isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 577 |
| Acc16I | TGCGCA | 1 cut(s) | 25 |
| Acc65I | GGTACC | 1 cut(s) | 454 |
| AccB1I | GGYRCC | 1 cut(s) | 454 |
| AciI | CCGC | 1 cut(s) | 253 |
| AclWI | GGATC | 2 cut(s) | 548, 561 |
| AcsI | RAATTY | 1 cut(s) | 274 |
| AcyI | GRCGYC | 1 cut(s) | 574 |
| AfaI | GTAC | 2 cut(s) | 161, 456 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 259, 328, 563 |
| AflIII | ACRYGT | 1 cut(s) | 375 |
| AgsI | TTSAA | 7 cut(s) | 64, 73, 109, 177, 259, 404, 508 |
| AjiI | CACGTC | 1 cut(s) | 376 |
| AjnI | CCWGG | 1 cut(s) | 148 |
| AluBI | AGCT | 3 cut(s) | 201, 223, 491 |
| AluI | AGCT | 3 cut(s) | 201, 223, 491 |
| Alw21I | GWGCWC | 1 cut(s) | 225 |
| AlwI | GGATC | 2 cut(s) | 548, 561 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 494 |
| ApoI | RAATTY | 1 cut(s) | 274 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 68 |
| Asp718I | GGTACC | 1 cut(s) | 454 |
| AspLEI | GCGC | 1 cut(s) | 26 |
| AsuC2I | CCSGG | 1 cut(s) | 534 |
| AsuHPI | GGTGA | 2 cut(s) | 176, 274 |
| BamHI | GGATCC | 1 cut(s) | 553 |
| BanI | GGYRCC | 1 cut(s) | 454 |
| BanII | GRGCYC | 1 cut(s) | 225 |
| BbsI | GAAGAC | 2 cut(s) | 370, 411 |
| Bbv12I | GWGCWC | 1 cut(s) | 225 |
| BbvCI | CCTCAGC | 1 cut(s) | 54 |
| BccI | CCATC | 1 cut(s) | 239 |
| BciT130I | CCWGG | 1 cut(s) | 150 |
| BcnI | CCSGG | 1 cut(s) | 534 |
| Bme1390I | CCNGG | 2 cut(s) | 150, 534 |
| BmgBI | CACGTC | 1 cut(s) | 376 |
| BmiI | GGNNCC | 2 cut(s) | 456, 555 |
| BmrFI | CCNGG | 2 cut(s) | 150, 534 |
| BmsI | GCATC | 2 cut(s) | 255, 258 |
| BpiI | GAAGAC | 2 cut(s) | 370, 411 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| BpuMI | CCSGG | 1 cut(s) | 534 |
| BsaHI | GRCGYC | 1 cut(s) | 574 |
| BsaJI | CCNNGG | 1 cut(s) | 148 |
| BsaWI | WCCGGW | 1 cut(s) | 463 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 259, 328, 563 |
| BseBI | CCWGG | 1 cut(s) | 150 |
| BseDI | CCNNGG | 1 cut(s) | 148 |
| BseGI | GGATG | 2 cut(s) | 249, 445 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 259, 328, 563 |
| BseMII | CTCAG | 1 cut(s) | 45 |
| BseYI | CCCAGC | 1 cut(s) | 201 |
| BshNI | GGYRCC | 1 cut(s) | 454 |
| BsiHKAI | GWGCWC | 1 cut(s) | 225 |
| BsiSI | CCGG | 2 cut(s) | 464, 534 |
| BslFI | GGGAC | 1 cut(s) | 386 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 259, 328, 563 |
| BsmFI | GGGAC | 1 cut(s) | 386 |
| Bsp1286I | GDGCHC | 1 cut(s) | 225 |
| Bsp143I | GATC | 2 cut(s) | 383, 553 |
| BspACI | CCGC | 1 cut(s) | 253 |
| BspCNI | CTCAG | 1 cut(s) | 46 |
| BspLI | GGNNCC | 2 cut(s) | 456, 555 |
| BspPI | GGATC | 2 cut(s) | 548, 561 |
| BspQI | GCTCTTC | 1 cut(s) | 207 |
| BspT107I | GGYRCC | 1 cut(s) | 454 |
| BssECI | CCNNGG | 1 cut(s) | 148 |
| BssMI | GATC | 2 cut(s) | 383, 553 |
| BssNI | GRCGYC | 1 cut(s) | 574 |
