isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 147 |
| AccB1I | GGYRCC | 2 cut(s) | 50, 587 |
| AccBSI | CCGCTC | 1 cut(s) | 1242 |
| AccI | GTMKAC | 3 cut(s) | 66, 1147, 1158 |
| AccIII | TCCGGA | 1 cut(s) | 97 |
| AciI | CCGC | 4 cut(s) | 174, 407, 1242, 1259 |
| AclWI | GGATC | 1 cut(s) | 994 |
| AcsI | RAATTY | 4 cut(s) | 125, 596, 672, 737 |
| AcyI | GRCGYC | 2 cut(s) | 51, 144 |
| AfaI | GTAC | 3 cut(s) | 113, 650, 780 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1023, 1258 |
| AflIII | ACRYGT | 2 cut(s) | 1008, 1150 |
| AgsI | TTSAA | 8 cut(s) | 131, 353, 398, 629, 772, 854, 883, 1130 |
| AjnI | CCWGG | 3 cut(s) | 104, 310, 1016 |
| AleI | CACNNNNGTG | 1 cut(s) | 644 |
| AluBI | AGCT | 6 cut(s) | 28, 295, 462, 610, 867, 1031 |
| AluI | AGCT | 6 cut(s) | 28, 295, 462, 610, 867, 1031 |
| AlwI | GGATC | 1 cut(s) | 994 |
| Aor13HI | TCCGGA | 1 cut(s) | 97 |
| AoxI | GGCC | 2 cut(s) | 102, 151 |
| ApeKI | GCWGC | 5 cut(s) | 79, 426, 429, 610, 687 |
| ApoI | RAATTY | 4 cut(s) | 125, 596, 672, 737 |
| AspLEI | GCGC | 1 cut(s) | 53 |
| AspS9I | GGNCC | 1 cut(s) | 1197 |
| AsuHPI | GGTGA | 2 cut(s) | 131, 631 |
| AvaII | GGWCC | 1 cut(s) | 1197 |
| BanI | GGYRCC | 2 cut(s) | 50, 587 |
| BbvI | GCAGC | 5 cut(s) | 91, 413, 441, 597, 699 |
| BccI | CCATC | 4 cut(s) | 110, 740, 1160, 1208 |
| BceAI | ACGGC | 1 cut(s) | 59 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 676, 710 |
| BciT130I | CCWGG | 3 cut(s) | 106, 312, 1018 |
| BclI | TGATCA | 1 cut(s) | 22 |
| BfaI | CTAG | 2 cut(s) | 137, 969 |
| BfmI | CTRYAG | 1 cut(s) | 427 |
| BfoI | RGCGCY | 1 cut(s) | 54 |
| BisI | GCNGC | 7 cut(s) | 80, 175, 427, 430, 611, 688, 1243 |
| BlsI | GCNGC | 7 cut(s) | 81, 176, 428, 431, 612, 689, 1244 |
| Bme1390I | CCNGG | 3 cut(s) | 106, 312, 1018 |
| Bme18I | GGWCC | 1 cut(s) | 1197 |
| BmgT120I | GGNCC | 1 cut(s) | 1197 |
| BmiI | GGNNCC | 4 cut(s) | 52, 589, 700, 1198 |
| BmrFI | CCNGG | 3 cut(s) | 106, 312, 1018 |
| BmsI | GCATC | 2 cut(s) | 897, 1084 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1182 |
| BsaHI | GRCGYC | 2 cut(s) | 51, 144 |
| BsaJI | CCNNGG | 4 cut(s) | 46, 105, 887, 1048 |
| BsaWI | WCCGGW | 2 cut(s) | 56, 97 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1023, 1258 |
| Bse1I | ACTGG | 2 cut(s) | 1219, 1228 |
| BseAI | TCCGGA | 1 cut(s) | 97 |
| BseBI | CCWGG | 3 cut(s) | 106, 312, 1018 |
| BseDI | CCNNGG | 4 cut(s) | 46, 105, 887, 1048 |
| BseGI | GGATG | 4 cut(s) | 484, 755, 1075, 1200 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1023, 1258 |
| BseMII | CTCAG | 3 cut(s) | 489, 504, 981 |
| BseNI | ACTGG | 2 cut(s) | 1219, 1228 |
| BseXI | GCAGC | 5 cut(s) | 91, 413, 441, 597, 699 |
| BsgI | GTGCAG | 1 cut(s) | 98 |
| BshFI | GGCC | 2 cut(s) | 104, 153 |
| BshNI | GGYRCC | 2 cut(s) | 50, 587 |
| BsiSI | CCGG | 2 cut(s) | 57, 98 |
