MuDR family transposase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 606 |
| AarI | CACCTGC | 2 cut(s) | 1802, 1833 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 68, 1405 |
| Acc36I | ACCTGC | 2 cut(s) | 1802, 1833 |
| AccI | GTMKAC | 3 cut(s) | 668, 1465, 1783 |
| AccII | CGCG | 2 cut(s) | 405, 460 |
| AccIII | TCCGGA | 1 cut(s) | 471 |
| AciI | CCGC | 7 cut(s) | 344, 985, 1021, 1286, 1354, 1546, 1616 |
| AclI | AACGTT | 1 cut(s) | 1104 |
| AclWI | GGATC | 5 cut(s) | 828, 841, 1622, 1795, 1808 |
| AcoI | YGGCCR | 1 cut(s) | 986 |
| AcsI | RAATTY | 8 cut(s) | 239, 260, 462, 525, 636, 744, 803, 1202 |
| AcuI | CTGAAG | 1 cut(s) | 954 |
| AcyI | GRCGYC | 1 cut(s) | 1387 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 182, 1429, 1489, 1811 |
| AjnI | CCWGG | 4 cut(s) | 9, 909, 1249, 1777 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 401, 433 |
| AluBI | AGCT | 7 cut(s) | 378, 1043, 1140, 1324, 1363, 1438, 1450 |
| AluI | AGCT | 7 cut(s) | 378, 1043, 1140, 1324, 1363, 1438, 1450 |
| Alw21I | GWGCWC | 2 cut(s) | 1277, 1594 |
| Alw26I | GTCTC | 1 cut(s) | 204 |
| Alw44I | GTGCAC | 1 cut(s) | 1590 |
| AlwI | GGATC | 5 cut(s) | 828, 841, 1622, 1795, 1808 |
| Aor13HI | TCCGGA | 1 cut(s) | 471 |
| AoxI | GGCC | 2 cut(s) | 986, 1030 |
| ApaLI | GTGCAC | 1 cut(s) | 1590 |
| ApeKI | GCWGC | 4 cut(s) | 1324, 1379, 1394, 1604 |
| ApoI | RAATTY | 8 cut(s) | 239, 260, 462, 525, 636, 744, 803, 1202 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 488, 520, 804, 836 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1044 |
| AspLEI | GCGC | 3 cut(s) | 407, 460, 875 |
| AsuHPI | GGTGA | 4 cut(s) | 997, 1369, 1637, 1826 |
| AsuII | TTCGAA | 1 cut(s) | 529 |
| BaeGI | GKGCMC | 1 cut(s) | 1594 |
| BamHI | GGATCC | 2 cut(s) | 833, 1800 |
| BbsI | GAAGAC | 3 cut(s) | 218, 710, 1218 |
| Bbv12I | GWGCWC | 2 cut(s) | 1277, 1594 |
| BbvI | GCAGC | 4 cut(s) | 1311, 1366, 1406, 1616 |
| BccI | CCATC | 4 cut(s) | 128, 481, 824, 1129 |
| BceAI | ACGGC | 1 cut(s) | 664 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 434, 468 |
| BciT130I | CCWGG | 4 cut(s) | 11, 911, 1251, 1779 |
| BcoDI | GTCTC | 1 cut(s) | 204 |
| BfaI | CTAG | 2 cut(s) | 1125, 1208 |
| BfmI | CTRYAG | 3 cut(s) | 921, 1681, 1809 |
| BfuAI | ACCTGC | 2 cut(s) | 1802, 1833 |
| BisI | GCNGC | 5 cut(s) | 986, 1325, 1380, 1395, 1605 |
| BlsI | GCNGC | 5 cut(s) | 987, 1326, 1381, 1396, 1606 |
| Bme1390I | CCNGG | 4 cut(s) | 11, 911, 1251, 1779 |
| BmiI | GGNNCC | 3 cut(s) | 835, 1647, 1802 |
