FvH4_2g21920

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
18100649 .. 18104836
4188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21920.t1

Sequence Viewer

Length: 1635 bp
ATGCATTCAGTGAAGCGTCTCCTATGCAATACACATTTCACCCGGAGCTTGATAAAGAGAGAGGAATCGTACCGGAGGTTGATATACAGCTTCGTGAATCGGTTTCAATCGCAACGGTCGAAAGCAGACAAGGTTGATTCAGACGCACTCAAAGAATCGAGTGTTGCTGTTGAAGCTTCGTTGAGGCGTAGAAAGGATGGCATTGGTGGTTGGAGTAGTGGGGATGATGATTTGAGCGAGATTAAGGAGAAAAAGTTGGAGGTTTCATGGCTTCCAAAGGCGCTTGAGCCGGCTCTGCAGTTGTGCAGGTGGGCTCTGGCTGGCCCAACAGGGAATGCAGTGGCAAACAAACCCCCGCCAAGTACTCGATCCGTATCGGAGATCATTTCAAGCATCCAACACAGTAAGACAGGCATTCAAGATTGGAGTTTGAGTGATCTCACCGTGGGTTTATTTCTTATTTATCTTCGTCAATCGTCTGTAAATCCATTTGAGAATATTAATGGTGTTCAGGTCTCATCAGATAGATTGGTACAAGACCTTATTTACCATGTCGAGTTGGCGAAAGGTTGTTATAAGGACAATACTGCTGCTCTCGCAAGGAACTGCATGCTTCGAGAAAGCAATGTCTTGAAGTTTGTCAAAAATTCTAATGTCATGAGGCCGGGTTATTATATAGGGATTGATACTCGTAGAAAACTTGTGATTCTAGGAATCCGTGGAACTCATACTGTGTATGACCTTATTACTGACGTTGTTTCTTCAAGTGATGGTGATGTCACTTTTGAAGGGTTTTCAACCCACTTCGGCACTGCAGAAGCTGCCCGTTGGTTTCTTACTCATGAAATGGGATATATAAAGAAGTGCTTGGAGAAGTATGAGGGATTTAAGTTAAGGCTTGTGGGTCATTCTCTTGGAGGTGCTACAGCTGCTCTACTAGCAATAATGCTCCGTAAAAAATCGTACAAGGAGCTAGGGTTTAGCCCAGAGATTGTTTCTGCTGTCGGATATGCAGCGCCACCTTGTGTCTCCAAAGAGCTTGCTGAAAGCTGCTCTGGTTATGTCAGAACTGTTGTGATGCAGGATGATATTATACCTAGACTTAGTGTAGCATCTCTTAAAAGGTTGAGGGATGAAATTCTTCAAACTGATTGGATGAGTGTGATTGAGAAGGAAGACTGGAGAAGTGTCATAGGTTTGGTGACAAATGCAAAGCAGGTTGTATCTTCGGTGCAAGACGTTGCAGCAAAACTTACTGATTATACAAAGTTCAAGAGCAATAATGATTCCCCAGATGATCCCATGATAAAGAAGGTACCCACTGATTCCAGAGTTCCTTTAAACGAAAAAACTGTAAGAGATATTGCTGTTGGTAGTCCAAATGGAGGAGCTGCCAGTGGAGTGCCTGAGGAGTTATTCGTACCAGGTACTGTTTACTACCTAAAGAGAAATGTGGATGCTCATACTAGTGATTATTTCACACTTTGGAAGAGGAATCCGGGTGAACATTTTGAGAGGATTGTGCTTTCAAGCAACTTAATATCAGACCACAAGTGTGATAGCCATTATTATGCGTTAAGAGATGTGCTCAAAGGTTTGCCCTCCTCCAATGATGAAGGCAATTCTCATAATTAA

Protein Analysis

545

Amino Acids

60.65

Weight (kDa)

