Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003906

Physical Location & Seq

Genomic Coordinates Reverse (-)

30649579 .. 30650398

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0191100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGTAAATGGACTGGTGGCATTGATGGAAGGCGAACATGTGGGGCCTTTCAACCTGGGAAATCCCGGGGAATTCACCATGCTAGAGCTTGCTGAGGTTGTGAAAGAAACAATTGATTCAAGTGCAACAATAGAATTCAGGCCAAATACTGCTAATGATCCTCATAAGAGGAAACCTGATATTGGCAAAGCAAAAGAGCTGTTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

69

Amino Acids

7.53

Weight (kDa)

4.98

Isoelectric Point (pI)

22.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760 AT2G18760
fragaria_vesca	FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200 FvH4_2g21200
malus_domestica	MD05G1194600.v1.1
prunus_persica	Prupe.8G221300_v2.0.a1
pyrus_communis	pycom05g18190 pycom10g15720
rosa_chinensis	RchiOBHm_Chr6g0287701
rosa_laevigata	RLG00000012472
rosa_multiflora	Rmu_sc0003335.1_g000002 Rmu_sc0037270.1_g000001 Rmu_sc0037271.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181080 Rroxscaffold_7G00181270
rosa_rugosa	Rorug06G0190800 Rorug06G0190900 Rorug06G0191000 Rorug06G0191100
rosa_samantha	Rh6AG301300 Rh6BG307000 Rh6CG302500 Rh6CG315200 Rh6DG298700
rosa_wichuraiana	Rw6G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	71, 134
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	52, 120
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	88, 199
AluI	AGCT	2 cut(s)	88, 199
AlwI	GGATC	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	44, 140
ApoI	RAATTY	2 cut(s)	71, 134
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	66, 67
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	93
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	2 cut(s)	66, 67
BfaI	CTAG	2 cut(s)	83, 208
Bme1390I	CCNGG	3 cut(s)	56, 66, 67
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	3 cut(s)	56, 66, 67
Bpu10I	CCTNAGC	1 cut(s)	93
BpuMI	CCSGG	2 cut(s)	66, 67
BsaJI	CCNNGG	3 cut(s)	55, 65, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	55, 65, 66
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	46, 142
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	182
BsnI	GGCC	2 cut(s)	46, 142
BsoBI	CYCGRG	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	157, 204
BspANI	GGCC	2 cut(s)	46, 142
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	55, 65, 66
BssMI	GATC	2 cut(s)	157, 204
Bst2UI	CCWGG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	160, 207
BstMBI	GATC	2 cut(s)	157, 204
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	54, 64, 65
BsuRI	GGCC	2 cut(s)	46, 142
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	44
Cfr9I	CCCGGG	1 cut(s)	65
CviAII	CATG	2 cut(s)	38, 79
CviJI	RGCY	4 cut(s)	46, 88, 142, 199
CviKI_1	RGCY	4 cut(s)	46, 88, 142, 199
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	159, 206
DpnII	GATC	2 cut(s)	157, 204
Eco88I	CYCGRG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRI	GAATTC	2 cut(s)	71, 134
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	41, 82
FaiI	YATR	3 cut(s)	39, 80, 165
FatI	CATG	2 cut(s)	37, 78
FspBI	CTAG	2 cut(s)	83, 208
HaeIII	GGCC	2 cut(s)	46, 142
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	2 cut(s)	41, 82
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	41, 82
Kzo9I	GATC	2 cut(s)	157, 204
LpnPI	CCDG	5 cut(s)	41, 68, 79, 124, 189
MaeI	CTAG	2 cut(s)	83, 208
MalI	GATC	2 cut(s)	159, 206
MboI	GATC	2 cut(s)	157, 204
MfeI	CAATTG	1 cut(s)	111
MluCI	AATT	3 cut(s)	71, 111, 134
MnlI	CCTC	3 cut(s)	88, 162, 171
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	3 cut(s)	56, 66, 67
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	56
NciI	CCSGG	2 cut(s)	66, 67
NdeII	GATC	2 cut(s)	157, 204
NlaIII	CATG	2 cut(s)	41, 82
NlaIV	GGNNCC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	41
PciI	ACATGT	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	44
Sau3AI	GATC	2 cut(s)	157, 204
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	56, 66, 67
SetI	ASST	5 cut(s)	57, 90, 99, 178, 201
SmaI	CCCGGG	1 cut(s)	67
Sse9I	AATT	3 cut(s)	71, 111, 134
SspMI	CTAG	2 cut(s)	83, 208
StyD4I	CCNGG	3 cut(s)	54, 64, 65
TasI	AATT	3 cut(s)	71, 111, 134
TfiI	GAWTC	1 cut(s)	116
TspMI	CCCGGG	1 cut(s)	65
XapI	RAATTY	2 cut(s)	71, 134
XceI	RCATGY	1 cut(s)	41
XmaI	CCCGGG	1 cut(s)	65
XspI	CTAG	2 cut(s)	83, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.