992
Ppu21I YACGTR 2 cut(s) 696, 1927
PpuMI RGGWCCY 1 cut(s) 256
PscI ACATGT 2 cut(s) 1566, 2162
PshBI ATTAAT 1 cut(s) 1455
PsiI TTATAA 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 759
PspCI CACGTG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 759
PspLI CGTACG 1 cut(s) 1977
PspPI GGNCC 1 cut(s) 256
PspPPI RGGWCCY 1 cut(s) 256
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
PstI CTGCAG 1 cut(s) 993
RsaI GTAC 6 cut(s) 358, 932, 1571, 1931, 1979, 2167
RsaNI GTAC 6 cut(s) 357, 931, 1570, 1930, 1978, 2166
RseI CAYNNNNRTG 4 cut(s) 370, 897, 1667, 1770
SatI GCNGC 9 cut(s) 176, 315, 534, 1109, 1443, 1762, 1997, 2000, 2069
Sau3AI GATC 5 cut(s) 286, 766, 985, 1405, 2030
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 2 cut(s) 311, 1993
ScrFI CCNGG 2 cut(s) 761, 1126
SduI GDGCHC 6 cut(s) 162, 377, 701, 859, 1489, 1891
SfaNI GCATC 3 cut(s) 326, 1066, 1364
SfcI CTRYAG 3 cut(s) 989, 1375, 1966
SfuI TTCGAA 1 cut(s) 1909
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 4 cut(s) 370, 897, 1667, 1770
SpeI ACTAGT 1 cut(s) 701
SsiI CCGC 5 cut(s) 1694, 1762, 1997, 2018, 2057
SspMI CTAG 2 cut(s) 12, 702
StyD4I CCNGG 2 cut(s) 759, 1124
TaaI ACNGT 4 cut(s) 46, 1562, 1579, 1828
TaiI ACGT 5 cut(s) 146, 583, 698, 1607, 1929
TaqI TCGA 4 cut(s) 1555, 1800, 1909, 2128
TaqII GACCGA 2 cut(s) 467, 1410
TatI WGTACW 3 cut(s) 1569, 1929, 2165
TauI GCSGC 2 cut(s) 1764, 1999
TfiI GAWTC 1 cut(s) 1647
TscAI CASTG 3 cut(s) 592, 1567, 1582
TseFI GTSAC 2 cut(s) 963, 1562
TseI GCWGC 7 cut(s) 175, 314, 533, 1108, 1442, 1999, 2068
Tsp45I GTSAC 2 cut(s) 963, 1562
TspGWI ACGGA 4 cut(s) 764, 1451, 1659, 1769
TspRI CASTG 3 cut(s) 592, 1567, 1582
VneI GTGCAC 3 cut(s) 373, 697, 855
VpaK11BI GGWCC 1 cut(s) 256
VspI ATTAAT 1 cut(s) 1455
XapI RAATTY 5 cut(s) 506, 1213, 1382, 1510, 1915
XceI RCATGY 3 cut(s) 638, 1570, 2166
XcmI CCANNNNNNNNNTGG 1 cut(s) 1524
XmiI GTMKAC 1 cut(s) 631
XmnI GAANNNNTTC 4 cut(s) 1291, 1512, 1590, 1915
XspI CTAG 2 cut(s) 12, 702
Zsp2I ATGCAT 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.