8.76

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 237 - 370 9.4e-26 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AarI CACCTGC 1 cut(s) 297
Acc36I ACCTGC 2 cut(s) 297, 1207
Acc65I GGTACC 1 cut(s) 1315
AccB1I GGYRCC 1 cut(s) 1315
AciI CCGC 1 cut(s) 356
AclWI GGATC 2 cut(s) 363, 1292
AcsI RAATTY 2 cut(s) 646, 1137
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 7 cut(s) 71, 364, 534, 965, 1317, 1422, 1429
AfiI CCNNNNNNNGG 1 cut(s) 1385
AhlI ACTAGT 1 cut(s) 1466
AjnI CCWGG 1 cut(s) 1423
AleI CACNNNNGTG 1 cut(s) 1554
AluBI AGCT 9 cut(s) 48, 90, 176, 821, 929, 973, 1039, 1050, 1391
AluI AGCT 9 cut(s) 48, 90, 176, 821, 929, 973, 1039, 1050, 1391
Alw21I GWGCWC 1 cut(s) 1590
Alw26I GTCTC 3 cut(s) 23, 520, 1033
AlwI GGATC 2 cut(s) 363, 1292
AlwNI CAGNNNCTG 2 cut(s) 821, 1430
AoxI GGCC 2 cut(s) 322, 662
ApeKI GCWGC 7 cut(s) 590, 821, 929, 1013, 1050, 1244, 1391
ApoI RAATTY 2 cut(s) 646, 1137
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 1140
Asp718I GGTACC 1 cut(s) 1315
AspLEI GCGC 2 cut(s) 283, 1018
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 3 cut(s) 43, 666, 1500
AsuHPI GGTGA 5 cut(s) 31, 433, 785, 1213, 1514
AxyI CCTNAGG 1 cut(s) 1407
BanI GGYRCC 1 cut(s) 1315
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 1182
Bbv12I GWGCWC 1 cut(s) 1590
BbvI GCAGC 7 cut(s) 577, 808, 916, 1025, 1037, 1256, 1378
BccI CCATC 2 cut(s) 191, 764
BciT130I CCWGG 1 cut(s) 1425
BcnI CCSGG 3 cut(s) 43, 666, 1500
BcoDI GTCTC 3 cut(s) 23, 520, 1033
BcuI ACTAGT 1 cut(s) 1466
BfaI CTAG 5 cut(s) 710, 938, 974, 1098, 1467
BfmI CTRYAG 3 cut(s) 296, 813, 924
BfoI RGCGCY 2 cut(s) 284, 1019
BfuAI ACCTGC 2 cut(s) 297, 1207
BisI GCNGC 7 cut(s) 591, 822, 930, 1014, 1051, 1245, 1392
BlsI GCNGC 7 cut(s) 592, 823, 931, 1015, 1052, 1246, 1393
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 4 cut(s) 43, 666, 1425, 1500
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 1317
BmrFI CCNGG 4 cut(s) 43, 666, 1425, 1500
BmsI GCATC 4 cut(s) 402, 1068, 1121, 1447
BpiI GAAGAC 1 cut(s) 1182
BplI GAGNNNNNCTC 2 cut(s) 1572, 1604
BpmI CTGGAG 1 cut(s) 1201
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 3 cut(s) 43, 666, 1500
BsaBI GATNNNNATC 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 444, 718
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 418, 448, 962, 992
Bsc4I CCNNNNNNNGG 1 cut(s) 1385
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 1184, 1395
Bse21I CCTNAGG 1 cut(s) 1407
Bse3DI GCAATG 1 cut(s) 631
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 1 cut(s) 1425
BseDI CCNNGG 2 cut(s) 444, 718
BseGI GGATG 7 cut(s) 202, 229, 393, 1090, 1138, 1161, 1462
BseJI GATNNNNATC 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 1385
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 1398