| BmrFI | CCNGG | 4 cut(s) | 11, 911, 1251, 1779 |
| BmrI | ACTGGG | 2 cut(s) | 888, 1480 |
| BmsI | GCATC | 2 cut(s) | 76, 682 |
| BmuI | ACTGGG | 2 cut(s) | 888, 1480 |
| BpiI | GAAGAC | 3 cut(s) | 218, 710, 1218 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| Bpu14I | TTCGAA | 1 cut(s) | 529 |
| BpuEI | CTTGAG | 2 cut(s) | 165, 752 |
| Bsa29I | ATCGAT | 1 cut(s) | 1829 |
| BsaAI | YACGTR | 1 cut(s) | 1790 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1120 |
| BsaHI | GRCGYC | 1 cut(s) | 1387 |
| BsaJI | CCNNGG | 4 cut(s) | 895, 909, 1249, 1777 |
| BsaWI | WCCGGW | 1 cut(s) | 471 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 770, 800, 1424, 1454 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 182, 1429, 1489, 1811 |
| Bse1I | ACTGG | 3 cut(s) | 883, 1154, 1475 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1120 |
| BseAI | TCCGGA | 1 cut(s) | 471 |
| BseBI | CCWGG | 4 cut(s) | 11, 911, 1251, 1779 |
| BseCI | ATCGAT | 1 cut(s) | 1829 |
| BseDI | CCNNGG | 4 cut(s) | 895, 909, 1249, 1777 |
| BseGI | GGATG | 6 cut(s) | 10, 109, 139, 157, 1480, 1624 |
| BseJI | GATNNNNATC | 1 cut(s) | 1120 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 182, 1429, 1489, 1811 |
| BseMII | CTCAG | 2 cut(s) | 81, 686 |
| BseNI | ACTGG | 3 cut(s) | 883, 1154, 1475 |
| BseRI | GAGGAG | 2 cut(s) | 165, 168 |
| BseSI | GKGCMC | 1 cut(s) | 1594 |
| BseXI | GCAGC | 4 cut(s) | 1311, 1366, 1406, 1616 |
| BseYI | CCCAGC | 1 cut(s) | 868 |
| BsgI | GTGCAG | 1 cut(s) | 1413 |
| Bsh1236I | CGCG | 2 cut(s) | 405, 460 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1021, 1487 |
| BshFI | GGCC | 2 cut(s) | 988, 1032 |
| BshVI | ATCGAT | 1 cut(s) | 1829 |
| BsiEI | CGRYCG | 2 cut(s) | 1021, 1487 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1277, 1594 |
| BsiSI | CCGG | 1 cut(s) | 472 |
| BslFI | GGGAC | 2 cut(s) | 281, 1682 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 182, 1429, 1489, 1811 |
| BsmAI | GTCTC | 1 cut(s) | 204 |
| BsmFI | GGGAC | 2 cut(s) | 281, 1682 |
| BsnI | GGCC | 2 cut(s) | 988, 1032 |
| Bsp119I | TTCGAA | 1 cut(s) | 529 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1277, 1594 |
| Bsp13I | TCCGGA | 1 cut(s) | 471 |
| Bsp143I | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| BspACI | CCGC | 7 cut(s) | 344, 985, 1021, 1286, 1354, 1546, 1616 |
| BspANI | GGCC | 2 cut(s) | 988, 1032 |
| BspCNI | CTCAG | 2 cut(s) | 82, 685 |
| BspDI | ATCGAT | 1 cut(s) | 1829 |
| BspEI | TCCGGA | 1 cut(s) | 471 |
| BspFNI | CGCG | 2 cut(s) | 405, 460 |
