Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005314.1

Orthogroup ID

OG0012096

Physical Location & Seq

Genomic Coordinates Reverse (-)

103767 .. 107501

Gene Structure 3735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005314.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

atggccaagcattcagtgaagcgtctgctctgcaattcacatttcacgcaaagcttgatgaagcgagaggaatcataccggaggttgataaatagcttcgtgaatcggtttcaatcgcaacggtctaaagcagacaaggtggattcagggtcactcaaggaatcaaatgttgccgttcatcctcatcaagcttctctgaggcttagaaaggatggcattggtagttatagtagtggggatgaagatttgagcgagaataaggagaaaaggttagagctttcatggcttcccaaagcgcttgagccagctctgcagttgtgcaggtgggctctgacaggcccaacagggaacggggtgggaaacaaacccccaccaagtactcgatctgtctcggagatcattgcaagcatccaacgcagtaagacaggcattcaagattggagtttgagtgatctcactgtgggtttatttcttatttatcttcgtcaagcgtctgtaaatccatttgaggatgttactggcattcaggtctcatcagatagattggtacatgaccttatttaccacgttgagttggcaaaaggttgttataaggacaatgctgcagctctcgcaaggaactgcatgcttcgagaaagcaatgtcttgaagtttgtcaaatattctagtgtcatgaggccgggttattatataggaattgatactcgtagaaaacttgtgattctaggaatccgtggaactcatactgtgtatgaccttattactgacgttgtttcttcaagtgacggtgaagtcactcttgaagggttttcaacccactttggcactgcagaagctgctcgttggtttcttactcacgaaatgggaaatataaggaagtgcttggagaagtatgagggatttaagttaaggcttgtgggtcattctcttggaggtgctacagctgctctactagcaataatgctccgtaaaaagtcatataaggagctagggtttagcccagagattgtttctgctgttggatatgcagcgccaccttgtgtctccaaagaacttgctgaaagctgctccagttatgtcagaactgttgtgatgcaggatgatattatacctagacttagtgtagcatctcttacgaggttgagaaatgaaattcttcaaactgattggatgagtgtgattgagaaggaagactggagaagtgtcatagatttggtgacaaatgcaaaacaggttgtatcttcggtgcaagatgttgcggcaaaacttgctgattatgcaaaattcaggagcaataaagattcccctgatgatccgatcataaagaaagcggctgctgcttccagagtccctttaaatgacaaaactgtaagagataatgctgttggtagtccaaatgctgccagtagagtgcctgaggagttattcgtaccaggtactgtttactatttaaagaggaatgtggatgctgatactagcgattattttacactttggaagaggaatccgggtgaacattttcaaaggattgtgctttcaagcaacttaatatcggaccataagtgtgatagccattattatgcattaagagatgtactcaaaggtttgccctcctccaatgatgaaggcaattctcttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

547

Amino Acids

60.91

Weight (kDa)

