isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 853 |
| AccB1I | GGYRCC | 1 cut(s) | 212 |
| AciI | CCGC | 3 cut(s) | 210, 429, 810 |
| AclWI | GGATC | 1 cut(s) | 487 |
| AcoI | YGGCCR | 1 cut(s) | 811 |
| AcsI | RAATTY | 2 cut(s) | 419, 859 |
| AcuI | CTGAAG | 1 cut(s) | 378 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 343 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AluBI | AGCT | 8 cut(s) | 17, 75, 139, 284, 306, 454, 584, 799 |
| AluI | AGCT | 8 cut(s) | 17, 75, 139, 284, 306, 454, 584, 799 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 524 |
| Alw26I | GTCTC | 1 cut(s) | 441 |
| Alw44I | GTGCAC | 1 cut(s) | 25 |
| AlwI | GGATC | 1 cut(s) | 487 |
| Ama87I | CYCGRG | 2 cut(s) | 437, 746 |
| AoxI | GGCC | 3 cut(s) | 740, 752, 811 |
| ApaLI | GTGCAC | 1 cut(s) | 25 |
| ApeKI | GCWGC | 5 cut(s) | 273, 306, 558, 572, 584 |
| ApoI | RAATTY | 2 cut(s) | 419, 859 |
| AseI | ATTAAT | 1 cut(s) | 60 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 514 |
| AspA2I | CCTAGG | 1 cut(s) | 755 |
| AspLEI | GCGC | 1 cut(s) | 164 |
| AspS9I | GGNCC | 1 cut(s) | 502 |
| AsuC2I | CCSGG | 2 cut(s) | 747, 748 |
| AvaI | CYCGRG | 2 cut(s) | 437, 746 |
| AvaII | GGWCC | 1 cut(s) | 502 |
| AvrII | CCTAGG | 1 cut(s) | 755 |
| BaeGI | GKGCMC | 1 cut(s) | 29 |
| BanI | GGYRCC | 1 cut(s) | 212 |
| BbsI | GAAGAC | 1 cut(s) | 851 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 524 |
| BbvI | GCAGC | 5 cut(s) | 285, 293, 545, 559, 571 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BcnI | CCSGG | 2 cut(s) | 747, 748 |
| BcoDI | GTCTC | 1 cut(s) | 441 |
| BfaI | CTAG | 4 cut(s) | 393, 756, 777, 849 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 819 |
| BisI | GCNGC | 6 cut(s) | 274, 307, 559, 573, 585, 811 |
| BlnI | CCTAGG | 1 cut(s) | 755 |
| BlsI | GCNGC | 6 cut(s) | 275, 308, 560, 574, 586, 812 |
| Bme1390I | CCNGG | 3 cut(s) | 156, 747, 748 |
| Bme18I | GGWCC | 1 cut(s) | 502 |
| BmeT110I | CYCGRG | 2 cut(s) | 437, 746 |
| BmgT120I | GGNCC | 1 cut(s) | 502 |
| BmiI | GGNNCC | 2 cut(s) | 214, 433 |
| BmrFI | CCNGG | 3 cut(s) | 156, 747, 748 |
| BmsI | GCATC | 2 cut(s) | 149, 189 |
| BpiI | GAAGAC | 1 cut(s) | 851 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 64, 96, 438, 470 |
| Bpu10I | CCTNAGC | 1 cut(s) | 13 |
| BpuEI | CTTGAG | 1 cut(s) | 746 |
| BpuMI | CCSGG | 2 cut(s) | 747, 748 |
| BsaJI | CCNNGG | 4 cut(s) | 505, 562, 746, 755 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 343 |
| Bse3DI | GCAATG | 1 cut(s) | 187 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseDI | CCNNGG | 4 cut(s) | 505, 562, 746, 755 |
