Rmu_sc0001417.1_g000009

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001417.1
OG0000043
Physical Location & Seq
Reverse (-)
17441 .. 18598
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001417.1_g000009.1.cds

Sequence Viewer

Length: 897 bp
atgtgggatgcaggctgttcttctgatgccttatcagccctctactgtgtaatcagatgggctgtgctagccatgcccgggccctgggtgcccggcgtgacatcccatatgagccccgccatggtgggtcgtgaacccggccagtggcatagtacttgggagtcccgatgggccccagtcgatagtgtcaaacctagtgaagacttccctagtatgtacagtgatcgtgatgttggactattgagtgctttcgacaagatattttatgattcatttcttgctaattttcctgttcaaaattggtgtcgagcatttttccctggatgccgttatggaattatgactaatagtgtagctgaatcttttaatgcttggttttctgttgagcgtgagatgccagtatacactatgcttgatcagactcggattaaggtgatgcagatgatgggtatggagaaagcttgcggtttcaatgtgcattattcccatacaaatgtttatgaagtgaggtcaaagtattcttatgttctggaccttgaaactctttcttgctcgagtaaaaaatgggagattaactgctttccttgctgccatggtcttgctgcaattcaagctgcctcattggatgtttatgcttttatagataagcattttcatgttgattattgccagaagtgctatgattttccaatttatccaatttctaatgttgatatggtttcttcagaatctgctagcaatgacttcattcttcctccaaattcaaagagacctcccgggaagcctaggctcaagaggttcaaatctagaggagagtgtgaaaagaagctcattcgttgcggtcgatgtggcaaaatgggacagcataacaagaagacctgcactgaacctatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

298

Amino Acids

33.97

Weight (kDa)

8.12

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27871 FvH4_1g29590 FvH4_1g29591 FvH4_1g29862 FvH4_2g00085 FvH4_2g02783 FvH4_2g02910 FvH4_2g18181 FvH4_2g24333 FvH4_3g06732 FvH4_3g17131 FvH4_3g20061 FvH4_3g20062 FvH4_3g24441 FvH4_3g24443 FvH4_3g24443 FvH4_3g24500 FvH4_3g24740 FvH4_3g25230 FvH4_3g26060 FvH4_3g27583 FvH4_3g32421 FvH4_3g35812 FvH4_3g38841 FvH4_3g40971 FvH4_3g44613 FvH4_3g44614 FvH4_3g44615 FvH4_4g04920 FvH4_4g07822 FvH4_4g08151 FvH4_4g08160 FvH4_4g08531 FvH4_4g09200 FvH4_4g09692 FvH4_4g10062 FvH4_4g10530 FvH4_5g03091 FvH4_5g03092 FvH4_5g06862 FvH4_5g06863 FvH4_5g07920 FvH4_5g17871 FvH4_5g17872 FvH4_5g23321 FvH4_5g24281 FvH4_5g24391 FvH4_5g28463 FvH4_5g34083 FvH4_6g06701 FvH4_6g20107 FvH4_6g20143 FvH4_6g22012 FvH4_6g22551 FvH4_6g31341 FvH4_6g33561 FvH4_6g33592 FvH4_6g34232 FvH4_6g34233 FvH4_6g37972 FvH4_6g37972 FvH4_6g37972 FvH4_6g39191 FvH4_6g39681 FvH4_6g45872 FvH4_7g01581 FvH4_7g02154 FvH4_7g03472 FvH4_7g07292 FvH4_7g07293 FvH4_7g20282 FvH4_7g30371
malus_domestica MD01G1221900.v1.1 MD03G1052700.v1.1 MD05G1118500.v1.1 MD10G1135700.v1.1 MD11G1161900.v1.1 MD12G1093400.v1.1 MD15G1409800.v1.1 MD16G1228000.v1.1
pyrus_communis pycom03g04970 pycom08g16190 pycom09g07650 pycom10g14400 pycom11g09170 pycom11g11100 pycom11g11120 pycom11g13240 pycom11g21780 pycom12g16560 pycom13g08440 pycom14g00770 pycom14g07540 pycom17g09330