BseNI ACTGG 2 cut(s) 1184, 1395
BseRI GAGGAG 3 cut(s) 1401, 1424, 1594
BseXI GCAGC 7 cut(s) 577, 808, 916, 1025, 1037, 1256, 1378
BsgI GTGCAG 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 324, 664
BshNI GGYRCC 1 cut(s) 1315
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 1590
BsiSI CCGG 5 cut(s) 43, 73, 290, 665, 1499
BslI CCNNNNNNNGG 1 cut(s) 1385
BsmAI GTCTC 3 cut(s) 23, 520, 1033
BsmBI CGTCTC 1 cut(s) 23
BsmI GAATGC 3 cut(s) 4, 340, 414
BsnI GGCC 2 cut(s) 324, 664
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 2 cut(s) 316, 1590
Bsp143I GATC 4 cut(s) 368, 381, 436, 1297
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 324, 664
BspCNI CTCAG 1 cut(s) 1399
BspHI TCATGA 2 cut(s) 657, 841
BspLI GGNNCC 1 cut(s) 1317
BspMAI CTGCAG 2 cut(s) 300, 817
BspMI ACCTGC 2 cut(s) 297, 1207
BspPI GGATC 2 cut(s) 363, 1292
BspT107I GGYRCC 1 cut(s) 1315
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 2 cut(s) 1184, 1395
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 444, 718
BssMI GATC 4 cut(s) 368, 381, 436, 1297
Bst2UI CCWGG 1 cut(s) 1425
Bst4CI ACNGT 7 cut(s) 117, 404, 445, 733, 1072, 1354, 1432
Bst6I CTCTTC 1 cut(s) 1484
BstAPI GCANNNNNTGC 1 cut(s) 821
BstC8I GCNNGC 4 cut(s) 291, 322, 611, 1041
BstDEI CTNAG 2 cut(s) 1103, 1407
BstDSI CCRYGG 2 cut(s) 444, 718
BstF5I GGATG 7 cut(s) 202, 229, 393, 1090, 1138, 1161, 1462
BstH2I RGCGCY 2 cut(s) 284, 1019
BstHHI GCGC 2 cut(s) 283, 1018
BstKTI GATC 4 cut(s) 371, 384, 439, 1300
BstMAI GTCTC 3 cut(s) 23, 520, 1033
BstMBI GATC 4 cut(s) 368, 381, 436, 1297
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 6 cut(s) 173, 295, 596, 821, 929, 938
BstNI CCWGG 1 cut(s) 1425
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 4 cut(s) 41, 664, 1423, 1498
BstSFI CTRYAG 3 cut(s) 296, 813, 924
BstV1I GCAGC 7 cut(s) 577, 808, 916, 1025, 1037, 1256, 1378
BstV2I GAAGAC 1 cut(s) 1182
Bsu36I CCTNAGG 1 cut(s) 1407
BsuRI GGCC 2 cut(s) 324, 664
BtgI CCRYGG 2 cut(s) 444, 718
BtsCI GGATG 7 cut(s) 202, 229, 393, 1090, 1138, 1161, 1462
BtsI GCAGTG 2 cut(s) 345, 810
BtsIMutI CAGTG 5 cut(s) 15, 345, 810, 1320, 1402
BveI ACCTGC 2 cut(s) 297, 1207
Cac8I GCNNGC 4 cut(s) 291, 322, 611, 1041
CaiI CAGNNNCTG 2 cut(s) 821, 1430
CciI TCATGA 2 cut(s) 657, 841
CfoI GCGC 2 cut(s) 283, 1018
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 2 cut(s) 5, 152
CsiI ACCWGGT 1 cut(s) 1423
Csp6I GTAC 7 cut(s) 70, 363, 533, 964, 1316, 1421, 1428
CviAII CATG 6 cut(s) 267, 551, 610, 658, 842, 1303
CviQI GTAC 7 cut(s) 70, 363, 533, 964, 1316, 1421, 1428
DdeI CTNAG 2 cut(s) 1103, 1407
DpnI GATC 4 cut(s) 370, 383, 438, 1299
DpnII GATC 4 cut(s) 368, 381, 436, 1297
DraI TTTAAA 1 cut(s) 1341
DraIII CACNNNGTG 1 cut(s) 1025
Eam1104I CTCTTC 1 cut(s) 1484
EarI CTCTTC 1 cut(s) 1484
Eco24I GRGCYC 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 520