9.0

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42450
fragaria_vesca	FvH4_2g21920 FvH4_2g21920
malus_domestica	MD05G1200600.v1.1 MD10G1187200.v1.1
prunus_persica	Prupe.8G227200_v2.0.a1
pyrus_communis	pycom05g18740
rosa_chinensis	RchiOBHm_Chr6g0288821
rosa_laevigata	RLG00000012365
rosa_multiflora	Rmu_sc0005314.1_g000019
rosa_roxburghii	Rroxscaffold_7G00179870
rosa_rugosa	Rorug06G0198300 Rorug06G0198300 Rorug06G0198300
rosa_samantha	Rh6AG309600 Rh6BG315500 Rh6CG323000 Rh6DG308700
rosa_wichuraiana	Rw6G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AarI	CACCTGC	1 cut(s)	312
AasI	GACNNNNNNGTC	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	312
AciI	CCGC	2 cut(s)	1259, 1331
AclWI	GGATC	1 cut(s)	1307
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	1152, 1283
AdeI	CACNNNGTG	1 cut(s)	1040
AfaI	GTAC	5 cut(s)	379, 549, 1431, 1438, 1596
AfeI	AGCGCT	1 cut(s)	297
AgsI	TTSAA	9 cut(s)	113, 434, 649, 780, 803, 813, 1160, 1523, 1539
AjnI	CCWGG	1 cut(s)	1432
Alw26I	GTCTC	3 cut(s)	394, 535, 1048
AlwI	GGATC	1 cut(s)	1307
AlwNI	CAGNNNCTG	2 cut(s)	836, 1439
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	3 cut(s)	3, 337, 677
ApeKI	GCWGC	9 cut(s)	602, 605, 836, 944, 1028, 1065, 1334, 1337, 1400
ApoI	RAATTY	2 cut(s)	1152, 1283
Asp700I	GAANNNNTTC	2 cut(s)	1155, 1518
AspLEI	GCGC	2 cut(s)	298, 1033
AspS9I	GGNCC	2 cut(s)	338, 1555
AsuC2I	CCSGG	2 cut(s)	681, 1509
AsuHPI	GGTGA	3 cut(s)	800, 1228, 1523
AvaII	GGWCC	1 cut(s)	1555
AxyI	CCTNAGG	1 cut(s)	1416
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	1197
BbvI	GCAGC	9 cut(s)	589, 617, 823, 931, 1040, 1052, 1321, 1324, 1387
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	1434
BcnI	CCSGG	2 cut(s)	681, 1509
BcoDI	GTCTC	3 cut(s)	394, 535, 1048
BfaI	CTAG	6 cut(s)	666, 725, 953, 989, 1113, 1476
BfmI	CTRYAG	4 cut(s)	311, 603, 828, 939
BfoI	RGCGCY	2 cut(s)	299, 1034
BfuAI	ACCTGC	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	3 cut(s)	681, 1434, 1509
Bme18I	GGWCC	1 cut(s)	1555
BmgT120I	GGNCC	2 cut(s)	338, 1555
BmrFI	CCNGG	3 cut(s)	681, 1434, 1509
BmsI	GCATC	4 cut(s)	417, 1083, 1136, 1456
BpiI	GAAGAC	1 cut(s)	1197
BplI	GAGNNNNNCTC	2 cut(s)	1581, 1613
BpmI	CTGGAG	2 cut(s)	1054, 1216
BpuEI	CTTGAG	2 cut(s)	140, 320
BpuMI	CCSGG	2 cut(s)	681, 1509
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 433, 463, 977, 1007
Bse1I	ACTGG	4 cut(s)	523, 1071, 1199, 1404
Bse21I	CCTNAGG	1 cut(s)	1416
Bse3DI	GCAATG	2 cut(s)	399, 646
BseBI	CCWGG	1 cut(s)	1434
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	8 cut(s)	178, 217, 244, 408, 517, 1105, 1176, 1471
BseMI	GCAATG	2 cut(s)	399, 646
BseMII	CTCAG	2 cut(s)	188, 1407
