isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1233 |
| AccB1I | GGYRCC | 1 cut(s) | 780 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 951 |
| AccBSI | CCGCTC | 1 cut(s) | 997 |
| AciI | CCGC | 5 cut(s) | 257, 604, 729, 878, 997 |
| AclWI | GGATC | 2 cut(s) | 463, 757 |
| AcuI | CTGAAG | 2 cut(s) | 480, 756 |
| AfaI | GTAC | 4 cut(s) | 540, 741, 1070, 1202 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 620, 951 |
| AgsI | TTSAA | 8 cut(s) | 70, 218, 236, 263, 379, 507, 870, 1177 |
| AluBI | AGCT | 7 cut(s) | 314, 405, 448, 464, 713, 758, 964 |
| AluI | AGCT | 7 cut(s) | 314, 405, 448, 464, 713, 758, 964 |
| AlwI | GGATC | 2 cut(s) | 463, 757 |
| AoxI | GGCC | 1 cut(s) | 1331 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 419, 451 |
| AseI | ATTAAT | 1 cut(s) | 1125 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 222 |
| AspA2I | CCTAGG | 1 cut(s) | 287 |
| AspLEI | GCGC | 1 cut(s) | 1012 |
| AspS9I | GGNCC | 2 cut(s) | 4, 152 |
| AsuHPI | GGTGA | 2 cut(s) | 1351, 1373 |
| AvaII | GGWCC | 2 cut(s) | 4, 152 |
| AvrII | CCTAGG | 1 cut(s) | 287 |
| AxyI | CCTNAGG | 1 cut(s) | 1335 |
| BanI | GGYRCC | 1 cut(s) | 780 |
| BccI | CCATC | 4 cut(s) | 131, 143, 529, 708 |
| BceAI | ACGGC | 1 cut(s) | 768 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 605, 639 |
| BfaI | CTAG | 3 cut(s) | 288, 900, 1250 |
| BlnI | CCTAGG | 1 cut(s) | 287 |
| BlpI | GCTNAGC | 1 cut(s) | 861 |
| BmcAI | AGTACT | 2 cut(s) | 741, 1070 |
| Bme18I | GGWCC | 2 cut(s) | 4, 152 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 152 |
| BmiI | GGNNCC | 1 cut(s) | 782 |
| BmrI | ACTGGG | 1 cut(s) | 514 |
| BmsI | GCATC | 6 cut(s) | 286, 563, 686, 990, 1040, 1255 |
| BmuI | ACTGGG | 1 cut(s) | 514 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 861 |
| BpuEI | CTTGAG | 1 cut(s) | 1020 |
| BsaJI | CCNNGG | 1 cut(s) | 287 |
| BsaWI | WCCGGW | 1 cut(s) | 583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 764, 794 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 620, 951 |
| Bse118I | RCCGGY | 1 cut(s) | 804 |
| Bse1I | ACTGG | 1 cut(s) | 520 |
| Bse21I | CCTNAGG | 1 cut(s) | 1335 |
| Bse3DI | GCAATG | 1 cut(s) | 891 |
| BseDI | CCNNGG | 1 cut(s) | 287 |
| BseGI | GGATG | 4 cut(s) | 540, 909, 1005, 1230 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 620, 951 |
| BseMI | GCAATG | 1 cut(s) | 891 |
| BseMII | CTCAG | 5 cut(s) | 750, 825, 852, 974, 1317 |
| BseNI | ACTGG | 1 cut(s) | 520 |
| BseRI | GAGGAG | 1 cut(s) | 1304 |
| BseYI | CCCAGC | 1 cut(s) | 348 |
| BsgI | GTGCAG | 1 cut(s) | 645 |
| Bsh1285I | CGRYCG | 1 cut(s) | 684 |
| BshFI | GGCC | 1 cut(s) | 1333 |
| BshNI | GGYRCC | 1 cut(s) | 780 |
| BsiEI | CGRYCG | 1 cut(s) | 684 |
| BsiSI | CCGG | 2 cut(s) | 584, 805 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 620, 951 |
| BsmI | GAATGC | 1 cut(s) | 865 |
| BsnI | GGCC | 1 cut(s) | 1333 |
| Bsp143I | GATC | 2 cut(s) | 455, 762 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 861 |
| BspACI | CCGC | 5 cut(s) | 257, 604, 729, 878, 997 |
| BspANI | GGCC | 1 cut(s) | 1333 |
| BspCNI | CTCAG | 5 cut(s) | 751, 826, 853, 973, 1318 |
| BspLI | GGNNCC | 1 cut(s) | 782 |
| BspPI | GGATC | 2 cut(s) | 463, 757 |
| BspT107I | GGYRCC | 1 cut(s) | 780 |
| BsrBI | CCGCTC | 1 cut(s) | 997 |
| BsrDI | GCAATG | 1 cut(s) | 891 |
