isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 876 |
| AccI | GTMKAC | 1 cut(s) | 213 |
| AciI | CCGC | 1 cut(s) | 1091 |
| AclWI | GGATC | 5 cut(s) | 13, 507, 624, 1009, 1036 |
| AcsI | RAATTY | 3 cut(s) | 473, 853, 940 |
| AcuI | CTGAAG | 2 cut(s) | 351, 866 |
| AfaI | GTAC | 6 cut(s) | 121, 136, 647, 926, 1061, 1231 |
| AflII | CTTAAG | 1 cut(s) | 494 |
| AgsI | TTSAA | 5 cut(s) | 562, 700, 721, 777, 836 |
| AjnI | CCWGG | 1 cut(s) | 1172 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 839, 871 |
| AluBI | AGCT | 9 cut(s) | 77, 173, 190, 255, 482, 844, 979, 1057, 1235 |
| AluI | AGCT | 9 cut(s) | 77, 173, 190, 255, 482, 844, 979, 1057, 1235 |
| Alw26I | GTCTC | 1 cut(s) | 585 |
| AlwI | GGATC | 5 cut(s) | 13, 507, 624, 1009, 1036 |
| AoxI | GGCC | 1 cut(s) | 1133 |
| ApeKI | GCWGC | 3 cut(s) | 782, 976, 1102 |
| ApoI | RAATTY | 3 cut(s) | 473, 853, 940 |
| AseI | ATTAAT | 1 cut(s) | 744 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1148 |
| AsuC2I | CCSGG | 1 cut(s) | 1128 |
| AsuHPI | GGTGA | 3 cut(s) | 680, 1105, 1189 |
| BaeGI | GKGCMC | 1 cut(s) | 827 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 885, 918 |
| BamHI | GGATCC | 1 cut(s) | 5 |
| BbsI | GAAGAC | 2 cut(s) | 719, 1126 |
| BbvI | GCAGC | 3 cut(s) | 769, 988, 1114 |
| BccI | CCATC | 3 cut(s) | 448, 743, 1202 |
| BceAI | ACGGC | 1 cut(s) | 670 |
| BciT130I | CCWGG | 1 cut(s) | 1174 |
| BciVI | GTATCC | 1 cut(s) | 270 |
| BclI | TGATCA | 1 cut(s) | 1179 |
| BcnI | CCSGG | 1 cut(s) | 1128 |
| BcoDI | GTCTC | 1 cut(s) | 585 |
| BfaI | CTAG | 3 cut(s) | 408, 1116, 1137 |
| BfrI | CTTAAG | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 1 cut(s) | 876 |
| BfuI | GTATCC | 1 cut(s) | 270 |
| BisI | GCNGC | 3 cut(s) | 783, 977, 1103 |
| BlsI | GCNGC | 3 cut(s) | 784, 978, 1104 |
| Bme1390I | CCNGG | 2 cut(s) | 1128, 1174 |
| BmiI | GGNNCC | 1 cut(s) | 7 |
| BmrFI | CCNGG | 2 cut(s) | 1128, 1174 |
| BmrI | ACTGGG | 1 cut(s) | 821 |
| BmsI | GCATC | 3 cut(s) | 222, 787, 1078 |
| BmuI | ACTGGG | 1 cut(s) | 821 |
| BpiI | GAAGAC | 2 cut(s) | 719, 1126 |
| BpmI | CTGGAG | 1 cut(s) | 632 |
| BpuEI | CTTGAG | 3 cut(s) | 338, 595, 786 |
| BpuMI | CCSGG | 1 cut(s) | 1128 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 768, 1173 |
| BsaWI | WCCGGW | 1 cut(s) | 544 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 571, 582, 601, 612, 620, 650 |
| Bse1I | ACTGG | 2 cut(s) | 638, 827 |
| BseBI | CCWGG | 1 cut(s) | 1174 |
| BseDI | CCNNGG | 3 cut(s) | 9, 768, 1173 |
| BseGI | GGATG | 2 cut(s) | 112, 802 |
| BseMII | CTCAG | 4 cut(s) | 165, 200, 681, 807 |
| BseNI | ACTGG | 2 cut(s) | 638, 827 |
| BseRI | GAGGAG | 2 cut(s) | 370, 592 |