rosa_chinensis RchiOBHm_Chr1g0318421 RchiOBHm_Chr1g0318431 RchiOBHm_Chr1g0327211 RchiOBHm_Chr1g0334951 RchiOBHm_Chr1g0343051 RchiOBHm_Chr1g0347471 RchiOBHm_Chr2g0084481 RchiOBHm_Chr2g0095011 RchiOBHm_Chr2g0096851 RchiOBHm_Chr2g0127961 RchiOBHm_Chr2g0130281 RchiOBHm_Chr2g0133091 RchiOBHm_Chr2g0173591 RchiOBHm_Chr3g0453251 RchiOBHm_Chr4g0384731 RchiOBHm_Chr4g0384871 RchiOBHm_Chr4g0422481 RchiOBHm_Chr5g0012141 RchiOBHm_Chr5g0019851 RchiOBHm_Chr5g0038651 RchiOBHm_Chr5g0042901 RchiOBHm_Chr5g0043951 RchiOBHm_Chr6g0253561 RchiOBHm_Chr7g0213551 RchiOBHm_Chr7g0220031 RchiOBHm_Chr7g0221581 RchiOBHm_Chr7g0230091 RchiOBHm_Chr7g0235291
rosa_laevigata RLG00000001336 RLG00000002469 RLG00000008084 RLG00000009350 RLG00000012956 RLG00000014177 RLG00000016845 RLG00000017722 RLG00000018937 RLG00000018957 RLG00000031697 RLG00000032070 RLG00000034648
rosa_multiflora Rmu_co8164630.1_g000001 Rmu_co8485123.1_g000001 Rmu_sc0000023.1_g000003 Rmu_sc0000068.1_g000010 Rmu_sc0000084.1_g000004 Rmu_sc0000186.1_g000020 Rmu_sc0000258.1_g000043 Rmu_sc0000305.1_g000013 Rmu_sc0000305.1_g000014 Rmu_sc0000340.1_g000040 Rmu_sc0000452.1_g000008 Rmu_sc0000470.1_g000022 Rmu_sc0000570.1_g000013 Rmu_sc0000570.1_g000014 Rmu_sc0000765.1_g000038 Rmu_sc0000774.1_g000029 Rmu_sc0000805.1_g000011 Rmu_sc0000830.1_g000067 Rmu_sc0000831.1_g000008 Rmu_sc0000918.1_g000005 Rmu_sc0000982.1_g000024 Rmu_sc0000982.1_g000025 Rmu_sc0001035.1_g000071 Rmu_sc0001035.1_g000072 Rmu_sc0001068.1_g000017 Rmu_sc0001136.1_g000015 Rmu_sc0001136.1_g000016 Rmu_sc0001386.1_g000028 Rmu_sc0001417.1_g000009 Rmu_sc0001598.1_g000010 Rmu_sc0001886.1_g000001 Rmu_sc0002129.1_g000043 Rmu_sc0002162.1_g000012 Rmu_sc0002252.1_g000006 Rmu_sc0002321.1_g000003 Rmu_sc0002344.1_g000013 Rmu_sc0002344.1_g000015 Rmu_sc0002592.1_g000004 Rmu_sc0002592.1_g000005 Rmu_sc0002691.1_g000042 Rmu_sc0002786.1_g000023 Rmu_sc0002845.1_g000019 Rmu_sc0002968.1_g000022 Rmu_sc0002988.1_g000001 Rmu_sc0003131.1_g000015 Rmu_sc0003180.1_g000017 Rmu_sc0003275.1_g000005 Rmu_sc0003275.1_g000075 Rmu_sc0003337.1_g000008 Rmu_sc0003830.1_g000005 Rmu_sc0004032.1_g000018 Rmu_sc0004277.1_g000068 Rmu_sc0004366.1_g000003 Rmu_sc0004371.1_g000005 Rmu_sc0004413.1_g000040 Rmu_sc0004898.1_g000009 Rmu_sc0004898.1_g000010 Rmu_sc0004929.1_g000002 Rmu_sc0005065.1_g000007 Rmu_sc0005065.1_g000008 Rmu_sc0005261.1_g000010 Rmu_sc0005375.1_g000019 Rmu_sc0005497.1_g000012 Rmu_sc0005704.1_g000001 Rmu_sc0005834.1_g000013 Rmu_sc0006076.1_g000004 Rmu_sc0006311.1_g000010 Rmu_sc0006669.1_g000018 Rmu_sc0006720.1_g000005 Rmu_sc0006841.1_g000002 Rmu_sc0006854.1_g000004 Rmu_sc0006854.1_g000005 Rmu_sc0006999.1_g000008 Rmu_sc0007415.1_g000001 Rmu_sc0007415.1_g000031 