| BspHI | TCATGA | 3 cut(s) | 202, 354, 1510 |
| BspLI | GGNNCC | 3 cut(s) | 835, 1647, 1802 |
| BspMAI | CTGCAG | 1 cut(s) | 1813 |
| BspMI | ACCTGC | 2 cut(s) | 1802, 1833 |
| BspPI | GGATC | 5 cut(s) | 828, 841, 1622, 1795, 1808 |
| BspT104I | TTCGAA | 1 cut(s) | 529 |
| BsrI | ACTGG | 3 cut(s) | 883, 1154, 1475 |
| BssECI | CCNNGG | 4 cut(s) | 895, 909, 1249, 1777 |
| BssMI | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| BssNAI | GTATAC | 1 cut(s) | 669 |
| BssNI | GRCGYC | 1 cut(s) | 1387 |
| BssT1I | CCWWGG | 1 cut(s) | 895 |
| Bst1107I | GTATAC | 1 cut(s) | 669 |
| Bst2UI | CCWGG | 4 cut(s) | 11, 911, 1251, 1779 |
| Bst4CI | ACNGT | 5 cut(s) | 21, 82, 725, 1612, 1660 |
| Bst6I | CTCTTC | 3 cut(s) | 93, 123, 773 |
| BstACI | GRCGYC | 1 cut(s) | 1387 |
| BstBAI | YACGTR | 1 cut(s) | 1790 |
| BstBI | TTCGAA | 1 cut(s) | 529 |
| BstC8I | GCNNGC | 2 cut(s) | 363, 380 |
| BstDEI | CTNAG | 3 cut(s) | 90, 672, 961 |
| BstEII | GGTNACC | 2 cut(s) | 890, 1739 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 180 |
| BstF5I | GGATG | 6 cut(s) | 10, 109, 139, 157, 1480, 1624 |
| BstFNI | CGCG | 2 cut(s) | 405, 460 |
| BstHHI | GCGC | 3 cut(s) | 407, 460, 875 |
| BstKTI | GATC | 8 cut(s) | 227, 836, 1487, 1537, 1630, 1803, 1829, 1833 |
| BstMAI | GTCTC | 1 cut(s) | 204 |
| BstMBI | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| BstMCI | CGRYCG | 2 cut(s) | 1021, 1487 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1029, 1324, 1360, 1604, 1613 |
| BstNI | CCWGG | 4 cut(s) | 11, 911, 1251, 1779 |
| BstNSI | RCATGY | 3 cut(s) | 365, 1554, 1598 |
| BstPI | GGTNACC | 2 cut(s) | 890, 1739 |
| BstSCI | CCNGG | 4 cut(s) | 9, 909, 1249, 1777 |
| BstSFI | CTRYAG | 3 cut(s) | 921, 1681, 1809 |
| BstSLI | GKGCMC | 1 cut(s) | 1594 |
| BstUI | CGCG | 2 cut(s) | 405, 460 |
| BstV1I | GCAGC | 4 cut(s) | 1311, 1366, 1406, 1616 |
| BstV2I | GAAGAC | 3 cut(s) | 218, 710, 1218 |
| BstX2I | RGATCY | 2 cut(s) | 833, 1800 |
| BstYI | RGATCY | 2 cut(s) | 833, 1800 |
| BstZ17I | GTATAC | 1 cut(s) | 669 |
| Bsu15I | ATCGAT | 1 cut(s) | 1829 |
| BsuRI | GGCC | 2 cut(s) | 988, 1032 |
| BsuTUI | ATCGAT | 1 cut(s) | 1829 |
| BtgZI | GCGATG | 1 cut(s) | 666 |
| BtsCI | GGATG | 6 cut(s) | 10, 109, 139, 157, 1480, 1624 |
| BtsIMutI | CAGTG | 3 cut(s) | 721, 1468, 1656 |
| BveI | ACCTGC | 2 cut(s) | 1802, 1833 |
| Cac8I | GCNNGC | 2 cut(s) | 363, 380 |
| CciI | TCATGA | 3 cut(s) | 202, 354, 1510 |
| CfoI | GCGC | 3 cut(s) | 407, 460, 875 |
| ClaI | ATCGAT | 1 cut(s) | 1829 |
| CseI | GACGC | 1 cut(s) | 1376 |