| Bst2UI | CCWGG | 1 cut(s) | 150 |
| Bst4CI | ACNGT | 2 cut(s) | 164, 443 |
| Bst6I | CTCTTC | 1 cut(s) | 207 |
| BstACI | GRCGYC | 1 cut(s) | 574 |
| BstDEI | CTNAG | 1 cut(s) | 54 |
| BstF5I | GGATG | 2 cut(s) | 249, 445 |
| BstHHI | GCGC | 1 cut(s) | 26 |
| BstKTI | GATC | 2 cut(s) | 386, 556 |
| BstMBI | GATC | 2 cut(s) | 383, 553 |
| BstNI | CCWGG | 1 cut(s) | 150 |
| BstSCI | CCNGG | 2 cut(s) | 148, 532 |
| BstV2I | GAAGAC | 2 cut(s) | 370, 411 |
| BstX2I | RGATCY | 1 cut(s) | 553 |
| BstYI | RGATCY | 1 cut(s) | 553 |
| BtrI | CACGTC | 1 cut(s) | 376 |
| BtsCI | GGATG | 2 cut(s) | 249, 445 |
| BtsI | GCAGTG | 2 cut(s) | 574, 594 |
| BtsIMutI | CAGTG | 2 cut(s) | 574, 594 |
| CaiI | CAGNNNCTG | 1 cut(s) | 494 |
| CfoI | GCGC | 1 cut(s) | 26 |
| Csp6I | GTAC | 2 cut(s) | 160, 455 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 550, 585 |
| CviAII | CATG | 1 cut(s) | 303 |
| CviJI | RGCY | 4 cut(s) | 201, 223, 296, 491 |
| CviKI_1 | RGCY | 4 cut(s) | 201, 223, 296, 491 |
| CviQI | GTAC | 2 cut(s) | 160, 455 |
| DdeI | CTNAG | 1 cut(s) | 54 |
| DpnI | GATC | 2 cut(s) | 385, 555 |
| DpnII | GATC | 2 cut(s) | 383, 553 |
| Eam1104I | CTCTTC | 1 cut(s) | 207 |
| EarI | CTCTTC | 1 cut(s) | 207 |
| Ecl136II | GAGCTC | 1 cut(s) | 223 |
| Eco24I | GRGCYC | 1 cut(s) | 225 |
| Eco53kI | GAGCTC | 1 cut(s) | 223 |
| EcoICRI | GAGCTC | 1 cut(s) | 223 |
| EcoRI | GAATTC | 1 cut(s) | 274 |
| EcoRII | CCWGG | 1 cut(s) | 148 |
| EcoT38I | GRGCYC | 1 cut(s) | 225 |
| FaeI | CATG | 1 cut(s) | 306 |
| FaiI | YATR | 9 cut(s) | 28, 30, 182, 234, 304, 319, 396, 461, 607 |
| FaqI | GGGAC | 1 cut(s) | 386 |
| FatI | CATG | 1 cut(s) | 302 |
| FauNDI | CATATG | 1 cut(s) | 28 |
| FokI | GGATG | 2 cut(s) | 236, 432 |
| FriOI | GRGCYC | 1 cut(s) | 225 |
| FspI | TGCGCA | 1 cut(s) | 25 |
| GlaI | GCGC | 1 cut(s) | 25 |
| GsaI | CCCAGC | 1 cut(s) | 205 |
| HapII | CCGG | 2 cut(s) | 464, 534 |
| HhaI | GCGC | 1 cut(s) | 26 |
| Hin1I | GRCGYC | 1 cut(s) | 574 |
| Hin1II | CATG | 1 cut(s) | 306 |
| Hin6I | GCGC | 1 cut(s) | 24 |
| HinP1I | GCGC | 1 cut(s) | 24 |
| HincII | GTYRAC | 2 cut(s) | 343, 481 |
| HindII | GTYRAC | 2 cut(s) | 343, 481 |
| HinfI | GANTC | 2 cut(s) | 188, 485 |
| HpaII | CCGG | 2 cut(s) | 464, 534 |
| HphI | GGTGA | 2 cut(s) | 176, 274 |
| Hpy166II | GTNNAC | 3 cut(s) | 343, 481, 572 |
| Hpy188I | TCNGA | 3 cut(s) | 209, 280, 424 |
| Hpy188III | TCNNGA | 1 cut(s) | 505 |
| Hpy8I | GTNNAC | 3 cut(s) | 343, 481, 572 |
| HpyAV | CCTTC | 3 cut(s) | 74, 253, 322 |
| HpyCH4III | ACNGT | 2 cut(s) | 164, 443 |
| HpyCH4IV | ACGT | 3 cut(s) | 375, 468, 574 |
| HpyCH4V | TGCA | 2 cut(s) | 268, 594 |
| HpyF3I | CTNAG | 1 cut(s) | 54 |
| HpySE526I | ACGT | 3 cut(s) | 375, 468, 574 |
| Hsp92I | GRCGYC | 1 cut(s) | 574 |
| Hsp92II | CATG | 1 cut(s) | 306 |
| HspAI | GCGC | 1 cut(s) | 24 |