| BslFI | GGGAC | 1 cut(s) | 1210 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1023, 1258 |
| BsmFI | GGGAC | 1 cut(s) | 1210 |
| BsnI | GGCC | 2 cut(s) | 104, 153 |
| Bsp13I | TCCGGA | 1 cut(s) | 97 |
| Bsp1407I | TGTACA | 1 cut(s) | 648 |
| Bsp143I | GATC | 3 cut(s) | 22, 155, 986 |
| BspACI | CCGC | 4 cut(s) | 174, 407, 1242, 1259 |
| BspANI | GGCC | 2 cut(s) | 104, 153 |
| BspCNI | CTCAG | 3 cut(s) | 490, 505, 982 |
| BspEI | TCCGGA | 1 cut(s) | 97 |
| BspLI | GGNNCC | 4 cut(s) | 52, 589, 700, 1198 |
| BspMAI | CTGCAG | 1 cut(s) | 431 |
| BspPI | GGATC | 1 cut(s) | 994 |
| BspT107I | GGYRCC | 2 cut(s) | 50, 587 |
| BsrBI | CCGCTC | 1 cut(s) | 1242 |
| BsrGI | TGTACA | 1 cut(s) | 648 |
| BsrI | ACTGG | 2 cut(s) | 1219, 1228 |
| BssECI | CCNNGG | 4 cut(s) | 46, 105, 887, 1048 |
| BssMI | GATC | 3 cut(s) | 22, 155, 986 |
| BssNAI | GTATAC | 1 cut(s) | 1159 |
| BssNI | GRCGYC | 2 cut(s) | 51, 144 |
| BssT1I | CCWWGG | 2 cut(s) | 887, 1048 |
| Bst1107I | GTATAC | 1 cut(s) | 1159 |
| Bst2UI | CCWGG | 3 cut(s) | 106, 312, 1018 |
| Bst4CI | ACNGT | 1 cut(s) | 923 |
| BstACI | GRCGYC | 2 cut(s) | 51, 144 |
| BstAUI | TGTACA | 1 cut(s) | 648 |
| BstC8I | GCNNGC | 2 cut(s) | 84, 1247 |
| BstDEI | CTNAG | 4 cut(s) | 372, 498, 513, 990 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1021 |
| BstF5I | GGATG | 4 cut(s) | 484, 755, 1075, 1200 |
| BstH2I | RGCGCY | 1 cut(s) | 54 |
| BstHHI | GCGC | 1 cut(s) | 53 |
| BstKTI | GATC | 3 cut(s) | 25, 158, 989 |
| BstMBI | GATC | 3 cut(s) | 22, 155, 986 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 34, 801, 953, 1037 |
| BstNI | CCWGG | 3 cut(s) | 106, 312, 1018 |
| BstNSI | RCATGY | 6 cut(s) | 90, 722, 818, 1012, 1122, 1154 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1182 |
| BstSCI | CCNGG | 3 cut(s) | 104, 310, 1016 |
| BstSFI | CTRYAG | 1 cut(s) | 427 |
| BstV1I | GCAGC | 5 cut(s) | 91, 413, 441, 597, 699 |
| BstX2I | RGATCY | 1 cut(s) | 986 |
| BstYI | RGATCY | 1 cut(s) | 986 |
| BstZ17I | GTATAC | 1 cut(s) | 1159 |
| BsuRI | GGCC | 2 cut(s) | 104, 153 |
| BtsCI | GGATG | 4 cut(s) | 484, 755, 1075, 1200 |
| Cac8I | GCNNGC | 2 cut(s) | 84, 1247 |
| CfoI | GCGC | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 1 cut(s) | 1197 |
| Csp6I | GTAC | 3 cut(s) | 112, 649, 779 |
| CviQI | GTAC | 3 cut(s) | 112, 649, 779 |
| DdeI | CTNAG | 4 cut(s) | 372, 498, 513, 990 |
| DinI | GGCGCC | 1 cut(s) | 52 |
| DpnI | GATC | 3 cut(s) | 24, 157, 988 |
| DpnII | GATC | 3 cut(s) | 22, 155, 986 |
| Eco130I | CCWWGG | 2 cut(s) | 887, 1048 |
| Eco32I | GATATC | 2 cut(s) | 895, 933 |
| Eco47I | GGWCC | 1 cut(s) | 1197 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1021 |
| EcoRI | GAATTC | 1 cut(s) | 672 |
| EcoRII | CCWGG | 3 cut(s) | 104, 310, 1016 |
| EcoRV | GATATC | 2 cut(s) | 895, 933 |
| EcoT14I | CCWWGG | 2 cut(s) | 887, 1048 |