BseNI	ACTGG	4 cut(s)	523, 1071, 1199, 1404
BseRI	GAGGAG	2 cut(s)	1433, 1603
BseXI	GCAGC	9 cut(s)	589, 617, 823, 931, 1040, 1052, 1321, 1324, 1387
BsgI	GTGCAG	1 cut(s)	340
BshFI	GGCC	3 cut(s)	5, 339, 679
BsiSI	CCGG	3 cut(s)	79, 680, 1508
BslFI	GGGAC	1 cut(s)	1334
BsmAI	GTCTC	3 cut(s)	394, 535, 1048
BsmFI	GGGAC	1 cut(s)	1334
BsmI	GAATGC	3 cut(s)	10, 429, 522
BsnI	GGCC	3 cut(s)	5, 339, 679
Bso31I	GGTCTC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	383, 396, 451, 1312, 1317
BspACI	CCGC	2 cut(s)	1259, 1331
BspANI	GGCC	3 cut(s)	5, 339, 679
BspCNI	CTCAG	2 cut(s)	189, 1408
BspHI	TCATGA	1 cut(s)	672
BspMAI	CTGCAG	3 cut(s)	315, 607, 832
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	1307
BspTNI	GGTCTC	1 cut(s)	535
BsrDI	GCAATG	2 cut(s)	399, 646
BsrI	ACTGG	4 cut(s)	523, 1071, 1199, 1404
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	5 cut(s)	383, 396, 451, 1312, 1317
Bst2UI	CCWGG	1 cut(s)	1434
Bst4CI	ACNGT	7 cut(s)	123, 460, 748, 788, 1087, 1369, 1441
Bst6I	CTCTTC	1 cut(s)	1493
BstAPI	GCANNNNNTGC	2 cut(s)	836, 1268
BstC8I	GCNNGC	3 cut(s)	306, 406, 626
BstDEI	CTNAG	4 cut(s)	197, 203, 1118, 1416
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	8 cut(s)	178, 217, 244, 408, 517, 1105, 1176, 1471
BstH2I	RGCGCY	2 cut(s)	299, 1034
BstHHI	GCGC	2 cut(s)	298, 1033
BstKTI	GATC	5 cut(s)	386, 399, 454, 1315, 1320
BstMAI	GTCTC	3 cut(s)	394, 535, 1048
BstMBI	GATC	5 cut(s)	383, 396, 451, 1312, 1317
BstNI	CCWGG	1 cut(s)	1434
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	3 cut(s)	679, 1432, 1507
BstSFI	CTRYAG	4 cut(s)	311, 603, 828, 939
BstV1I	GCAGC	9 cut(s)	589, 617, 823, 931, 1040, 1052, 1321, 1324, 1387
BstV2I	GAAGAC	1 cut(s)	1197
Bsu36I	CCTNAGG	1 cut(s)	1416
BsuRI	GGCC	3 cut(s)	5, 339, 679
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	8 cut(s)	178, 217, 244, 408, 517, 1105, 1176, 1471
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	3 cut(s)	21, 456, 825
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	306, 406, 626
CaiI	CAGNNNCTG	2 cut(s)	836, 1439
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	2 cut(s)	298, 1033
Cfr13I	GGNCC	2 cut(s)	338, 1555
CseI	GACGC	2 cut(s)	11, 480
CsiI	ACCWGGT	1 cut(s)	1432
Csp6I	GTAC	5 cut(s)	378, 548, 1430, 1437, 1595
CviAII	CATG	4 cut(s)	282, 551, 625, 673
CviQI	GTAC	5 cut(s)	378, 548, 1430, 1437, 1595
DdeI	CTNAG	4 cut(s)	197, 203, 1118, 1416
DpnI	GATC	5 cut(s)	385, 398, 453, 1314, 1319
DpnII	GATC	5 cut(s)	383, 396, 451, 1312, 1317
DraI	TTTAAA	2 cut(s)	1356, 1452
DraIII	CACNNNGTG	1 cut(s)	1040
DrdI	GACNNNNNNGTC	1 cut(s)	791
DseDI	GACNNNNNNGTC	1 cut(s)	791
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	1493