| BseGI | GGATG | 4 cut(s) | 10, 164, 328, 601 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 343 |
| BseMI | GCAATG | 1 cut(s) | 187 |
| BseMII | CTCAG | 2 cut(s) | 333, 469 |
| BseRI | GAGGAG | 1 cut(s) | 795 |
| BseSI | GKGCMC | 1 cut(s) | 29 |
| BseX3I | CGGCCG | 1 cut(s) | 811 |
| BseXI | GCAGC | 5 cut(s) | 285, 293, 545, 559, 571 |
| Bsh1285I | CGRYCG | 1 cut(s) | 814 |
| BshFI | GGCC | 3 cut(s) | 742, 754, 813 |
| BshNI | GGYRCC | 1 cut(s) | 212 |
| BsiEI | CGRYCG | 1 cut(s) | 814 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 524 |
| BsiHKCI | CYCGRG | 2 cut(s) | 437, 746 |
| BsiSI | CCGG | 1 cut(s) | 747 |
| BslFI | GGGAC | 1 cut(s) | 843 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 343 |
| BsmAI | GTCTC | 1 cut(s) | 441 |
| BsmFI | GGGAC | 1 cut(s) | 843 |
| BsnI | GGCC | 3 cut(s) | 742, 754, 813 |
| BsoBI | CYCGRG | 2 cut(s) | 437, 746 |
| Bsp1286I | GDGCHC | 2 cut(s) | 29, 524 |
| Bsp143I | GATC | 1 cut(s) | 479 |
| BspACI | CCGC | 3 cut(s) | 210, 429, 810 |
| BspANI | GGCC | 3 cut(s) | 742, 754, 813 |
| BspCNI | CTCAG | 2 cut(s) | 334, 468 |
| BspLI | GGNNCC | 2 cut(s) | 214, 433 |
| BspPI | GGATC | 1 cut(s) | 487 |
| BspT107I | GGYRCC | 1 cut(s) | 212 |
| BsrDI | GCAATG | 1 cut(s) | 187 |
| BssECI | CCNNGG | 4 cut(s) | 505, 562, 746, 755 |
| BssMI | GATC | 1 cut(s) | 479 |
| BssT1I | CCWWGG | 2 cut(s) | 505, 755 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 2 cut(s) | 108, 566 |
| BstDEI | CTNAG | 3 cut(s) | 13, 342, 455 |
| BstDSI | CCRYGG | 1 cut(s) | 562 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 341 |
| BstF5I | GGATG | 4 cut(s) | 10, 164, 328, 601 |
| BstHHI | GCGC | 1 cut(s) | 164 |
| BstKTI | GATC | 1 cut(s) | 482 |
| BstMAI | GTCTC | 1 cut(s) | 441 |
| BstMBI | GATC | 1 cut(s) | 479 |
| BstMCI | CGRYCG | 1 cut(s) | 814 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 14, 555, 581, 819 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstSCI | CCNGG | 3 cut(s) | 154, 745, 746 |
| BstSLI | GKGCMC | 1 cut(s) | 29 |
| BstV1I | GCAGC | 5 cut(s) | 285, 293, 545, 559, 571 |
| BstV2I | GAAGAC | 1 cut(s) | 851 |
| BstZI | CGGCCG | 1 cut(s) | 811 |
| BsuRI | GGCC | 3 cut(s) | 742, 754, 813 |
| BtgI | CCRYGG | 1 cut(s) | 562 |
| BtsCI | GGATG | 4 cut(s) | 10, 164, 328, 601 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| CfoI | GCGC | 1 cut(s) | 164 |
| Cfr13I | GGNCC | 1 cut(s) | 502 |
| Cfr9I | CCCGGG | 1 cut(s) | 746 |
| CviAII | CATG | 2 cut(s) | 49, 525 |
| DdeI | CTNAG | 3 cut(s) | 13, 342, 455 |
| DpnI | GATC | 1 cut(s) | 481 |