Rmu_sc0007650.1_g000004 Rmu_sc0007754.1_g000003 Rmu_sc0007912.1_g000004 Rmu_sc0007912.1_g000005 Rmu_sc0008429.1_g000004 Rmu_sc0009780.1_g000018 Rmu_sc0010062.1_g000002 Rmu_sc0010104.1_g000001 Rmu_sc0010647.1_g000002 Rmu_sc0010824.1_g000009 Rmu_sc0011112.1_g000010 Rmu_sc0013354.1_g000004 Rmu_sc0014685.1_g000005 Rmu_sc0014685.1_g000006 Rmu_sc0014882.1_g000002 Rmu_sc0019879.1_g000004 Rmu_sc0020359.1_g000006 Rmu_sc0020945.1_g000003 Rmu_sc0023467.1_g000001 Rmu_sc0025019.1_g000001 Rmu_sc0026446.1_g000002 Rmu_sc0027500.1_g000001 Rmu_sc0027830.1_g000001 Rmu_sc0028318.1_g000001 Rmu_sc0028858.1_g000002 Rmu_sc0031772.1_g000001 Rmu_sc0032192.1_g000001 Rmu_sc0033789.1_g000001 Rmu_sc0034922.1_g000001 Rmu_ssc0000295.1_g000057 Rmu_ssc0000309.1_g000034 Rmu_ssc0000420.1_g000035 Rmu_ssc0000423.1_g000017 Rmu_ssc0000470.1_g000004
rosa_roxburghii Rroxscaffold_1G00016870 Rroxscaffold_1G00024230 Rroxscaffold_1G00037110 Rroxscaffold_1G00037130 Rroxscaffold_2G00137090 Rroxscaffold_2G00137100 Rroxscaffold_3G00221680 Rroxscaffold_3G00224180 Rroxscaffold_3G00226070 Rroxscaffold_4G00291380 Rroxscaffold_4G00293060 Rroxscaffold_4G00319010 Rroxscaffold_5G00347090 Rroxscaffold_5G00355090 Rroxscaffold_5G00356950 Rroxscaffold_7G00193500 Rroxscaffold_7G00207010 Rroxscaffold_7G00207130 Rroxscaffold_7G00207140
rosa_rugosa Rorug01G0086400.1 Rorug01G0087900 Rorug01G0095400 Rorug01G0105300 Rorug01G0107000 Rorug01G0152600.1 Rorug01G0152700.1 Rorug02G0010200 Rorug02G0010200 Rorug02G0157800 Rorug02G0157900 Rorug02G0248300 Rorug02G0249100 Rorug02G0249200 Rorug02G0277800 Rorug02G0277900 Rorug02G0324700 Rorug02G0330600 Rorug02G0510200 Rorug03G0162000 Rorug03G0171700 Rorug03G0189100 Rorug03G0267900 Rorug03G0339000 Rorug04G0012700 Rorug04G0050900 Rorug04G0152300 Rorug04G0283700 Rorug05G0043600 Rorug05G0151200 Rorug05G0152700 Rorug05G0158400 Rorug05G0209100 Rorug05G0209100 Rorug05G0224900 Rorug05G0227700 Rorug05G0244300.1 Rorug05G0251800 Rorug05G0293600 Rorug05G0335900 Rorug05G0582400 Rorug06G0045400 Rorug06G0063700 Rorug06G0082300 Rorug06G0173900 Rorug06G0190800 Rorug06G0480100 Rorug07G0057100 Rorug07G0117700 Rorug07G0148300 Rorug07G0190900
rosa_samantha Rh1BG184600 Rh1CG100800 Rh1CG353300 Rh1DG147400 Rh1DG214200 Rh2AG491700 Rh2BG022000 Rh2BG196400 Rh2BG209900 Rh2BG331800 Rh2CG478100 Rh2DG096100 Rh2DG303100 Rh3AG125300 Rh3AG335300 Rh3BG274800 Rh3CG243100 Rh3CG243200 Rh3CG243300 Rh3CG365100 Rh3CG369400 Rh3DG341600 Rh3DG370500 Rh4AG060300 Rh4AG088400 Rh4AG357100 Rh4CG308700 Rh4CG440700 Rh4DG362800 Rh4DG421700 Rh5AG182900 Rh5AG284500 Rh5AG293500 Rh5AG440000 Rh5AG445200 Rh5AG512000 Rh5AG522000 Rh5BG294100 Rh5BG301500 Rh5BG347300 Rh5CG103200 Rh5CG155400 Rh5CG212800 Rh5CG231400 Rh5CG253700 Rh5CG329100 Rh5CG471500 Rh5DG304000 Rh5DG310700 Rh5DG466000 Rh6AG473800 Rh6BG022600 Rh6BG120300 Rh6BG292800 Rh6CG118500 Rh6CG366400 Rh6DG106900 Rh7BG324000 Rh7BG382800 Rh7DG221900 Rh7DG256900 Rh7DG259800 Rh7DG259900 Rh7DG329400 Rh7DG329500 Rh7DG351700 Rh7DG351800