| EgeI | GGCGCC | 1 cut(s) | 52 |
| EheI | GGCGCC | 1 cut(s) | 52 |
| ErhI | CCWWGG | 2 cut(s) | 887, 1048 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 515, 547 |
| FaqI | GGGAC | 1 cut(s) | 1210 |
| FbaI | TGATCA | 1 cut(s) | 22 |
| FblI | GTMKAC | 3 cut(s) | 66, 1147, 1158 |
| Fnu4HI | GCNGC | 7 cut(s) | 80, 175, 427, 430, 611, 688, 1243 |
| FokI | GGATG | 4 cut(s) | 491, 762, 1062, 1187 |
| Fsp4HI | GCNGC | 7 cut(s) | 80, 175, 427, 430, 611, 688, 1243 |
| FspBI | CTAG | 2 cut(s) | 137, 969 |
| GlaI | GCGC | 1 cut(s) | 52 |
| GluI | GCNGC | 7 cut(s) | 80, 175, 427, 430, 611, 688, 1243 |
| HaeII | RGCGCY | 1 cut(s) | 54 |
| HaeIII | GGCC | 2 cut(s) | 104, 153 |
| HapII | CCGG | 2 cut(s) | 57, 98 |
| HhaI | GCGC | 1 cut(s) | 53 |
| Hin1I | GRCGYC | 2 cut(s) | 51, 144 |
| Hin6I | GCGC | 1 cut(s) | 51 |
| HinP1I | GCGC | 1 cut(s) | 51 |
| HincII | GTYRAC | 1 cut(s) | 67 |
| HindII | GTYRAC | 1 cut(s) | 67 |
| HinfI | GANTC | 4 cut(s) | 92, 764, 998, 1183 |
| HpaII | CCGG | 2 cut(s) | 57, 98 |
| HphI | GGTGA | 2 cut(s) | 131, 631 |
| Hpy166II | GTNNAC | 6 cut(s) | 67, 649, 651, 781, 1148, 1159 |
| Hpy188I | TCNGA | 5 cut(s) | 514, 595, 698, 736, 991 |
| Hpy188III | TCNNGA | 8 cut(s) | 98, 192, 537, 602, 841, 854, 898, 1079 |
| Hpy8I | GTNNAC | 6 cut(s) | 67, 649, 651, 781, 1148, 1159 |
| Hpy99I | CGWCG | 2 cut(s) | 149, 1166 |
| HpyAV | CCTTC | 4 cut(s) | 416, 560, 1124, 1212 |
| HpyCH4III | ACNGT | 1 cut(s) | 923 |
| HpyCH4IV | ACGT | 3 cut(s) | 144, 777, 1161 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 34, 801, 953, 1037 |
| HpyF3I | CTNAG | 4 cut(s) | 372, 498, 513, 990 |
| HpySE526I | ACGT | 3 cut(s) | 144, 777, 1161 |
| Hsp92I | GRCGYC | 2 cut(s) | 51, 144 |
| HspAI | GCGC | 1 cut(s) | 51 |
| KasI | GGCGCC | 1 cut(s) | 50 |
| Kpn2I | TCCGGA | 1 cut(s) | 97 |
| Ksp22I | TGATCA | 1 cut(s) | 22 |
| Kzo9I | GATC | 3 cut(s) | 22, 155, 986 |
| LmnI | GCTCC | 2 cut(s) | 1239, 1254 |
| Lsp1109I | GCAGC | 5 cut(s) | 91, 413, 441, 597, 699 |
| LweI | GCATC | 2 cut(s) | 897, 1084 |
| MaeI | CTAG | 2 cut(s) | 137, 969 |
| MaeII | ACGT | 3 cut(s) | 144, 777, 1161 |
| MaeIII | GTNAC | 3 cut(s) | 89, 338, 1043 |
| MalI | GATC | 3 cut(s) | 24, 157, 988 |
| MbiI | CCGCTC | 1 cut(s) | 1242 |
| MboI | GATC | 3 cut(s) | 22, 155, 986 |
| MboII | GAAGA | 3 cut(s) | 424, 467, 494 |
| MfeI | CAATTG | 1 cut(s) | 624 |
| MflI | RGATCY | 1 cut(s) | 986 |
| Mly113I | GGCGCC | 1 cut(s) | 51 |
| MlyI | GAGTC | 2 cut(s) | 86, 1192 |
| MnlI | CCTC | 9 cut(s) | 56, 80, 94, 330, 493, 508, 601, 850, 985 |
| MroI | TCCGGA | 1 cut(s) | 97 |
| MseI | TTAA | 2 cut(s) | 1005, 1137 |
| MslI | CAYNNNNRTG | 2 cut(s) | 585, 644 |
| MspI | CCGG | 2 cut(s) | 57, 98 |
| MspR9I | CCNGG | 3 cut(s) | 106, 312, 1018 |
| MunI | CAATTG | 1 cut(s) | 624 |
| MvaI | CCWGG | 3 cut(s) | 106, 312, 1018 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 34, 801, 953, 1037 |