Eco81I CCTNAGG 1 cut(s) 1407
EcoRII CCWGG 1 cut(s) 1423
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 6 cut(s) 270, 554, 613, 661, 845, 1306
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FatI CATG 6 cut(s) 266, 550, 609, 657, 841, 1302
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 7 cut(s) 591, 822, 930, 1014, 1051, 1245, 1392
FokI GGATG 7 cut(s) 209, 236, 380, 1097, 1145, 1168, 1469
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 7 cut(s) 591, 822, 930, 1014, 1051, 1245, 1392
FspBI CTAG 5 cut(s) 710, 938, 974, 1098, 1467
GlaI GCGC 2 cut(s) 282, 1017
GluI GCNGC 7 cut(s) 591, 822, 930, 1014, 1051, 1245, 1392
GsuI CTGGAG 1 cut(s) 1201
HaeII RGCGCY 2 cut(s) 284, 1019
HaeIII GGCC 2 cut(s) 324, 664
HapII CCGG 5 cut(s) 43, 73, 290, 665, 1499
HgaI GACGC 2 cut(s) 5, 152
HhaI GCGC 2 cut(s) 283, 1018
Hin1II CATG 6 cut(s) 270, 554, 613, 661, 845, 1306
Hin6I GCGC 2 cut(s) 281, 1016
HinP1I GCGC 2 cut(s) 281, 1016
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 9 cut(s) 65, 97, 137, 155, 706, 714, 1286, 1325, 1495
HpaII CCGG 5 cut(s) 43, 73, 290, 665, 1499
HphI GGTGA 5 cut(s) 31, 433, 785, 1213, 1514
Hpy166II GTNNAC 2 cut(s) 1435, 1505
Hpy188I TCNGA 6 cut(s) 142, 379, 523, 1007, 1067, 1546
Hpy188III TCNNGA 8 cut(s) 94, 419, 617, 631, 658, 842, 1273, 1329
Hpy8I GTNNAC 2 cut(s) 1435, 1505
HpyAV CCTTC 4 cut(s) 782, 1165, 1306, 1610
HpyCH4III ACNGT 7 cut(s) 117, 404, 445, 733, 1072, 1354, 1432
HpyCH4IV ACGT 2 cut(s) 753, 1239
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 295, 596, 821, 929, 938
HpyF3I CTNAG 2 cut(s) 1103, 1407
HpySE526I ACGT 2 cut(s) 753, 1239
Hsp92II CATG 6 cut(s) 270, 554, 613, 661, 845, 1306
HspAI GCGC 2 cut(s) 281, 1016
KpnI GGTACC 1 cut(s) 1319
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Kzo9I GATC 4 cut(s) 368, 381, 436, 1297
LmnI GCTCC 4 cut(s) 45, 954, 970, 1388
Lsp1109I GCAGC 7 cut(s) 577, 808, 916, 1025, 1037, 1256, 1378
LweI GCATC 4 cut(s) 402, 1068, 1121, 1447
MabI ACCWGGT 1 cut(s) 1423
MaeI CTAG 5 cut(s) 710, 938, 974, 1098, 1467
MaeII ACGT 2 cut(s) 753, 1239
MaeIII GTNAC 2 cut(s) 778, 1201
MalI GATC 4 cut(s) 370, 383, 438, 1299
MboI GATC 4 cut(s) 368, 381, 436, 1297
MboII GAAGA 6 cut(s) 458, 753, 1133, 1187, 1218, 1501
MhlI GDGCHC 2 cut(s) 316, 1590
MluCI AATT 4 cut(s) 646, 1137, 1621, 1630
MmeI TCCRAC 4 cut(s) 191, 237, 421, 985
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 9 cut(s) 243, 501, 888, 893, 1119, 1340, 1538, 1577, 1633
MslI CAYNNNNRTG 3 cut(s) 1467, 1554, 1569
MspA1I CMGCKG 1 cut(s) 929
MspI CCGG 5 cut(s) 43, 73, 290, 665, 1499
MspR9I CCNGG 4 cut(s) 43, 666, 1425, 1500
Mva1269I GAATGC 3 cut(s) 4, 340, 414
MvaI CCWGG 1 cut(s) 1425
MwoI GCNNNNNNNGC 6 cut(s) 173, 295, 596, 821, 929, 938