rosa_wichuraiana Rw0G008220 Rw0G010100 Rw0G011420 Rw0G017230 Rw0G017240 Rw0G023340 Rw1G007820 Rw1G019090 Rw1G019100 Rw1G026940 Rw2G002550 Rw2G018570 Rw2G021650 Rw2G024850 Rw2G036390 Rw2G041200 Rw2G042490 Rw3G024200 Rw3G027660 Rw3G029100 Rw3G029110 Rw4G005930 Rw4G010720 Rw4G014560 Rw4G017210 Rw4G020740 Rw5G003740 Rw5G008130 Rw5G011060 Rw5G012210 Rw5G014240 Rw5G015950 Rw5G016590 Rw5G017570 Rw5G019040 Rw5G027200 Rw5G030010 Rw5G036030 Rw6G001380 Rw6G001420 Rw6G006520 Rw6G007020 Rw6G009200 Rw6G009300 Rw6G020110 Rw6G023690 Rw6G030650 Rw6G041310 Rw7G005190 Rw7G012150 Rw7G014860 Rw7G014870 Rw7G020130 Rw7G024500 Rw7G029450 Rw7G029460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 887
AccB1I GGYRCC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 402
AciI CCGC 3 cut(s) 117, 465, 840
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 760
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 2 cut(s) 154, 218
AfiI CCNNNNNNNGG 4 cut(s) 78, 84, 121, 144
AgsI TTSAA 6 cut(s) 296, 472, 539, 611, 765, 802
AjnI CCWGG 2 cut(s) 83, 319
AluBI AGCT 4 cut(s) 356, 461, 614, 829
AluI AGCT 4 cut(s) 356, 461, 614, 829
Alw26I GTCTC 1 cut(s) 763
AlwNI CAGNNNCTG 1 cut(s) 731
Ama87I CYCGRG 3 cut(s) 77, 553, 776
AoxI GGCC 3 cut(s) 80, 139, 171
ApaI GGGCCC 2 cut(s) 84, 175
ApeKI GCWGC 3 cut(s) 588, 602, 614
ApoI RAATTY 1 cut(s) 760
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
AspA2I CCTAGG 1 cut(s) 785
AspS9I GGNCC 5 cut(s) 80, 81, 171, 172, 532
AsuC2I CCSGG 6 cut(s) 78, 79, 93, 138, 777, 778
AsuHPI GGTGA 1 cut(s) 445
AsuNHI GCTAGC 2 cut(s) 67, 734
AvaI CYCGRG 3 cut(s) 77, 553, 776
AvaII GGWCC 1 cut(s) 532
AvrII CCTAGG 1 cut(s) 785
BaeGI GKGCMC 3 cut(s) 84, 93, 175
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 3 cut(s) 84, 116, 175
BbsI GAAGAC 2 cut(s) 207, 881
BbvI GCAGC 3 cut(s) 575, 589, 601
BccI CCATC 3 cut(s) 51, 162, 439
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 2 cut(s) 85, 321
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 6 cut(s) 78, 79, 93, 138, 777, 778
BcoDI GTCTC 1 cut(s) 763
BfaI CTAG 6 cut(s) 68, 195, 210, 735, 786, 807
BfuAI ACCTGC 1 cut(s) 887
BisI GCNGC 3 cut(s) 589, 603, 615
BlnI CCTAGG 1 cut(s) 785
BlsI GCNGC 3 cut(s) 590, 604, 616
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 8 cut(s) 78, 79, 85, 93, 138, 321, 777, 778