| DdeI | CTNAG | 3 cut(s) | 90, 672, 961 |
| DpnI | GATC | 8 cut(s) | 226, 835, 1486, 1536, 1629, 1802, 1828, 1832 |
| DpnII | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 68, 1405 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 68, 1405 |
| EaeI | YGGCCR | 1 cut(s) | 986 |
| Eam1104I | CTCTTC | 3 cut(s) | 93, 123, 773 |
| EarI | CTCTTC | 3 cut(s) | 93, 123, 773 |
| EciI | GGCGGA | 1 cut(s) | 1301 |
| Eco130I | CCWWGG | 1 cut(s) | 895 |
| Eco147I | AGGCCT | 1 cut(s) | 1032 |
| Eco32I | GATATC | 1 cut(s) | 58 |
| Eco57I | CTGAAG | 1 cut(s) | 954 |
| Eco91I | GGTNACC | 2 cut(s) | 890, 1739 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 180 |
| EcoO65I | GGTNACC | 2 cut(s) | 890, 1739 |
| EcoRI | GAATTC | 1 cut(s) | 462 |
| EcoRII | CCWGG | 4 cut(s) | 9, 909, 1249, 1777 |
| EcoRV | GATATC | 1 cut(s) | 58 |
| EcoT14I | CCWWGG | 1 cut(s) | 895 |
| EcoT22I | ATGCAT | 2 cut(s) | 613, 697 |
| ErhI | CCWWGG | 1 cut(s) | 895 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 752, 784, 1020, 1052 |
| FaqI | GGGAC | 2 cut(s) | 281, 1682 |
| FauI | CCCGC | 2 cut(s) | 1347, 1553 |
| FauNDI | CATATG | 1 cut(s) | 1639 |
| FblI | GTMKAC | 3 cut(s) | 668, 1465, 1783 |
| Fnu4HI | GCNGC | 5 cut(s) | 986, 1325, 1380, 1395, 1605 |
| FokI | GGATG | 6 cut(s) | 17, 116, 146, 164, 1487, 1631 |
| Fsp4HI | GCNGC | 5 cut(s) | 986, 1325, 1380, 1395, 1605 |
| FspBI | CTAG | 2 cut(s) | 1125, 1208 |
| GlaI | GCGC | 3 cut(s) | 406, 459, 874 |
| GluI | GCNGC | 5 cut(s) | 986, 1325, 1380, 1395, 1605 |
| GsaI | CCCAGC | 1 cut(s) | 872 |
| HaeIII | GGCC | 2 cut(s) | 988, 1032 |
| HapII | CCGG | 1 cut(s) | 472 |
| HgaI | GACGC | 1 cut(s) | 1376 |
| HhaI | GCGC | 3 cut(s) | 407, 460, 875 |
| Hin1I | GRCGYC | 1 cut(s) | 1387 |
| Hin6I | GCGC | 3 cut(s) | 405, 458, 873 |
| HinP1I | GCGC | 3 cut(s) | 405, 458, 873 |
| HincII | GTYRAC | 2 cut(s) | 928, 1410 |
| HindII | GTYRAC | 2 cut(s) | 928, 1410 |
| HinfI | GANTC | 9 cut(s) | 400, 414, 468, 659, 765, 929, 1064, 1191, 1289 |
| HpaII | CCGG | 1 cut(s) | 472 |
| HphI | GGTGA | 4 cut(s) | 997, 1369, 1637, 1826 |
| Hpy166II | GTNNAC | 7 cut(s) | 646, 669, 928, 1410, 1466, 1592, 1784 |
| Hpy188I | TCNGA | 6 cut(s) | 934, 1018, 1069, 1110, 1708, 1872 |
| Hpy8I | GTNNAC | 7 cut(s) | 646, 669, 928, 1410, 1466, 1592, 1784 |
| Hpy99I | CGWCG | 4 cut(s) | 667, 743, 1392, 1492 |
| HpyAV | CCTTC | 8 cut(s) | 362, 788, 1018, 1043, 1338, 1534, 1616, 1791 |
| HpyCH4III | ACNGT | 5 cut(s) | 21, 82, 725, 1612, 1660 |
