Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| KH_KRR1_1st | PF17903 | 50 - 85 | 4.3e-06 | Krr1 KH1 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 410, 502 |
| AcsI | RAATTY | 1 cut(s) | 391 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AgsI | TTSAA | 2 cut(s) | 71, 211 |
| AluBI | AGCT | 3 cut(s) | 37, 232, 442 |
| AluI | AGCT | 3 cut(s) | 37, 232, 442 |
| Alw26I | GTCTC | 2 cut(s) | 82, 175 |
| AlwI | GGATC | 2 cut(s) | 410, 502 |
| Ama87I | CYCGRG | 1 cut(s) | 38 |
| ApeKI | GCWGC | 4 cut(s) | 34, 229, 269, 447 |
| ApoI | RAATTY | 1 cut(s) | 391 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 394 |
| AspS9I | GGNCC | 1 cut(s) | 55 |
| AsuC2I | CCSGG | 1 cut(s) | 473 |
| AsuHPI | GGTGA | 1 cut(s) | 445 |
| AsuII | TTCGAA | 1 cut(s) | 356 |
| AvaI | CYCGRG | 1 cut(s) | 38 |
| AvaII | GGWCC | 1 cut(s) | 55 |
| BbsI | GAAGAC | 2 cut(s) | 204, 483 |
| BbvI | GCAGC | 4 cut(s) | 46, 241, 256, 459 |
| BccI | CCATC | 1 cut(s) | 46 |
| BclI | TGATCA | 1 cut(s) | 109 |
| BcnI | CCSGG | 1 cut(s) | 473 |
| BcoDI | GTCTC | 2 cut(s) | 82, 175 |
| BfaI | CTAG | 2 cut(s) | 342, 422 |
| BfmI | CTRYAG | 1 cut(s) | 32 |
| BisI | GCNGC | 4 cut(s) | 35, 230, 270, 448 |
| BlsI | GCNGC | 4 cut(s) | 36, 231, 271, 449 |
| Bme1390I | CCNGG | 1 cut(s) | 473 |
| Bme18I | GGWCC | 1 cut(s) | 55 |
| BmeT110I | CYCGRG | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 1 cut(s) | 55 |
| BmrFI | CCNGG | 1 cut(s) | 473 |
| BpiI | GAAGAC | 2 cut(s) | 204, 483 |
| Bpu14I | TTCGAA | 1 cut(s) | 356 |
| BpuEI | CTTGAG | 1 cut(s) | 383 |
| BpuMI | CCSGG | 1 cut(s) | 473 |
| Bsa29I | ATCGAT | 1 cut(s) | 100 |
| BsaBI | GATNNNNATC | 1 cut(s) | 333 |
| BsaI | GGTCTC | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 1 cut(s) | 481 |
| Bse1I | ACTGG | 1 cut(s) | 523 |
| Bse8I | GATNNNNATC | 1 cut(s) | 333 |
| BseCI | ATCGAT | 1 cut(s) | 100 |
| BseDI | CCNNGG | 1 cut(s) | 481 |
| BseGI | GGATG | 1 cut(s) | 373 |
| BseJI | GATNNNNATC | 1 cut(s) | 333 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 1 cut(s) | 523 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseXI | GCAGC | 4 cut(s) | 46, 241, 256, 459 |
| Bsh1285I | CGRYCG | 1 cut(s) | 100 |
| BshVI | ATCGAT | 1 cut(s) | 100 |
| BsiEI | CGRYCG | 1 cut(s) | 100 |
| BsiHKCI | CYCGRG | 1 cut(s) | 38 |
| BsiSI | CCGG | 1 cut(s) | 473 |
| BsmAI | GTCTC | 2 cut(s) | 82, 175 |
| BsmBI | CGTCTC | 1 cut(s) | 82 |
| Bso31I | GGTCTC | 1 cut(s) | 175 |
| BsoBI | CYCGRG | 1 cut(s) | 38 |
| Bsp119I | TTCGAA | 1 cut(s) | 356 |
| Bsp143I | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspDI | ATCGAT | 1 cut(s) | 100 |
| BspMAI | CTGCAG | 1 cut(s) | 36 |
| BspPI | GGATC | 2 cut(s) | 410, 502 |
| BspT104I | TTCGAA | 1 cut(s) | 356 |