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 3 cut(s) 77, 553, 776
BmgT120I GGNCC 5 cut(s) 80, 81, 171, 172, 532
BmiI GGNNCC 4 cut(s) 82, 90, 173, 174
BmrFI CCNGG 8 cut(s) 78, 79, 85, 93, 138, 321, 777, 778
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 4 cut(s) 16, 314, 384, 426
BmtI GCTAGC 2 cut(s) 71, 738
BmuI ACTGGG 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 207, 881
BpuEI CTTGAG 1 cut(s) 776
BpuMI CCSGG 6 cut(s) 78, 79, 93, 138, 777, 778
BsaI GGTCTC 1 cut(s) 763
BsaJI CCNNGG 8 cut(s) 77, 83, 84, 120, 319, 592, 776, 785
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 84, 121, 144
Bse1I ACTGG 3 cut(s) 142, 176, 398
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 2 cut(s) 85, 321
BseDI CCNNGG 8 cut(s) 77, 83, 84, 120, 319, 592, 776, 785
BseGI GGATG 4 cut(s) 13, 101, 329, 631
BseLI CCNNNNNNNGG 4 cut(s) 78, 84, 121, 144
BseMI GCAATG 1 cut(s) 745
BseNI ACTGG 3 cut(s) 142, 176, 398
BseRI GAGGAG 1 cut(s) 825
BseSI GKGCMC 3 cut(s) 84, 93, 175
BseXI GCAGC 3 cut(s) 575, 589, 601
BsgI GTGCAG 1 cut(s) 865
Bsh1285I CGRYCG 1 cut(s) 844
BshFI GGCC 3 cut(s) 82, 141, 173
BshNI GGYRCC 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 844
BsiHKCI CYCGRG 3 cut(s) 77, 553, 776
BsiSI CCGG 4 cut(s) 78, 93, 138, 777
BslFI GGGAC 2 cut(s) 148, 873
BslI CCNNNNNNNGG 4 cut(s) 78, 84, 121, 144
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 2 cut(s) 148, 873
BsnI GGCC 3 cut(s) 82, 141, 173
Bso31I GGTCTC 1 cut(s) 763
BsoBI CYCGRG 3 cut(s) 77, 553, 776
Bsp120I GGGCCC 2 cut(s) 80, 171
Bsp1286I GDGCHC 4 cut(s) 84, 93, 116, 175
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 2 cut(s) 223, 415
Bsp19I CCATGG 2 cut(s) 120, 592
BspACI CCGC 3 cut(s) 117, 465, 840
BspANI GGCC 3 cut(s) 82, 141, 173
BspLI GGNNCC 4 cut(s) 82, 90, 173, 174
BspMI ACCTGC 1 cut(s) 887
BspOI GCTAGC 2 cut(s) 71, 738
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 763
BsrDI GCAATG 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 3 cut(s) 142, 176, 398
BssECI CCNNGG 8 cut(s) 77, 83, 84, 120, 319, 592, 776, 785
BssMI GATC 2 cut(s) 223, 415
BssNAI GTATAC 1 cut(s) 403
BssT1I CCWWGG 3 cut(s) 120, 592, 785
Bst1107I GTATAC 1 cut(s) 403
Bst2UI CCWGG 2 cut(s) 85, 321
Bst4CI ACNGT 2 cut(s) 47, 221
BstAUI TGTACA 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 13, 69, 463, 736
BstDSI CCRYGG 2 cut(s) 120, 592
BstF5I GGATG 4 cut(s) 13, 101, 329, 631
BstKTI GATC 2 cut(s) 226, 418
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 2 cut(s) 223, 415
BstMCI CGRYCG 1 cut(s) 844
BstMWI GCNNNNNNNGC 8 cut(s) 35, 68, 73, 88, 394, 585, 611, 675
BstNI CCWGG 2 cut(s) 85, 321
BstSCI CCNGG 8 cut(s) 76, 77, 83, 91, 136, 319, 775, 776