| KpnI | GGTACC | 1 cut(s) | 458 |
| Kzo9I | GATC | 2 cut(s) | 383, 553 |
| LguI | GCTCTTC | 1 cut(s) | 207 |
| LmnI | GCTCC | 1 cut(s) | 228 |
| LpnPI | CCDG | 7 cut(s) | 132, 135, 162, 187, 437, 477, 547 |
| LweI | GCATC | 2 cut(s) | 255, 258 |
| MaeII | ACGT | 3 cut(s) | 375, 468, 574 |
| MaeIII | GTNAC | 2 cut(s) | 437, 575 |
| MalI | GATC | 2 cut(s) | 385, 555 |
| MboI | GATC | 2 cut(s) | 383, 553 |
| MboII | GAAGA | 3 cut(s) | 224, 375, 416 |
| MflI | RGATCY | 1 cut(s) | 553 |
| MhlI | GDGCHC | 1 cut(s) | 225 |
| MluCI | AATT | 6 cut(s) | 47, 59, 127, 274, 336, 391 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MnlI | CCTC | 6 cut(s) | 49, 286, 459, 468, 522, 540 |
| MroXI | GAANNNNTTC | 1 cut(s) | 68 |
| MseI | TTAA | 2 cut(s) | 14, 195 |
| MspI | CCGG | 2 cut(s) | 464, 534 |
| MspR9I | CCNGG | 2 cut(s) | 150, 534 |
| MvaI | CCWGG | 1 cut(s) | 150 |
| NciI | CCSGG | 1 cut(s) | 534 |
| NdeI | CATATG | 1 cut(s) | 28 |
| NdeII | GATC | 2 cut(s) | 383, 553 |
| NlaIII | CATG | 1 cut(s) | 306 |
| NlaIV | GGNNCC | 2 cut(s) | 456, 555 |
| NmuCI | GTSAC | 1 cut(s) | 575 |
| NsbI | TGCGCA | 1 cut(s) | 25 |
| PciSI | GCTCTTC | 1 cut(s) | 207 |
| PdmI | GAANNNNTTC | 1 cut(s) | 68 |
| PfeI | GAWTC | 1 cut(s) | 485 |
| PflFI | GACNNNGTC | 1 cut(s) | 500 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| Psp124BI | GAGCTC | 1 cut(s) | 225 |
| Psp6I | CCWGG | 1 cut(s) | 148 |
| PspFI | CCCAGC | 1 cut(s) | 201 |
| PspGI | CCWGG | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 2 cut(s) | 456, 555 |
| PstNI | CAGNNNCTG | 1 cut(s) | 494 |
| PsuI | RGATCY | 1 cut(s) | 553 |
| PsyI | GACNNNGTC | 1 cut(s) | 500 |
| RsaI | GTAC | 2 cut(s) | 161, 456 |
| RsaNI | GTAC | 2 cut(s) | 160, 455 |
| SacI | GAGCTC | 1 cut(s) | 225 |
| SapI | GCTCTTC | 1 cut(s) | 207 |
| SaqAI | TTAA | 2 cut(s) | 14, 195 |
| Sau3AI | GATC | 2 cut(s) | 383, 553 |
| SchI | GAGTC | 1 cut(s) | 197 |
| ScrFI | CCNGG | 2 cut(s) | 150, 534 |
| SduI | GDGCHC | 1 cut(s) | 225 |
| SfaNI | GCATC | 2 cut(s) | 255, 258 |
| Sse9I | AATT | 6 cut(s) | 47, 59, 127, 274, 336, 391 |
| SsiI | CCGC | 1 cut(s) | 253 |
| SstI | GAGCTC | 1 cut(s) | 225 |
| StyD4I | CCNGG | 2 cut(s) | 148, 532 |
| TaaI | ACNGT | 2 cut(s) | 164, 443 |
| TaiI | ACGT | 3 cut(s) | 378, 471, 577 |
| TaqI | TCGA | 3 cut(s) | 243, 354, 382 |
| TasI | AATT | 6 cut(s) | 47, 59, 127, 274, 336, 391 |
| TfiI | GAWTC | 1 cut(s) | 485 |
| Tru1I | TTAA | 2 cut(s) | 14, 195 |
| Tru9I | TTAA | 2 cut(s) | 14, 195 |
| TscAI | CASTG | 2 cut(s) | 574, 601 |
| TseFI | GTSAC | 1 cut(s) | 575 |
| Tsp45I | GTSAC | 1 cut(s) | 575 |
| TspDTI | ATGAA | 2 cut(s) | 138, 287 |
| TspRI | CASTG | 2 cut(s) | 574, 601 |
| Tth111I | GACNNNGTC | 1 cut(s) | 500 |
| XapI | RAATTY | 1 cut(s) | 274 |
| XmnI | GAANNNNTTC | 1 cut(s) | 68 |
| ZraI | GACGTC | 1 cut(s) | 575 |