| BspTNI | GGTCTC | 1 cut(s) | 175 |
| BsrI | ACTGG | 1 cut(s) | 523 |
| BssECI | CCNNGG | 1 cut(s) | 481 |
| BssMI | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| Bst4CI | ACNGT | 2 cut(s) | 277, 292 |
| Bst6I | CTCTTC | 1 cut(s) | 506 |
| BstBI | TTCGAA | 1 cut(s) | 356 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstDSI | CCRYGG | 1 cut(s) | 481 |
| BstF5I | GGATG | 1 cut(s) | 373 |
| BstKTI | GATC | 5 cut(s) | 100, 112, 337, 405, 497 |
| BstMAI | GTCTC | 2 cut(s) | 82, 175 |
| BstMBI | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| BstMCI | CGRYCG | 1 cut(s) | 100 |
| BstNSI | RCATGY | 1 cut(s) | 287 |
| BstSCI | CCNGG | 1 cut(s) | 471 |
| BstSFI | CTRYAG | 1 cut(s) | 32 |
| BstV1I | GCAGC | 4 cut(s) | 46, 241, 256, 459 |
| BstV2I | GAAGAC | 2 cut(s) | 204, 483 |
| BstX2I | RGATCY | 1 cut(s) | 402 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 258 |
| BstYI | RGATCY | 1 cut(s) | 402 |
| Bsu15I | ATCGAT | 1 cut(s) | 100 |
| BsuTUI | ATCGAT | 1 cut(s) | 100 |
| BtgI | CCRYGG | 1 cut(s) | 481 |
| BtsCI | GGATG | 1 cut(s) | 373 |
| Cfr13I | GGNCC | 1 cut(s) | 55 |
| ClaI | ATCGAT | 1 cut(s) | 100 |
| CviAII | CATG | 3 cut(s) | 284, 338, 379 |
| CviJI | RGCY | 7 cut(s) | 37, 47, 188, 232, 414, 442, 450 |
| CviKI_1 | RGCY | 7 cut(s) | 37, 47, 188, 232, 414, 442, 450 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 5 cut(s) | 99, 111, 336, 404, 496 |
| DpnII | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| Eam1104I | CTCTTC | 1 cut(s) | 506 |
| EarI | CTCTTC | 1 cut(s) | 506 |
| Eco31I | GGTCTC | 1 cut(s) | 175 |
| Eco47I | GGWCC | 1 cut(s) | 55 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| Eco88I | CYCGRG | 1 cut(s) | 38 |
| Esp3I | CGTCTC | 1 cut(s) | 82 |
| FaeI | CATG | 3 cut(s) | 287, 341, 382 |
| FaiI | YATR | 7 cut(s) | 114, 144, 164, 203, 285, 339, 380 |
| FatI | CATG | 3 cut(s) | 283, 337, 378 |
| FbaI | TGATCA | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 4 cut(s) | 35, 230, 270, 448 |
| FokI | GGATG | 1 cut(s) | 380 |
| Fsp4HI | GCNGC | 4 cut(s) | 35, 230, 270, 448 |
| FspBI | CTAG | 2 cut(s) | 342, 422 |
| GluI | GCNGC | 4 cut(s) | 35, 230, 270, 448 |
| HapII | CCGG | 1 cut(s) | 473 |
| Hin1II | CATG | 3 cut(s) | 287, 341, 382 |
| HinfI | GANTC | 5 cut(s) | 102, 353, 436, 459, 514 |
| HpaII | CCGG | 1 cut(s) | 473 |
| HphI | GGTGA | 1 cut(s) | 445 |
| Hpy188I | TCNGA | 4 cut(s) | 7, 51, 124, 402 |
| Hpy188III | TCNNGA | 3 cut(s) | 240, 406, 518 |
| HpyAV | CCTTC | 1 cut(s) | 160 |
| HpyCH4III | ACNGT | 2 cut(s) | 277, 292 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 229, 447 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| Hsp92II | CATG | 3 cut(s) | 287, 341, 382 |