| BsrFI | RCCGGY | 1 cut(s) | 804 |
| BsrI | ACTGG | 1 cut(s) | 520 |
| BssAI | RCCGGY | 1 cut(s) | 804 |
| BssECI | CCNNGG | 1 cut(s) | 287 |
| BssMI | GATC | 2 cut(s) | 455, 762 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 1 cut(s) | 1081 |
| Bst6I | CTCTTC | 2 cut(s) | 582, 977 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 871 |
| BstC8I | GCNNGC | 3 cut(s) | 882, 1282, 1323 |
| BstF5I | GGATG | 4 cut(s) | 540, 909, 1005, 1230 |
| BstHHI | GCGC | 1 cut(s) | 1012 |
| BstKTI | GATC | 2 cut(s) | 458, 765 |
| BstMBI | GATC | 2 cut(s) | 455, 762 |
| BstMCI | CGRYCG | 1 cut(s) | 684 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 422, 674, 871, 994, 1009, 1154 |
| BstX2I | RGATCY | 2 cut(s) | 455, 762 |
| BstYI | RGATCY | 2 cut(s) | 455, 762 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1335 |
| BsuRI | GGCC | 1 cut(s) | 1333 |
| BtsCI | GGATG | 4 cut(s) | 540, 909, 1005, 1230 |
| BtsI | GCAGTG | 1 cut(s) | 633 |
| BtsIMutI | CAGTG | 1 cut(s) | 633 |
| Cac8I | GCNNGC | 3 cut(s) | 882, 1282, 1323 |
| CfoI | GCGC | 1 cut(s) | 1012 |
| Cfr10I | RCCGGY | 1 cut(s) | 804 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 152 |
| Csp6I | GTAC | 4 cut(s) | 539, 740, 1069, 1201 |
| CviAII | CATG | 2 cut(s) | 329, 1145 |
| CviQI | GTAC | 4 cut(s) | 539, 740, 1069, 1201 |
| DpnI | GATC | 2 cut(s) | 457, 764 |
| DpnII | GATC | 2 cut(s) | 455, 762 |
| DraI | TTTAAA | 2 cut(s) | 145, 796 |
| Eam1104I | CTCTTC | 2 cut(s) | 582, 977 |
| EarI | CTCTTC | 2 cut(s) | 582, 977 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco147I | AGGCCT | 1 cut(s) | 1333 |
| Eco32I | GATATC | 1 cut(s) | 400 |
| Eco47I | GGWCC | 2 cut(s) | 4, 152 |
| Eco57I | CTGAAG | 2 cut(s) | 480, 756 |
| Eco81I | CCTNAGG | 1 cut(s) | 1335 |
| EcoRV | GATATC | 1 cut(s) | 400 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| EcoT22I | ATGCAT | 2 cut(s) | 679, 1005 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 2 cut(s) | 332, 1148 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 228, 260 |
| FatI | CATG | 2 cut(s) | 328, 1144 |
| FauNDI | CATATG | 1 cut(s) | 388 |
| FokI | GGATG | 4 cut(s) | 547, 916, 1012, 1237 |
| FspBI | CTAG | 3 cut(s) | 288, 900, 1250 |
| GlaI | GCGC | 1 cut(s) | 1011 |
| GsaI | CCCAGC | 1 cut(s) | 352 |
| HaeIII | GGCC | 1 cut(s) | 1333 |
| HapII | CCGG | 2 cut(s) | 584, 805 |
| HhaI | GCGC | 1 cut(s) | 1012 |
| Hin1II | CATG | 2 cut(s) | 332, 1148 |
| Hin6I | GCGC | 1 cut(s) | 1010 |
| HinP1I | GCGC | 1 cut(s) | 1010 |
| HincII | GTYRAC | 1 cut(s) | 384 |
| HindII | GTYRAC | 1 cut(s) | 384 |
| HindIII | AAGCTT | 1 cut(s) | 446 |
| HinfI | GANTC | 8 cut(s) | 353, 467, 564, 570, 836, 941, 1196, 1292 |
| HpaII | CCGG | 2 cut(s) | 584, 805 |
| HphI | GGTGA | 2 cut(s) | 1351, 1373 |
| Hpy166II | GTNNAC | 2 cut(s) | 384, 1084 |
| Hpy188I | TCNGA | 7 cut(s) | 27, 106, 175, 460, 569, 928, 1022 |
| Hpy188III | TCNNGA | 4 cut(s) | 227, 236, 614, 1037 |
| Hpy8I | GTNNAC | 2 cut(s) | 384, 1084 |
| HpyCH4III | ACNGT | 1 cut(s) | 1081 |
| HpyCH4V | TGCA | 9 cut(s) | 299, 626, 650, 677, 884, 1003, 1031, 1169, 1284 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 422, 674, 871, 994, 1009, 1154 |
| Hsp92II | CATG | 2 cut(s) | 332, 1148 |
| HspAI | GCGC | 1 cut(s) | 1010 |
| Kzo9I | GATC | 2 cut(s) | 455, 762 |
| LmnI | GCTCC | 2 cut(s) | 616, 1145 |