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 3 cut(s) 43, 666, 1500
NdeII GATC 4 cut(s) 368, 381, 436, 1297
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 6 cut(s) 270, 554, 613, 661, 845, 1306
NlaIV GGNNCC 1 cut(s) 1317
NmuCI GTSAC 2 cut(s) 778, 1201
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 613
OliI CACNNNNGTG 1 cut(s) 1554
PaeI GCATGC 1 cut(s) 613
PagI TCATGA 2 cut(s) 657, 841
PaqCI CACCTGC 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 3 cut(s) 4, 340, 414
PdiI GCCGGC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 9 cut(s) 65, 97, 137, 155, 706, 714, 1286, 1325, 1495
PkrI GCNGC 7 cut(s) 592, 823, 931, 1015, 1052, 1246, 1393
PshBI ATTAAT 1 cut(s) 501
PsiI TTATAA 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 1423
PspGI CCWGG 1 cut(s) 1423
PspN4I GGNNCC 1 cut(s) 1317
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 2 cut(s) 300, 817
PstNI CAGNNNCTG 2 cut(s) 821, 1430
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 7 cut(s) 71, 364, 534, 965, 1317, 1422, 1429
RsaNI GTAC 7 cut(s) 70, 363, 533, 964, 1316, 1421, 1428
RseI CAYNNNNRTG 3 cut(s) 1467, 1554, 1569
SaqAI TTAA 9 cut(s) 243, 501, 888, 893, 1119, 1340, 1538, 1577, 1633
SatI GCNGC 7 cut(s) 591, 822, 930, 1014, 1051, 1245, 1392
Sau3AI GATC 4 cut(s) 368, 381, 436, 1297
Sau96I GGNCC 1 cut(s) 323
ScaI AGTACT 1 cut(s) 364
ScrFI CCNGG 4 cut(s) 43, 666, 1425, 1500
SduI GDGCHC 2 cut(s) 316, 1590
SexAI ACCWGGT 1 cut(s) 1423
SfaNI GCATC 4 cut(s) 402, 1068, 1121, 1447
SfcI CTRYAG 3 cut(s) 296, 813, 924
SmiMI CAYNNNNRTG 3 cut(s) 1467, 1554, 1569
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 1466
SphI GCATGC 1 cut(s) 613
Sse9I AATT 4 cut(s) 646, 1137, 1621, 1630
SsiI CCGC 1 cut(s) 356
SspI AATATT 1 cut(s) 499
SspMI CTAG 5 cut(s) 710, 938, 974, 1098, 1467
StyD4I CCNGG 4 cut(s) 41, 664, 1423, 1498
TaaI ACNGT 7 cut(s) 117, 404, 445, 733, 1072, 1354, 1432
TaiI ACGT 2 cut(s) 756, 1242
TaqI TCGA 5 cut(s) 119, 158, 367, 555, 616
TasI AATT 4 cut(s) 646, 1137, 1621, 1630
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 9 cut(s) 65, 97, 137, 155, 706, 714, 1286, 1325, 1495
Tru1I TTAA 9 cut(s) 243, 501, 888, 893, 1119, 1340, 1538, 1577, 1633
Tru9I TTAA 9 cut(s) 243, 501, 888, 893, 1119, 1340, 1538, 1577, 1633
TscAI CASTG 5 cut(s) 15, 345, 817, 1327, 1402
TseFI GTSAC 2 cut(s) 778, 1201
TseI GCWGC 7 cut(s) 590, 821, 929, 1013, 1050, 1244, 1391
Tsp45I GTSAC 2 cut(s) 778, 1201
TspDTI ATGAA 4 cut(s) 255, 858, 1149, 1629
TspGWI ACGGA 3 cut(s) 361, 707, 941
TspRI CASTG 5 cut(s) 15, 345, 817, 1327, 1402
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 2 cut(s) 646, 1137
XceI RCATGY 1 cut(s) 613
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 5 cut(s) 710, 938, 974, 1098, 1467
ZrmI AGTACT 1 cut(s) 364
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.