| Ksp22I | TGATCA | 1 cut(s) | 109 |
| Kzo9I | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| LpnPI | CCDG | 3 cut(s) | 264, 330, 486 |
| Lsp1109I | GCAGC | 4 cut(s) | 46, 241, 256, 459 |
| MaeI | CTAG | 2 cut(s) | 342, 422 |
| MalI | GATC | 5 cut(s) | 99, 111, 336, 404, 496 |
| MboI | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| MboII | GAAGA | 6 cut(s) | 20, 203, 209, 344, 488, 523 |
| MfeI | CAATTG | 1 cut(s) | 216 |
| MflI | RGATCY | 1 cut(s) | 402 |
| MluCI | AATT | 7 cut(s) | 66, 115, 204, 216, 264, 384, 391 |
| MlyI | GAGTC | 2 cut(s) | 453, 523 |
| MnlI | CCTC | 7 cut(s) | 34, 37, 148, 358, 461, 479, 485 |
| MroXI | GAANNNNTTC | 1 cut(s) | 394 |
| MspI | CCGG | 1 cut(s) | 473 |
| MspR9I | CCNGG | 1 cut(s) | 473 |
| MunI | CAATTG | 1 cut(s) | 216 |
| NciI | CCSGG | 1 cut(s) | 473 |
| NdeII | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| NlaIII | CATG | 3 cut(s) | 287, 341, 382 |
| NspI | RCATGY | 1 cut(s) | 287 |
| NspV | TTCGAA | 1 cut(s) | 356 |
| PaeR7I | CTCGAG | 1 cut(s) | 38 |
| PdmI | GAANNNNTTC | 1 cut(s) | 394 |
| PfeI | GAWTC | 3 cut(s) | 102, 353, 436 |
| PfoI | TCCNGGA | 1 cut(s) | 471 |
| PkrI | GCNGC | 4 cut(s) | 36, 231, 271, 449 |
| Ple19I | CGATCG | 1 cut(s) | 100 |
| PleI | GAGTC | 2 cut(s) | 453, 522 |
| PpsI | GAGTC | 2 cut(s) | 453, 522 |
| PspPI | GGNCC | 1 cut(s) | 55 |
| PspXI | VCTCGAGB | 1 cut(s) | 38 |
| PstI | CTGCAG | 1 cut(s) | 36 |
| PsuI | RGATCY | 1 cut(s) | 402 |
| PvuI | CGATCG | 1 cut(s) | 100 |
| SatI | GCNGC | 4 cut(s) | 35, 230, 270, 448 |
| Sau3AI | GATC | 5 cut(s) | 97, 109, 334, 402, 494 |
| Sau96I | GGNCC | 1 cut(s) | 55 |
| SchI | GAGTC | 2 cut(s) | 453, 523 |
| ScrFI | CCNGG | 1 cut(s) | 473 |
| SetI | ASST | 7 cut(s) | 39, 139, 171, 234, 363, 444, 471 |
| SfcI | CTRYAG | 1 cut(s) | 32 |
| Sfr274I | CTCGAG | 1 cut(s) | 38 |
| SfuI | TTCGAA | 1 cut(s) | 356 |
| SinI | GGWCC | 1 cut(s) | 55 |
| SlaI | CTCGAG | 1 cut(s) | 38 |
| SmlI | CTYRAG | 2 cut(s) | 38, 362 |
| SmoI | CTYRAG | 2 cut(s) | 38, 362 |
| Sse9I | AATT | 7 cut(s) | 66, 115, 204, 216, 264, 384, 391 |
| SspMI | CTAG | 2 cut(s) | 342, 422 |
| StyD4I | CCNGG | 1 cut(s) | 471 |
| TaaI | ACNGT | 2 cut(s) | 277, 292 |
| TaqI | TCGA | 5 cut(s) | 39, 100, 239, 356, 462 |
| TasI | AATT | 7 cut(s) | 66, 115, 204, 216, 264, 384, 391 |
| TfiI | GAWTC | 3 cut(s) | 102, 353, 436 |
| TseI | GCWGC | 4 cut(s) | 34, 229, 269, 447 |
| TspDTI | ATGAA | 4 cut(s) | 78, 179, 210, 345 |
| TspGWI | ACGGA | 1 cut(s) | 498 |
| VpaK11BI | GGWCC | 1 cut(s) | 55 |
| XapI | RAATTY | 1 cut(s) | 391 |
| XceI | RCATGY | 1 cut(s) | 287 |
| XhoI | CTCGAG | 1 cut(s) | 38 |
| XmnI | GAANNNNTTC | 1 cut(s) | 394 |
| XspI | CTAG | 2 cut(s) | 342, 422 |