| BseSI | GKGCMC | 1 cut(s) | 827 |
| BseXI | GCAGC | 3 cut(s) | 769, 988, 1114 |
| BsgI | GTGCAG | 1 cut(s) | 1216 |
| BshFI | GGCC | 1 cut(s) | 1135 |
| BsiSI | CCGG | 2 cut(s) | 545, 1127 |
| BsmAI | GTCTC | 1 cut(s) | 585 |
| BsnI | GGCC | 1 cut(s) | 1135 |
| Bsp1286I | GDGCHC | 1 cut(s) | 827 |
| Bsp1407I | TGTACA | 2 cut(s) | 1059, 1229 |
| Bsp143I | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| Bsp19I | CCATGG | 1 cut(s) | 768 |
| BspACI | CCGC | 1 cut(s) | 1091 |
| BspANI | GGCC | 1 cut(s) | 1135 |
| BspCNI | CTCAG | 4 cut(s) | 166, 199, 682, 808 |
| BspLI | GGNNCC | 1 cut(s) | 7 |
| BspMI | ACCTGC | 1 cut(s) | 876 |
| BspPI | GGATC | 5 cut(s) | 13, 507, 624, 1009, 1036 |
| BspTI | CTTAAG | 1 cut(s) | 494 |
| BsrGI | TGTACA | 2 cut(s) | 1059, 1229 |
| BsrI | ACTGG | 2 cut(s) | 638, 827 |
| BssECI | CCNNGG | 3 cut(s) | 9, 768, 1173 |
| BssMI | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| BssT1I | CCWWGG | 2 cut(s) | 9, 768 |
| Bst2UI | CCWGG | 1 cut(s) | 1174 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| Bst6I | CTCTTC | 3 cut(s) | 327, 716, 1139 |
| BstAFI | CTTAAG | 1 cut(s) | 494 |
| BstAUI | TGTACA | 2 cut(s) | 1059, 1229 |
| BstC8I | GCNNGC | 1 cut(s) | 1166 |
| BstDEI | CTNAG | 4 cut(s) | 174, 186, 690, 816 |
| BstDSI | CCRYGG | 1 cut(s) | 768 |
| BstF5I | GGATG | 2 cut(s) | 112, 802 |
| BstKTI | GATC | 8 cut(s) | 8, 87, 379, 502, 619, 1017, 1031, 1182 |
| BstMAI | GTCTC | 1 cut(s) | 585 |
| BstMBI | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 152, 779 |
| BstNI | CCWGG | 1 cut(s) | 1174 |
| BstSCI | CCNGG | 2 cut(s) | 1126, 1172 |
| BstSLI | GKGCMC | 1 cut(s) | 827 |
| BstV1I | GCAGC | 3 cut(s) | 769, 988, 1114 |
| BstV2I | GAAGAC | 2 cut(s) | 719, 1126 |
| BstX2I | RGATCY | 3 cut(s) | 5, 616, 1028 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1025 |
| BstYI | RGATCY | 3 cut(s) | 5, 616, 1028 |
| BsuI | GTATCC | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 1135 |
| BtgI | CCRYGG | 1 cut(s) | 768 |
| BtsCI | GGATG | 2 cut(s) | 112, 802 |
| BtsI | GCAGTG | 1 cut(s) | 913 |
| BtsIMutI | CAGTG | 2 cut(s) | 834, 913 |
| BveI | ACCTGC | 1 cut(s) | 876 |
| Cac8I | GCNNGC | 1 cut(s) | 1166 |
| Csp6I | GTAC | 6 cut(s) | 120, 135, 646, 925, 1060, 1230 |
| CviAII | CATG | 9 cut(s) | 383, 431, 565, 769, 934, 993, 1001, 1025, 1073 |
| CviQI | GTAC | 6 cut(s) | 120, 135, 646, 925, 1060, 1230 |
| DdeI | CTNAG | 4 cut(s) | 174, 186, 690, 816 |
| DpnI | GATC | 8 cut(s) | 7, 86, 378, 501, 618, 1016, 1030, 1181 |
| DpnII | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| Eam1104I | CTCTTC | 3 cut(s) | 327, 716, 1139 |
| EarI | CTCTTC | 3 cut(s) | 327, 716, 1139 |
| Eco130I | CCWWGG | 2 cut(s) | 9, 768 |