| LweI | GCATC | 6 cut(s) | 286, 563, 686, 990, 1040, 1255 |
| MaeI | CTAG | 3 cut(s) | 288, 900, 1250 |
| MalI | GATC | 2 cut(s) | 457, 764 |
| MbiI | CCGCTC | 1 cut(s) | 997 |
| MboI | GATC | 2 cut(s) | 455, 762 |
| MboII | GAAGA | 8 cut(s) | 599, 991, 994, 1263, 1266, 1347, 1354, 1378 |
| MfeI | CAATTG | 1 cut(s) | 633 |
| MflI | RGATCY | 2 cut(s) | 455, 762 |
| MluCI | AATT | 7 cut(s) | 121, 264, 373, 633, 670, 1122, 1126 |
| MlyI | GAGTC | 5 cut(s) | 573, 845, 950, 1190, 1301 |
| Mph1103I | ATGCAT | 2 cut(s) | 679, 1005 |
| MroXI | GAANNNNTTC | 1 cut(s) | 222 |
| MseI | TTAA | 6 cut(s) | 144, 660, 795, 843, 1125, 1350 |
| MspI | CCGG | 2 cut(s) | 584, 805 |
| MunI | CAATTG | 1 cut(s) | 633 |
| Mva1269I | GAATGC | 1 cut(s) | 865 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 422, 674, 871, 994, 1009, 1154 |
| NdeI | CATATG | 1 cut(s) | 388 |
| NdeII | GATC | 2 cut(s) | 455, 762 |
| NlaIII | CATG | 2 cut(s) | 332, 1148 |
| NlaIV | GGNNCC | 1 cut(s) | 782 |
| NsiI | ATGCAT | 2 cut(s) | 679, 1005 |
| PceI | AGGCCT | 1 cut(s) | 1333 |
| PctI | GAATGC | 1 cut(s) | 865 |
| PdmI | GAANNNNTTC | 1 cut(s) | 222 |
| PfeI | GAWTC | 3 cut(s) | 353, 467, 570 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 951 |
| PleI | GAGTC | 5 cut(s) | 572, 844, 949, 1190, 1300 |
| PpsI | GAGTC | 5 cut(s) | 572, 844, 949, 1190, 1300 |
| PshBI | ATTAAT | 1 cut(s) | 1125 |
| PsiI | TTATAA | 1 cut(s) | 1233 |
| PspFI | CCCAGC | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 1 cut(s) | 782 |
| PspPI | GGNCC | 2 cut(s) | 4, 152 |
| PsuI | RGATCY | 2 cut(s) | 455, 762 |
| RsaI | GTAC | 4 cut(s) | 540, 741, 1070, 1202 |
| RsaNI | GTAC | 4 cut(s) | 539, 740, 1069, 1201 |
| SaqAI | TTAA | 6 cut(s) | 144, 660, 795, 843, 1125, 1350 |
| Sau3AI | GATC | 2 cut(s) | 455, 762 |
| Sau96I | GGNCC | 2 cut(s) | 4, 152 |
| ScaI | AGTACT | 2 cut(s) | 741, 1070 |
| SchI | GAGTC | 5 cut(s) | 573, 845, 950, 1190, 1301 |
| SfaNI | GCATC | 6 cut(s) | 286, 563, 686, 990, 1040, 1255 |
| SinI | GGWCC | 2 cut(s) | 4, 152 |
| SmlI | CTYRAG | 1 cut(s) | 1035 |
| SmoI | CTYRAG | 1 cut(s) | 1035 |
| Sse9I | AATT | 7 cut(s) | 121, 264, 373, 633, 670, 1122, 1126 |
| SseBI | AGGCCT | 1 cut(s) | 1333 |
| SsiI | CCGC | 5 cut(s) | 257, 604, 729, 878, 997 |
| SspI | AATATT | 1 cut(s) | 1217 |
| SspMI | CTAG | 3 cut(s) | 288, 900, 1250 |
| StuI | AGGCCT | 1 cut(s) | 1333 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 1 cut(s) | 1081 |
| TaqI | TCGA | 1 cut(s) | 680 |
| TaqII | GACCGA | 1 cut(s) | 698 |
| TasI | AATT | 7 cut(s) | 121, 264, 373, 633, 670, 1122, 1126 |
| TatI | WGTACW | 2 cut(s) | 739, 1068 |
| TfiI | GAWTC | 3 cut(s) | 353, 467, 570 |
| Tru1I | TTAA | 6 cut(s) | 144, 660, 795, 843, 1125, 1350 |
| Tru9I | TTAA | 6 cut(s) | 144, 660, 795, 843, 1125, 1350 |
| TscAI | CASTG | 1 cut(s) | 633 |
| TspDTI | ATGAA | 8 cut(s) | 44, 192, 459, 608, 920, 929, 992, 1235 |
| TspRI | CASTG | 1 cut(s) | 633 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 951 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 152 |
| VspI | ATTAAT | 1 cut(s) | 1125 |
| XmaJI | CCTAGG | 1 cut(s) | 287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 222 |
| XspI | CTAG | 3 cut(s) | 288, 900, 1250 |
| ZrmI | AGTACT | 2 cut(s) | 741, 1070 |
| Zsp2I | ATGCAT | 2 cut(s) | 679, 1005 |