| DpnII | GATC | 1 cut(s) | 479 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 853 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 853 |
| EaeI | YGGCCR | 1 cut(s) | 811 |
| EagI | CGGCCG | 1 cut(s) | 811 |
| EclXI | CGGCCG | 1 cut(s) | 811 |
| Eco130I | CCWWGG | 2 cut(s) | 505, 755 |
| Eco147I | AGGCCT | 2 cut(s) | 742, 754 |
| Eco47I | GGWCC | 1 cut(s) | 502 |
| Eco52I | CGGCCG | 1 cut(s) | 811 |
| Eco57I | CTGAAG | 1 cut(s) | 378 |
| Eco88I | CYCGRG | 2 cut(s) | 437, 746 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 341 |
| EcoRI | GAATTC | 1 cut(s) | 859 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| EcoT14I | CCWWGG | 2 cut(s) | 505, 755 |
| ErhI | CCWWGG | 2 cut(s) | 505, 755 |
| FaeI | CATG | 2 cut(s) | 52, 528 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 359, 391 |
| FaqI | GGGAC | 1 cut(s) | 843 |
| FatI | CATG | 2 cut(s) | 48, 524 |
| Fnu4HI | GCNGC | 6 cut(s) | 274, 307, 559, 573, 585, 811 |
| FokI | GGATG | 4 cut(s) | 17, 171, 335, 608 |
| Fsp4HI | GCNGC | 6 cut(s) | 274, 307, 559, 573, 585, 811 |
| FspBI | CTAG | 4 cut(s) | 393, 756, 777, 849 |
| GlaI | GCGC | 1 cut(s) | 163 |
| GluI | GCNGC | 6 cut(s) | 274, 307, 559, 573, 585, 811 |
| HaeIII | GGCC | 3 cut(s) | 742, 754, 813 |
| HapII | CCGG | 1 cut(s) | 747 |
| HhaI | GCGC | 1 cut(s) | 164 |
| Hin1II | CATG | 2 cut(s) | 52, 528 |
| Hin6I | GCGC | 1 cut(s) | 162 |
| HinP1I | GCGC | 1 cut(s) | 162 |
| HindIII | AAGCTT | 1 cut(s) | 282 |
| HinfI | GANTC | 1 cut(s) | 698 |
| HpaII | CCGG | 1 cut(s) | 747 |
| Hpy166II | GTNNAC | 3 cut(s) | 27, 104, 502 |
| Hpy188I | TCNGA | 2 cut(s) | 458, 697 |
| Hpy188III | TCNNGA | 5 cut(s) | 36, 196, 446, 763, 777 |
| Hpy8I | GTNNAC | 3 cut(s) | 27, 104, 502 |
| HpyAV | CCTTC | 2 cut(s) | 185, 525 |
| HpyCH4III | ACNGT | 2 cut(s) | 108, 566 |
| HpyCH4V | TGCA | 5 cut(s) | 27, 273, 575, 704, 734 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 14, 555, 581, 819 |
| HpyF3I | CTNAG | 3 cut(s) | 13, 342, 455 |
| Hsp92II | CATG | 2 cut(s) | 52, 528 |
| HspAI | GCGC | 1 cut(s) | 162 |
| Kzo9I | GATC | 1 cut(s) | 479 |
| LpnPI | CCDG | 5 cut(s) | 21, 141, 168, 297, 760 |
| Lsp1109I | GCAGC | 5 cut(s) | 285, 293, 545, 559, 571 |
| LweI | GCATC | 2 cut(s) | 149, 189 |
| MaeI | CTAG | 4 cut(s) | 393, 756, 777, 849 |
| MaeIII | GTNAC | 1 cut(s) | 395 |
| MalI | GATC | 1 cut(s) | 481 |
| MboI | GATC | 1 cut(s) | 479 |
| MboII | GAAGA | 6 cut(s) | 268, 311, 338, 684, 855, 856 |
| MfeI | CAATTG | 1 cut(s) | 123 |
| MhlI | GDGCHC | 2 cut(s) | 29, 524 |
| MluCI | AATT | 6 cut(s) | 123, 267, 419, 576, 660, 859 |