| HpyCH4IV | ACGT | 3 cut(s) | 754, 1104, 1789 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1029, 1324, 1360, 1604, 1613 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 672, 961 |
| HpySE526I | ACGT | 3 cut(s) | 754, 1104, 1789 |
| Hsp92I | GRCGYC | 1 cut(s) | 1387 |
| HspAI | GCGC | 3 cut(s) | 405, 458, 873 |
| Kpn2I | TCCGGA | 1 cut(s) | 471 |
| Kzo9I | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| LmnI | GCTCC | 2 cut(s) | 178, 331 |
| Lsp1109I | GCAGC | 4 cut(s) | 1311, 1366, 1406, 1616 |
| LweI | GCATC | 2 cut(s) | 76, 682 |
| MaeI | CTAG | 2 cut(s) | 1125, 1208 |
| MaeII | ACGT | 3 cut(s) | 754, 1104, 1789 |
| MaeIII | GTNAC | 7 cut(s) | 253, 337, 750, 797, 890, 1145, 1739 |
| MalI | GATC | 8 cut(s) | 226, 835, 1486, 1536, 1629, 1802, 1828, 1832 |
| MboI | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| MboII | GAAGA | 9 cut(s) | 110, 140, 223, 409, 715, 760, 895, 947, 1223 |
| MfeI | CAATTG | 2 cut(s) | 946, 1337 |
| MflI | RGATCY | 2 cut(s) | 833, 1800 |
| MhlI | GDGCHC | 2 cut(s) | 1277, 1594 |
| MlyI | GAGTC | 4 cut(s) | 462, 759, 923, 1298 |
| MmeI | TCCRAC | 1 cut(s) | 1041 |
| Mph1103I | ATGCAT | 2 cut(s) | 613, 697 |
| MroI | TCCGGA | 1 cut(s) | 471 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1044 |
| MseI | TTAA | 4 cut(s) | 426, 1167, 1344, 1752 |
| MslI | CAYNNNNRTG | 3 cut(s) | 582, 651, 1473 |
| MspA1I | CMGCKG | 1 cut(s) | 344 |
| MspI | CCGG | 1 cut(s) | 472 |
| MspR9I | CCNGG | 4 cut(s) | 11, 911, 1251, 1779 |
| MunI | CAATTG | 2 cut(s) | 946, 1337 |
| MvaI | CCWGG | 4 cut(s) | 11, 911, 1251, 1779 |
| MvnI | CGCG | 2 cut(s) | 405, 460 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1029, 1324, 1360, 1604, 1613 |
| NdeI | CATATG | 1 cut(s) | 1639 |
| NdeII | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| NlaIV | GGNNCC | 3 cut(s) | 835, 1647, 1802 |
| NmuCI | GTSAC | 1 cut(s) | 750 |
| NsiI | ATGCAT | 2 cut(s) | 613, 697 |
| NspI | RCATGY | 3 cut(s) | 365, 1554, 1598 |
| NspV | TTCGAA | 1 cut(s) | 529 |
| PaeI | GCATGC | 1 cut(s) | 365 |
| PagI | TCATGA | 3 cut(s) | 202, 354, 1510 |
| PaqCI | CACCTGC | 2 cut(s) | 1802, 1833 |
| PceI | AGGCCT | 1 cut(s) | 1032 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 760 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1044 |
| PfeI | GAWTC | 5 cut(s) | 400, 414, 659, 1064, 1191 |
| PkrI | GCNGC | 5 cut(s) | 987, 1326, 1381, 1396, 1606 |
| Ple19I | CGATCG | 1 cut(s) | 1487 |
| PleI | GAGTC | 4 cut(s) | 462, 759, 923, 1297 |
| PpsI | GAGTC | 4 cut(s) | 462, 759, 923, 1297 |
| Ppu21I | YACGTR | 1 cut(s) | 1790 |