BstSLI GKGCMC 3 cut(s) 84, 93, 175
BstV1I GCAGC 3 cut(s) 575, 589, 601
BstV2I GAAGAC 2 cut(s) 207, 881
BstZ17I GTATAC 1 cut(s) 403
BsuRI GGCC 3 cut(s) 82, 141, 173
BtgI CCRYGG 2 cut(s) 120, 592
BtsCI GGATG 4 cut(s) 13, 101, 329, 631
BtsIMutI CAGTG 3 cut(s) 149, 226, 882
BveI ACCTGC 1 cut(s) 887
Cac8I GCNNGC 4 cut(s) 13, 69, 463, 736
CaiI CAGNNNCTG 1 cut(s) 731
Cfr13I GGNCC 5 cut(s) 80, 81, 171, 172, 532
Cfr9I CCCGGG 2 cut(s) 77, 776
Csp6I GTAC 2 cut(s) 153, 217
CviAII CATG 4 cut(s) 73, 121, 593, 656
CviQI GTAC 2 cut(s) 153, 217
DpnI GATC 2 cut(s) 225, 417
DpnII GATC 2 cut(s) 223, 415
EaeI YGGCCR 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 120, 592, 785
Eco24I GRGCYC 3 cut(s) 84, 116, 175
Eco31I GGTCTC 1 cut(s) 763
Eco47I GGWCC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 708
Eco88I CYCGRG 3 cut(s) 77, 553, 776
EcoO109I RGGNCCY 2 cut(s) 81, 172
EcoRII CCWGG 2 cut(s) 83, 319
EcoT14I CCWWGG 3 cut(s) 120, 592, 785
EcoT38I GRGCYC 3 cut(s) 84, 116, 175
ErhI CCWWGG 3 cut(s) 120, 592, 785
FaeI CATG 4 cut(s) 76, 124, 596, 659
FaqI GGGAC 2 cut(s) 148, 873
FatI CATG 4 cut(s) 72, 120, 592, 655
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 589, 603, 615
FokI GGATG 4 cut(s) 20, 88, 336, 638
FriOI GRGCYC 3 cut(s) 84, 116, 175
Fsp4HI GCNGC 3 cut(s) 589, 603, 615
FspBI CTAG 6 cut(s) 68, 195, 210, 735, 786, 807
GluI GCNGC 3 cut(s) 589, 603, 615
HaeIII GGCC 3 cut(s) 82, 141, 173
HapII CCGG 4 cut(s) 78, 93, 138, 777
Hin1II CATG 4 cut(s) 76, 124, 596, 659
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 5 cut(s) 161, 269, 359, 421, 728
HpaII CCGG 4 cut(s) 78, 93, 138, 777
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 134, 403
Hpy188I TCNGA 5 cut(s) 25, 56, 420, 426, 727
Hpy188III TCNNGA 6 cut(s) 131, 165, 227, 530, 793, 807
Hpy8I GTNNAC 2 cut(s) 134, 403
HpyCH4III ACNGT 2 cut(s) 47, 221
HpyCH4V TGCA 5 cut(s) 11, 439, 478, 605, 882
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 68, 73, 88, 394, 585, 611, 675
Hsp92II CATG 4 cut(s) 76, 124, 596, 659
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 2 cut(s) 223, 415
Lsp1109I GCAGC 3 cut(s) 575, 589, 601
LweI GCATC 4 cut(s) 16, 314, 384, 426
MaeI CTAG 6 cut(s) 68, 195, 210, 735, 786, 807
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 225, 417
MboI GATC 2 cut(s) 223, 415
MboII GAAGA 5 cut(s) 12, 212, 714, 743, 886
MhlI GDGCHC 4 cut(s) 84, 93, 116, 175
MluCI AATT 7 cut(s) 283, 298, 336, 606, 690, 699, 760
MlyI GAGTC 2 cut(s) 170, 415
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 7 cut(s) 50, 501, 628, 765, 783, 789, 803
MseI TTAA 3 cut(s) 366, 429, 573
MslI CAYNNNNRTG 2 cut(s) 492, 654
