Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012096

Physical Location & Seq

Genomic Coordinates Forward (+)

21573135 .. 21576167

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCTTCGTGAAAGCAATGTCTTGAAATTTGTCAAAGATTCCAGTGTCATGAGGCCTGGATATTATATAGGGATCGATCCTCGTAAAAAACTTGTGATTTTAGGAATCCGTGGTACTCATACTGTATATGACCTTATAACTGATGTTGTTTCTTCAAGCGATGATGAAGTCACGTTTGAGGGTTATTCAACGCACTTTGGCACTGCAGAAGCTGCTCGCTGGTTTCTTAGTCACGAGATGGGAAATATAAGGAAGTGCTTGGAGAAATATGAGGGATTTAAGTTAAGGCTGGTTGGTCATTCTCTCGGAGGTTCTACAGCTGCTTTACTTGCAATAATGCTCCGTAAAAAGTCAGTTAAGGAGCTGGGGTTCAACCCAGAAATTGTCTCTGCCGTGGGGTATGCAACACCGCCTTGTGTCTCCAAAGAACTTGCCGAAAACTGCTCCAGTTACGTCACAACTGTTGTGATGCAGGATGATATTATACCTAGGCTAAGTCCAGCATCTCTAACGAGGTTGAGGAGTGAAATTCTTAAAACTGATTGGATGAGTGTGATTGAGAAGGAAGATTGGAAAAGTGTCATAGATTTGGTTACAAATGCAAAGCAGGTTGTGTCTTCGGTGCAAGATGTTGCTCGGAAGCTTTCTGATTATGCAAAGTTTGGGAGCAGTAAACATTCTTCTGATGGTCCCATCATAAAGAAAATTCCTACTGCTCCCGGGGTCCCTTTAAATGACAGAGAAGTAACAGATAATGCTGGTGCTATTAAAAGTGGAGGAGCTGCCTGTAAAGTGCCTGAGGAATTATTTGTACCAGGTACCGTCTACTGCCTAAAGAGGAATGTGGATGCTCGTACCGGCAGCAGAGGCAGCAGAAGGGAGTATTTTACACTTTGGAAGAGGCATCCGGGTGAGCATTTTCAGAGGATTGTGCTGTCAAGCAACATAATTACTGACCACAAGTGTGTGAGCCATTACTATGCATTAAGAGATGTGCTCAAAGGTTTGCCTGCCTCCGATGATGAAGACAAATTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

347

Amino Acids

38.38

Weight (kDa)