| PsiI | TTATAA | 1 cut(s) | 606 |
| Psp1406I | AACGTT | 1 cut(s) | 1104 |
| Psp6I | CCWGG | 4 cut(s) | 9, 909, 1249, 1777 |
| PspEI | GGTNACC | 2 cut(s) | 890, 1739 |
| PspFI | CCCAGC | 1 cut(s) | 868 |
| PspGI | CCWGG | 4 cut(s) | 9, 909, 1249, 1777 |
| PspN4I | GGNNCC | 3 cut(s) | 835, 1647, 1802 |
| PstI | CTGCAG | 1 cut(s) | 1813 |
| PsuI | RGATCY | 2 cut(s) | 833, 1800 |
| PvuI | CGATCG | 1 cut(s) | 1487 |
| RseI | CAYNNNNRTG | 3 cut(s) | 582, 651, 1473 |
| SaqAI | TTAA | 4 cut(s) | 426, 1167, 1344, 1752 |
| SatI | GCNGC | 5 cut(s) | 986, 1325, 1380, 1395, 1605 |
| Sau3AI | GATC | 8 cut(s) | 224, 833, 1484, 1534, 1627, 1800, 1826, 1830 |
| SchI | GAGTC | 4 cut(s) | 462, 759, 923, 1298 |
| ScrFI | CCNGG | 4 cut(s) | 11, 911, 1251, 1779 |
| SduI | GDGCHC | 2 cut(s) | 1277, 1594 |
| SfaNI | GCATC | 2 cut(s) | 76, 682 |
| SfcI | CTRYAG | 3 cut(s) | 921, 1681, 1809 |
| SfuI | TTCGAA | 1 cut(s) | 529 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 582, 651, 1473 |
| SmlI | CTYRAG | 2 cut(s) | 180, 731 |
| SmoI | CTYRAG | 2 cut(s) | 180, 731 |
| SphI | GCATGC | 1 cut(s) | 365 |
| SseBI | AGGCCT | 1 cut(s) | 1032 |
| SsiI | CCGC | 7 cut(s) | 344, 985, 1021, 1286, 1354, 1546, 1616 |
| SspI | AATATT | 1 cut(s) | 970 |
| SspMI | CTAG | 2 cut(s) | 1125, 1208 |
| StuI | AGGCCT | 1 cut(s) | 1032 |
| StyD4I | CCNGG | 4 cut(s) | 9, 909, 1249, 1777 |
| StyI | CCWWGG | 1 cut(s) | 895 |
| TaaI | ACNGT | 5 cut(s) | 21, 82, 725, 1612, 1660 |
| TaiI | ACGT | 3 cut(s) | 757, 1107, 1792 |
| TaqI | TCGA | 9 cut(s) | 32, 60, 84, 243, 454, 466, 529, 1487, 1829 |
| TauI | GCSGC | 1 cut(s) | 988 |
| TfiI | GAWTC | 5 cut(s) | 400, 414, 659, 1064, 1191 |
| Tru1I | TTAA | 4 cut(s) | 426, 1167, 1344, 1752 |
| Tru9I | TTAA | 4 cut(s) | 426, 1167, 1344, 1752 |
| TscAI | CASTG | 3 cut(s) | 728, 1475, 1663 |
| TseFI | GTSAC | 1 cut(s) | 750 |
| TseI | GCWGC | 4 cut(s) | 1324, 1379, 1394, 1604 |
| Tsp45I | GTSAC | 1 cut(s) | 750 |
| TspGWI | ACGGA | 1 cut(s) | 1505 |
| TspRI | CASTG | 3 cut(s) | 728, 1475, 1663 |
| VneI | GTGCAC | 1 cut(s) | 1590 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 180 |
| XapI | RAATTY | 8 cut(s) | 239, 260, 462, 525, 636, 744, 803, 1202 |
| XbaI | TCTAGA | 2 cut(s) | 1124, 1207 |
| XceI | RCATGY | 3 cut(s) | 365, 1554, 1598 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1227 |
| XmiI | GTMKAC | 3 cut(s) | 668, 1465, 1783 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1044 |
| XspI | CTAG | 2 cut(s) | 1125, 1208 |
| Zsp2I | ATGCAT | 2 cut(s) | 613, 697 |