| MmeI | TCCRAC | 2 cut(s) | 210, 457 |
| MnlI | CCTC | 8 cut(s) | 337, 347, 598, 735, 744, 753, 759, 773 |
| MroXI | GAANNNNTTC | 1 cut(s) | 514 |
| MseI | TTAA | 3 cut(s) | 21, 60, 543 |
| MspI | CCGG | 1 cut(s) | 747 |
| MspR9I | CCNGG | 3 cut(s) | 156, 747, 748 |
| MunI | CAATTG | 1 cut(s) | 123 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 14, 555, 581, 819 |
| NciI | CCSGG | 2 cut(s) | 747, 748 |
| NdeII | GATC | 1 cut(s) | 479 |
| NlaIII | CATG | 2 cut(s) | 52, 528 |
| NlaIV | GGNNCC | 2 cut(s) | 214, 433 |
| PceI | AGGCCT | 2 cut(s) | 742, 754 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 811 |
| PdmI | GAANNNNTTC | 1 cut(s) | 514 |
| PfeI | GAWTC | 1 cut(s) | 698 |
| PfoI | TCCNGGA | 1 cut(s) | 154 |
| PkrI | GCNGC | 6 cut(s) | 275, 308, 560, 574, 586, 812 |
| PshBI | ATTAAT | 1 cut(s) | 60 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 2 cut(s) | 214, 433 |
| PspPI | GGNCC | 1 cut(s) | 502 |
| SaqAI | TTAA | 3 cut(s) | 21, 60, 543 |
| SatI | GCNGC | 6 cut(s) | 274, 307, 559, 573, 585, 811 |
| Sau3AI | GATC | 1 cut(s) | 479 |
| Sau96I | GGNCC | 1 cut(s) | 502 |
| ScrFI | CCNGG | 3 cut(s) | 156, 747, 748 |
| SduI | GDGCHC | 2 cut(s) | 29, 524 |
| SfaNI | GCATC | 2 cut(s) | 149, 189 |
| SinI | GGWCC | 1 cut(s) | 502 |
| SmaI | CCCGGG | 1 cut(s) | 748 |
| SmlI | CTYRAG | 1 cut(s) | 761 |
| SmoI | CTYRAG | 1 cut(s) | 761 |
| Sse9I | AATT | 6 cut(s) | 123, 267, 419, 576, 660, 859 |
| SseBI | AGGCCT | 2 cut(s) | 742, 754 |
| SsiI | CCGC | 3 cut(s) | 210, 429, 810 |
| SspMI | CTAG | 4 cut(s) | 393, 756, 777, 849 |
| StuI | AGGCCT | 2 cut(s) | 742, 754 |
| StyD4I | CCNGG | 3 cut(s) | 154, 745, 746 |
| StyI | CCWWGG | 2 cut(s) | 505, 755 |
| TaaI | ACNGT | 2 cut(s) | 108, 566 |
| TaqI | TCGA | 2 cut(s) | 445, 857 |
| TasI | AATT | 6 cut(s) | 123, 267, 419, 576, 660, 859 |
| TauI | GCSGC | 1 cut(s) | 813 |
| TfiI | GAWTC | 1 cut(s) | 698 |
| Tru1I | TTAA | 3 cut(s) | 21, 60, 543 |
| Tru9I | TTAA | 3 cut(s) | 21, 60, 543 |
| TscAI | CASTG | 1 cut(s) | 346 |
| TseI | GCWGC | 5 cut(s) | 273, 306, 558, 572, 584 |
| TspDTI | ATGAA | 5 cut(s) | 37, 131, 282, 339, 706 |
| TspMI | CCCGGG | 1 cut(s) | 746 |
| TspRI | CASTG | 1 cut(s) | 346 |
| VneI | GTGCAC | 1 cut(s) | 25 |
| VpaK11BI | GGWCC | 1 cut(s) | 502 |
| VspI | ATTAAT | 1 cut(s) | 60 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 341 |
| XapI | RAATTY | 2 cut(s) | 419, 859 |
| XbaI | TCTAGA | 1 cut(s) | 776 |
| XmaI | CCCGGG | 1 cut(s) | 746 |
| XmaJI | CCTAGG | 1 cut(s) | 755 |
| XmnI | GAANNNNTTC | 1 cut(s) | 514 |
| XspI | CTAG | 4 cut(s) | 393, 756, 777, 849 |