| Eco147I | AGGCCT | 1 cut(s) | 1135 |
| Eco57I | CTGAAG | 2 cut(s) | 351, 866 |
| EcoRII | CCWGG | 1 cut(s) | 1172 |
| EcoT14I | CCWWGG | 2 cut(s) | 9, 768 |
| ErhI | CCWWGG | 2 cut(s) | 9, 768 |
| FaeI | CATG | 9 cut(s) | 386, 434, 568, 772, 937, 996, 1004, 1028, 1076 |
| FatI | CATG | 9 cut(s) | 382, 430, 564, 768, 933, 992, 1000, 1024, 1072 |
| FbaI | TGATCA | 1 cut(s) | 1179 |
| FblI | GTMKAC | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 3 cut(s) | 783, 977, 1103 |
| FokI | GGATG | 2 cut(s) | 119, 809 |
| Fsp4HI | GCNGC | 3 cut(s) | 783, 977, 1103 |
| FspBI | CTAG | 3 cut(s) | 408, 1116, 1137 |
| GluI | GCNGC | 3 cut(s) | 783, 977, 1103 |
| GsuI | CTGGAG | 1 cut(s) | 632 |
| HaeIII | GGCC | 1 cut(s) | 1135 |
| HapII | CCGG | 2 cut(s) | 545, 1127 |
| Hin1II | CATG | 9 cut(s) | 386, 434, 568, 772, 937, 996, 1004, 1028, 1076 |
| HindIII | AAGCTT | 1 cut(s) | 253 |
| HinfI | GANTC | 7 cut(s) | 40, 49, 176, 284, 505, 692, 724 |
| HpaII | CCGG | 2 cut(s) | 545, 1127 |
| HphI | GGTGA | 3 cut(s) | 680, 1105, 1189 |
| Hpy166II | GTNNAC | 2 cut(s) | 214, 913 |
| Hpy188III | TCNNGA | 6 cut(s) | 88, 317, 574, 611, 737, 803 |
| Hpy8I | GTNNAC | 2 cut(s) | 214, 913 |
| HpyAV | CCTTC | 5 cut(s) | 578, 619, 841, 861, 1125 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 1 cut(s) | 365 |
| HpyCH4V | TGCA | 5 cut(s) | 160, 341, 1072, 1102, 1197 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 152, 779 |
| HpyF3I | CTNAG | 4 cut(s) | 174, 186, 690, 816 |
| HpySE526I | ACGT | 1 cut(s) | 365 |
| Hsp92II | CATG | 9 cut(s) | 386, 434, 568, 772, 937, 996, 1004, 1028, 1076 |
| Ksp22I | TGATCA | 1 cut(s) | 1179 |
| Kzo9I | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| LmnI | GCTCC | 2 cut(s) | 1161, 1240 |
| Lsp1109I | GCAGC | 3 cut(s) | 769, 988, 1114 |
| LweI | GCATC | 3 cut(s) | 222, 787, 1078 |
| MaeI | CTAG | 3 cut(s) | 408, 1116, 1137 |
| MaeII | ACGT | 1 cut(s) | 365 |
| MaeIII | GTNAC | 2 cut(s) | 361, 1211 |
| MalI | GATC | 8 cut(s) | 7, 86, 378, 501, 618, 1016, 1030, 1181 |
| MboI | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| MboII | GAAGA | 7 cut(s) | 344, 611, 719, 733, 1023, 1131, 1156 |
| MfeI | CAATTG | 3 cut(s) | 66, 264, 777 |
| MflI | RGATCY | 3 cut(s) | 5, 616, 1028 |
| MhlI | GDGCHC | 1 cut(s) | 827 |
| MlyI | GAGTC | 3 cut(s) | 185, 701, 733 |
| MmeI | TCCRAC | 2 cut(s) | 844, 1042 |
| MnlI | CCTC | 6 cut(s) | 313, 348, 570, 607, 1116, 1140 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1148 |
| MseI | TTAA | 3 cut(s) | 495, 651, 744 |
| MslI | CAYNNNNRTG | 1 cut(s) | 165 |
| MspA1I | CMGCKG | 2 cut(s) | 482, 979 |
| MspCI | CTTAAG | 1 cut(s) | 494 |
| MspI | CCGG | 2 cut(s) | 545, 1127 |