MspI CCGG 4 cut(s) 78, 93, 138, 777
MspR9I CCNGG 8 cut(s) 78, 79, 85, 93, 138, 321, 777, 778
MvaI CCWGG 2 cut(s) 85, 321
MwoI GCNNNNNNNGC 8 cut(s) 35, 68, 73, 88, 394, 585, 611, 675
NciI CCSGG 6 cut(s) 78, 79, 93, 138, 777, 778
NcoI CCATGG 2 cut(s) 120, 592
NdeI CATATG 1 cut(s) 108
NdeII GATC 2 cut(s) 223, 415
NheI GCTAGC 2 cut(s) 67, 734
NlaIII CATG 4 cut(s) 76, 124, 596, 659
NlaIV GGNNCC 4 cut(s) 82, 90, 173, 174
NmuCI GTSAC 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 553
PasI CCCWGGG 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 841
PfeI GAWTC 3 cut(s) 269, 359, 728
PkrI GCNGC 3 cut(s) 590, 604, 616
PleI GAGTC 2 cut(s) 169, 415
PpsI GAGTC 2 cut(s) 169, 415
Psp6I CCWGG 2 cut(s) 83, 319
PspGI CCWGG 2 cut(s) 83, 319
PspN4I GGNNCC 4 cut(s) 82, 90, 173, 174
PspOMI GGGCCC 2 cut(s) 80, 171
PspPI GGNCC 5 cut(s) 80, 81, 171, 172, 532
PspXI VCTCGAGB 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 731
RsaI GTAC 2 cut(s) 154, 218
RsaNI GTAC 2 cut(s) 153, 217
RseI CAYNNNNRTG 2 cut(s) 492, 654
SaqAI TTAA 3 cut(s) 366, 429, 573
SatI GCNGC 3 cut(s) 589, 603, 615
Sau3AI GATC 2 cut(s) 223, 415
Sau96I GGNCC 5 cut(s) 80, 81, 171, 172, 532
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 2 cut(s) 170, 415
ScrFI CCNGG 8 cut(s) 78, 79, 85, 93, 138, 321, 777, 778
SduI GDGCHC 4 cut(s) 84, 93, 116, 175
SfaNI GCATC 4 cut(s) 16, 314, 384, 426
Sfr274I CTCGAG 1 cut(s) 553
SinI GGWCC 1 cut(s) 532
SlaI CTCGAG 1 cut(s) 553
SmaI CCCGGG 2 cut(s) 79, 778
SmiMI CAYNNNNRTG 2 cut(s) 492, 654
SmlI CTYRAG 2 cut(s) 553, 791
SmoI CTYRAG 2 cut(s) 553, 791
SrfI GCCCGGGC 1 cut(s) 79
Sse9I AATT 7 cut(s) 283, 298, 336, 606, 690, 699, 760
SsiI CCGC 3 cut(s) 117, 465, 840
SspMI CTAG 6 cut(s) 68, 195, 210, 735, 786, 807
StyD4I CCNGG 8 cut(s) 76, 77, 83, 91, 136, 319, 775, 776
StyI CCWWGG 3 cut(s) 120, 592, 785
TaaI ACNGT 2 cut(s) 47, 221
TaqI TCGA 5 cut(s) 180, 252, 307, 554, 844
TasI AATT 7 cut(s) 283, 298, 336, 606, 690, 699, 760
TatI WGTACW 2 cut(s) 152, 216
TfiI GAWTC 3 cut(s) 269, 359, 728
Tru1I TTAA 3 cut(s) 366, 429, 573
Tru9I TTAA 3 cut(s) 366, 429, 573
TscAI CASTG 3 cut(s) 149, 226, 889
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 3 cut(s) 588, 602, 614
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 4 cut(s) 261, 516, 644, 736
TspMI CCCGGG 2 cut(s) 77, 776
TspRI CASTG 3 cut(s) 149, 226, 889
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 760
XbaI TCTAGA 1 cut(s) 806
XhoI CTCGAG 1 cut(s) 553
XmaI CCCGGG 2 cut(s) 77, 776
XmaJI CCTAGG 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 6 cut(s) 68, 195, 210, 735, 786, 807
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.