EarI	CTCTTC	1 cut(s)	1493
Eco24I	GRGCYC	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	1555
Eco47III	AGCGCT	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	1416
EcoRII	CCWGG	1 cut(s)	1432
EcoT22I	ATGCAT	1 cut(s)	1585
EcoT38I	GRGCYC	1 cut(s)	331
FaeI	CATG	4 cut(s)	285, 554, 628, 676
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	1 cut(s)	1334
FatI	CATG	4 cut(s)	281, 550, 624, 672
FokI	GGATG	8 cut(s)	165, 224, 251, 395, 524, 1112, 1183, 1478
FriOI	GRGCYC	1 cut(s)	331
FspBI	CTAG	6 cut(s)	666, 725, 953, 989, 1113, 1476
GlaI	GCGC	2 cut(s)	297, 1032
GsuI	CTGGAG	2 cut(s)	1054, 1216
HaeII	RGCGCY	2 cut(s)	299, 1034
HaeIII	GGCC	3 cut(s)	5, 339, 679
HapII	CCGG	3 cut(s)	79, 680, 1508
HgaI	GACGC	2 cut(s)	11, 480
HhaI	GCGC	2 cut(s)	298, 1033
Hin1II	CATG	4 cut(s)	285, 554, 628, 676
Hin6I	GCGC	2 cut(s)	296, 1031
HinP1I	GCGC	2 cut(s)	296, 1031
HindIII	AAGCTT	2 cut(s)	52, 189
HinfI	GANTC	9 cut(s)	71, 103, 143, 161, 721, 729, 1301, 1347, 1504
HpaII	CCGG	3 cut(s)	79, 680, 1508
HphI	GGTGA	3 cut(s)	800, 1228, 1523
Hpy166II	GTNNAC	2 cut(s)	1444, 1514
Hpy188I	TCNGA	7 cut(s)	198, 333, 394, 538, 1082, 1317, 1555
Hpy188III	TCNNGA	9 cut(s)	100, 434, 632, 646, 673, 800, 857, 1288, 1344
Hpy8I	GTNNAC	2 cut(s)	1444, 1514
HpyAV	CCTTC	3 cut(s)	797, 1180, 1619
HpyCH4III	ACNGT	7 cut(s)	123, 460, 748, 788, 1087, 1369, 1441
HpyCH4IV	ACGT	2 cut(s)	567, 768
HpyF3I	CTNAG	4 cut(s)	197, 203, 1118, 1416
HpySE526I	ACGT	2 cut(s)	567, 768
Hsp92II	CATG	4 cut(s)	285, 554, 628, 676
HspAI	GCGC	2 cut(s)	296, 1031
Kzo9I	GATC	5 cut(s)	383, 396, 451, 1312, 1317
LmnI	GCTCC	4 cut(s)	969, 985, 1073, 1290
Lsp1109I	GCAGC	9 cut(s)	589, 617, 823, 931, 1040, 1052, 1321, 1324, 1387
LweI	GCATC	4 cut(s)	417, 1083, 1136, 1456
MabI	ACCWGGT	1 cut(s)	1432
MaeI	CTAG	6 cut(s)	666, 725, 953, 989, 1113, 1476
MaeII	ACGT	2 cut(s)	567, 768
MaeIII	GTNAC	5 cut(s)	150, 514, 782, 793, 1216
MalI	GATC	5 cut(s)	385, 398, 453, 1314, 1319
MboI	GATC	5 cut(s)	383, 396, 451, 1312, 1317
MboII	GAAGA	7 cut(s)	254, 473, 768, 1148, 1202, 1233, 1510
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	34, 696, 1152, 1283, 1630, 1639
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1356
MmeI	TCCRAC	2 cut(s)	436, 1000
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1585
MroXI	GAANNNNTTC	2 cut(s)	1155, 1518
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	8 cut(s)	903, 908, 1355, 1451, 1547, 1586, 1638, 1642
MslI	CAYNNNNRTG	2 cut(s)	1563, 1578
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	3 cut(s)	79, 680, 1508
MspR9I	CCNGG	3 cut(s)	681, 1434, 1509
Mva1269I	GAATGC	3 cut(s)	10, 429, 522
MvaI	CCWGG	1 cut(s)	1434
NciI	CCSGG	2 cut(s)	681, 1509