| MspR9I | CCNGG | 2 cut(s) | 1128, 1174 |
| MunI | CAATTG | 3 cut(s) | 66, 264, 777 |
| MvaI | CCWGG | 1 cut(s) | 1174 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 152, 779 |
| NciI | CCSGG | 1 cut(s) | 1128 |
| NcoI | CCATGG | 1 cut(s) | 768 |
| NdeII | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| NlaIII | CATG | 9 cut(s) | 386, 434, 568, 772, 937, 996, 1004, 1028, 1076 |
| NlaIV | GGNNCC | 1 cut(s) | 7 |
| NmuCI | GTSAC | 2 cut(s) | 361, 1211 |
| PceI | AGGCCT | 1 cut(s) | 1135 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1148 |
| PfeI | GAWTC | 4 cut(s) | 40, 49, 284, 505 |
| PkrI | GCNGC | 3 cut(s) | 784, 978, 1104 |
| PleI | GAGTC | 3 cut(s) | 184, 700, 732 |
| PpsI | GAGTC | 3 cut(s) | 184, 700, 732 |
| PshBI | ATTAAT | 1 cut(s) | 744 |
| Psp6I | CCWGG | 1 cut(s) | 1172 |
| PspGI | CCWGG | 1 cut(s) | 1172 |
| PspN4I | GGNNCC | 1 cut(s) | 7 |
| PsuI | RGATCY | 3 cut(s) | 5, 616, 1028 |
| PvuII | CAGCTG | 2 cut(s) | 482, 979 |
| RsaI | GTAC | 6 cut(s) | 121, 136, 647, 926, 1061, 1231 |
| RsaNI | GTAC | 6 cut(s) | 120, 135, 646, 925, 1060, 1230 |
| RseI | CAYNNNNRTG | 1 cut(s) | 165 |
| SaqAI | TTAA | 3 cut(s) | 495, 651, 744 |
| SatI | GCNGC | 3 cut(s) | 783, 977, 1103 |
| Sau3AI | GATC | 8 cut(s) | 5, 84, 376, 499, 616, 1014, 1028, 1179 |
| SchI | GAGTC | 3 cut(s) | 185, 701, 733 |
| ScrFI | CCNGG | 2 cut(s) | 1128, 1174 |
| SduI | GDGCHC | 1 cut(s) | 827 |
| SfaNI | GCATC | 3 cut(s) | 222, 787, 1078 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 165 |
| SmlI | CTYRAG | 4 cut(s) | 317, 494, 574, 801 |
| SmoI | CTYRAG | 4 cut(s) | 317, 494, 574, 801 |
| SseBI | AGGCCT | 1 cut(s) | 1135 |
| SsiI | CCGC | 1 cut(s) | 1091 |
| SspMI | CTAG | 3 cut(s) | 408, 1116, 1137 |
| StuI | AGGCCT | 1 cut(s) | 1135 |
| StyD4I | CCNGG | 2 cut(s) | 1126, 1172 |
| StyI | CCWWGG | 2 cut(s) | 9, 768 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TaiI | ACGT | 1 cut(s) | 368 |
| TaqI | TCGA | 1 cut(s) | 282 |
| TatI | WGTACW | 3 cut(s) | 924, 1059, 1229 |
| TfiI | GAWTC | 4 cut(s) | 40, 49, 284, 505 |
| Tru1I | TTAA | 3 cut(s) | 495, 651, 744 |
| Tru9I | TTAA | 3 cut(s) | 495, 651, 744 |
| TscAI | CASTG | 2 cut(s) | 834, 920 |
| TseFI | GTSAC | 2 cut(s) | 361, 1211 |
| TseI | GCWGC | 3 cut(s) | 782, 976, 1102 |
| Tsp45I | GTSAC | 2 cut(s) | 361, 1211 |
| TspDTI | ATGAA | 5 cut(s) | 183, 216, 231, 358, 921 |
| TspGWI | ACGGA | 1 cut(s) | 152 |
| TspRI | CASTG | 2 cut(s) | 834, 920 |
| Vha464I | CTTAAG | 1 cut(s) | 494 |
| VspI | ATTAAT | 1 cut(s) | 744 |
| XapI | RAATTY | 3 cut(s) | 473, 853, 940 |
| XmiI | GTMKAC | 1 cut(s) | 213 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1148 |
| XspI | CTAG | 3 cut(s) | 408, 1116, 1137 |