| NarI | GGCGCC | 1 cut(s) | 51 |
| NdeII | GATC | 3 cut(s) | 22, 155, 986 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 589, 700, 1198 |
| NmeAIII | GCCGAG | 1 cut(s) | 27 |
| NmuCI | GTSAC | 2 cut(s) | 89, 338 |
| NspI | RCATGY | 6 cut(s) | 90, 722, 818, 1012, 1122, 1154 |
| OliI | CACNNNNGTG | 1 cut(s) | 644 |
| PciI | ACATGT | 2 cut(s) | 1008, 1150 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 72 |
| PfeI | GAWTC | 2 cut(s) | 764, 998 |
| PkrI | GCNGC | 7 cut(s) | 81, 176, 428, 431, 612, 689, 1244 |
| PleI | GAGTC | 2 cut(s) | 86, 1191 |
| PluTI | GGCGCC | 1 cut(s) | 54 |
| PpsI | GAGTC | 2 cut(s) | 86, 1191 |
| PscI | ACATGT | 2 cut(s) | 1008, 1150 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1182 |
| Psp6I | CCWGG | 3 cut(s) | 104, 310, 1016 |
| PspGI | CCWGG | 3 cut(s) | 104, 310, 1016 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 589, 700, 1198 |
| PspPI | GGNCC | 1 cut(s) | 1197 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 221, 253 |
| PstI | CTGCAG | 1 cut(s) | 431 |
| PsuI | RGATCY | 1 cut(s) | 986 |
| RsaI | GTAC | 3 cut(s) | 113, 650, 780 |
| RsaNI | GTAC | 3 cut(s) | 112, 649, 779 |
| RseI | CAYNNNNRTG | 2 cut(s) | 585, 644 |
| SalI | GTCGAC | 1 cut(s) | 65 |
| SaqAI | TTAA | 2 cut(s) | 1005, 1137 |
| SatI | GCNGC | 7 cut(s) | 80, 175, 427, 430, 611, 688, 1243 |
| Sau3AI | GATC | 3 cut(s) | 22, 155, 986 |
| Sau96I | GGNCC | 1 cut(s) | 1197 |
| SchI | GAGTC | 2 cut(s) | 86, 1192 |
| ScrFI | CCNGG | 3 cut(s) | 106, 312, 1018 |
| SfaNI | GCATC | 2 cut(s) | 897, 1084 |
| SfcI | CTRYAG | 1 cut(s) | 427 |
| SfoI | GGCGCC | 1 cut(s) | 52 |
| SinI | GGWCC | 1 cut(s) | 1197 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 585, 644 |
| SsiI | CCGC | 4 cut(s) | 174, 407, 1242, 1259 |
| SspDI | GGCGCC | 1 cut(s) | 50 |
| SspMI | CTAG | 2 cut(s) | 137, 969 |
| StyD4I | CCNGG | 3 cut(s) | 104, 310, 1016 |
| StyI | CCWWGG | 2 cut(s) | 887, 1048 |
| TaaI | ACNGT | 1 cut(s) | 923 |
| TaiI | ACGT | 3 cut(s) | 147, 780, 1164 |
| TaqI | TCGA | 6 cut(s) | 66, 246, 521, 601, 820, 1164 |
| TatI | WGTACW | 1 cut(s) | 648 |
| TauI | GCSGC | 2 cut(s) | 177, 1245 |
| TfiI | GAWTC | 2 cut(s) | 764, 998 |
| Tru1I | TTAA | 2 cut(s) | 1005, 1137 |
| Tru9I | TTAA | 2 cut(s) | 1005, 1137 |
| TseFI | GTSAC | 2 cut(s) | 89, 338 |
| TseI | GCWGC | 5 cut(s) | 79, 426, 429, 610, 687 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 338 |
| TspDTI | ATGAA | 9 cut(s) | 138, 193, 206, 242, 438, 495, 569, 665, 1085 |
| VpaK11BI | GGWCC | 1 cut(s) | 1197 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1021 |
| XapI | RAATTY | 4 cut(s) | 125, 596, 672, 737 |
| XceI | RCATGY | 6 cut(s) | 90, 722, 818, 1012, 1122, 1154 |
| XmiI | GTMKAC | 3 cut(s) | 66, 1147, 1158 |
| XspI | CTAG | 2 cut(s) | 137, 969 |
| ZraI | GACGTC | 1 cut(s) | 145 |