NdeII	GATC	5 cut(s)	383, 396, 451, 1312, 1317
NlaIII	CATG	4 cut(s)	285, 554, 628, 676
NmuCI	GTSAC	4 cut(s)	150, 782, 793, 1216
NsiI	ATGCAT	1 cut(s)	1585
NspI	RCATGY	1 cut(s)	628
PacI	TTAATTAA	1 cut(s)	1642
PaeI	GCATGC	1 cut(s)	628
PagI	TCATGA	1 cut(s)	672
PaqCI	CACCTGC	1 cut(s)	312
PctI	GAATGC	3 cut(s)	10, 429, 522
PdmI	GAANNNNTTC	2 cut(s)	1155, 1518
PfeI	GAWTC	8 cut(s)	71, 103, 143, 161, 721, 729, 1301, 1504
PleI	GAGTC	1 cut(s)	1355
PpsI	GAGTC	1 cut(s)	1355
PsiI	TTATAA	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	1432
PspGI	CCWGG	1 cut(s)	1432
PspPI	GGNCC	2 cut(s)	338, 1555
PstI	CTGCAG	3 cut(s)	315, 607, 832
PstNI	CAGNNNCTG	2 cut(s)	836, 1439
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	5 cut(s)	379, 549, 1431, 1438, 1596
RsaNI	GTAC	5 cut(s)	378, 548, 1430, 1437, 1595
RseI	CAYNNNNRTG	2 cut(s)	1563, 1578
SaqAI	TTAA	8 cut(s)	903, 908, 1355, 1451, 1547, 1586, 1638, 1642
Sau3AI	GATC	5 cut(s)	383, 396, 451, 1312, 1317
Sau96I	GGNCC	2 cut(s)	338, 1555
ScaI	AGTACT	1 cut(s)	379
SchI	GAGTC	1 cut(s)	1356
ScrFI	CCNGG	3 cut(s)	681, 1434, 1509
SduI	GDGCHC	1 cut(s)	331
SexAI	ACCWGGT	1 cut(s)	1432
SfaNI	GCATC	4 cut(s)	417, 1083, 1136, 1456
SfcI	CTRYAG	4 cut(s)	311, 603, 828, 939
SinI	GGWCC	1 cut(s)	1555
SmiMI	CAYNNNNRTG	2 cut(s)	1563, 1578
SmlI	CTYRAG	2 cut(s)	155, 299
SmoI	CTYRAG	2 cut(s)	155, 299
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	6 cut(s)	34, 696, 1152, 1283, 1630, 1639
SsiI	CCGC	2 cut(s)	1259, 1331
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	6 cut(s)	666, 725, 953, 989, 1113, 1476
StyD4I	CCNGG	3 cut(s)	679, 1432, 1507
TaaI	ACNGT	7 cut(s)	123, 460, 748, 788, 1087, 1369, 1441
TaiI	ACGT	2 cut(s)	570, 771
TaqI	TCGA	2 cut(s)	382, 631
TasI	AATT	6 cut(s)	34, 696, 1152, 1283, 1630, 1639
TatI	WGTACW	2 cut(s)	377, 1594
TauI	GCSGC	2 cut(s)	1262, 1334
TfiI	GAWTC	8 cut(s)	71, 103, 143, 161, 721, 729, 1301, 1504
Tru1I	TTAA	8 cut(s)	903, 908, 1355, 1451, 1547, 1586, 1638, 1642
Tru9I	TTAA	8 cut(s)	903, 908, 1355, 1451, 1547, 1586, 1638, 1642
TscAI	CASTG	3 cut(s)	21, 463, 832
TseFI	GTSAC	4 cut(s)	150, 782, 793, 1216
TseI	GCWGC	9 cut(s)	602, 605, 836, 944, 1028, 1065, 1334, 1337, 1400
Tsp45I	GTSAC	4 cut(s)	150, 782, 793, 1216
TspDTI	ATGAA	6 cut(s)	74, 167, 255, 270, 1164, 1638
TspGWI	ACGGA	2 cut(s)	722, 956
TspRI	CASTG	3 cut(s)	21, 463, 832
VpaK11BI	GGWCC	1 cut(s)	1555
XapI	RAATTY	2 cut(s)	1152, 1283
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	2 cut(s)	1155, 1518
XspI	CTAG	6 cut(s)	666, 725, 953, 989, 1113, 1476
ZrmI	AGTACT	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	1585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.