8.84

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42450
fragaria_vesca	FvH4_2g21920 FvH4_2g21920
malus_domestica	MD05G1200600.v1.1 MD10G1187200.v1.1
prunus_persica	Prupe.8G227200_v2.0.a1
pyrus_communis	pycom05g18740
rosa_chinensis	RchiOBHm_Chr6g0288821
rosa_laevigata	RLG00000012365
rosa_multiflora	Rmu_sc0005314.1_g000019
rosa_roxburghii	Rroxscaffold_7G00179870
rosa_rugosa	Rorug06G0198300 Rorug06G0198300 Rorug06G0198300
rosa_samantha	Rh6AG309600 Rh6BG315500 Rh6CG323000 Rh6DG308700
rosa_wichuraiana	Rw6G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	598
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	818
AccI	GTMKAC	1 cut(s)	825
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	2 cut(s)	71, 80
AcsI	RAATTY	4 cut(s)	26, 528, 705, 1031
AfaI	GTAC	4 cut(s)	115, 813, 820, 856
AgsI	TTSAA	4 cut(s)	25, 156, 189, 373
AjnI	CCWGG	2 cut(s)	55, 814
AleI	CACNNNNGTG	1 cut(s)	963
AloI	GAACNNNNNNTCC	2 cut(s)	353, 385
AluBI	AGCT	5 cut(s)	212, 320, 364, 643, 782
AluI	AGCT	5 cut(s)	212, 320, 364, 643, 782
Alw21I	GWGCWC	1 cut(s)	999
Alw26I	GTCTC	2 cut(s)	391, 424
AlwI	GGATC	2 cut(s)	71, 80
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	5 cut(s)	212, 320, 782, 861, 870
ApoI	RAATTY	4 cut(s)	26, 528, 705, 1031
Asp718I	GGTACC	1 cut(s)	818
AspA2I	CCTAGG	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	689, 724
AsuC2I	CCSGG	3 cut(s)	720, 721, 909
AsuHPI	GGTGA	1 cut(s)	923
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	2 cut(s)	689, 724
AvrII	CCTAGG	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	798
BanI	GGYRCC	1 cut(s)	818
BarI	GAAGNNNNNNTAC	2 cut(s)	664, 696
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	609, 1032
Bbv12I	GWGCWC	1 cut(s)	999
BbvI	GCAGC	5 cut(s)	199, 307, 769, 873, 882
BccI	CCATC	3 cut(s)	232, 680, 701
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	2 cut(s)	57, 816
BcnI	CCSGG	3 cut(s)	720, 721, 909
BcoDI	GTCTC	2 cut(s)	391, 424
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	204, 315
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	5 cut(s)	213, 321, 783, 862, 871
BlnI	CCTAGG	1 cut(s)	488
BlsI	GCNGC	5 cut(s)	214, 322, 784, 863, 872
Bme1390I	CCNGG	5 cut(s)	57, 720, 721, 816, 909
Bme18I	GGWCC	2 cut(s)	689, 724
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	689, 724
BmiI	GGNNCC	4 cut(s)	691, 725, 726, 820
BmrFI	CCNGG	5 cut(s)	57, 720, 721, 816, 909
BmsI	GCATC	4 cut(s)	459, 512, 838, 913
BpiI	GAAGAC	2 cut(s)	609, 1032
BplI	GAGNNNNNCTC	2 cut(s)	981, 1013
BpmI	CTGGAG	1 cut(s)	430
BpuMI	CCSGG	3 cut(s)	720, 721, 909
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	109, 393, 488, 719, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	2 cut(s)	42, 447
Bse21I	CCTNAGG	1 cut(s)	798
Bse3DI	GCAATG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	57, 816
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	5 cut(s)	109, 393, 488, 719, 720
BseGI	GGATG	4 cut(s)	481, 552, 853, 904
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	2 cut(s)	42, 447
BseRI	GAGGAG	2 cut(s)	535, 792
BseXI	GCAGC	5 cut(s)	199, 307, 769, 873, 882
BseYI	CCCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	818
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	999
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	3 cut(s)	720, 858, 908
BslFI	GGGAC	2 cut(s)	675, 710
BsmAI	GTCTC	2 cut(s)	391, 424
BsmFI	GGGAC	2 cut(s)	675, 710
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	999
Bsp143I	GATC	2 cut(s)	72, 76
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	790
BspDI	ATCGAT	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	691, 725, 726, 820
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	71, 80
BspT107I	GGYRCC	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	857
BsrI	ACTGG	2 cut(s)	42, 447
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	5 cut(s)	109, 393, 488, 719, 720
BssMI	GATC	2 cut(s)	72, 76
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	57, 816
Bst4CI	ACNGT	3 cut(s)	124, 463, 823
Bst6I	CTCTTC	1 cut(s)	893
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	217, 1011
BstDEI	CTNAG	3 cut(s)	227, 494, 798
BstDSI	CCRYGG	2 cut(s)	109, 393
BstF5I	GGATG	4 cut(s)	481, 552, 853, 904
BstKTI	GATC	2 cut(s)	75, 79
BstMAI	GTCTC	2 cut(s)	391, 424
BstMBI	GATC	2 cut(s)	72, 76
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 329, 867, 870
BstNI	CCWGG	2 cut(s)	57, 816
BstSCI	CCNGG	5 cut(s)	55, 718, 719, 814, 907
BstSFI	CTRYAG	2 cut(s)	204, 315
BstV1I	GCAGC	5 cut(s)	199, 307, 769, 873, 882
BstV2I	GAAGAC	2 cut(s)	609, 1032
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	55
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	2 cut(s)	109, 393
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	481, 552, 853, 904
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	49, 201
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	217, 1011
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	2 cut(s)	689, 724
Cfr9I	CCCGGG	1 cut(s)	719
ClaI	ATCGAT	1 cut(s)	75
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	4 cut(s)	114, 812, 819, 855
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	9 cut(s)	55, 212, 289, 320, 364, 493, 643, 782, 972
CviKI_1	RGCY	9 cut(s)	55, 212, 289, 320, 364, 493, 643, 782, 972
CviQI	GTAC	4 cut(s)	114, 812, 819, 855
DdeI	CTNAG	3 cut(s)	227, 494, 798
DpnI	GATC	2 cut(s)	74, 78
DpnII	GATC	2 cut(s)	72, 76
DraI	TTTAAA	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	893
EarI	CTCTTC	1 cut(s)	893
Eco130I	CCWWGG	1 cut(s)	488
Eco147I	AGGCCT	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	689, 724
Eco81I	CCTNAGG	1 cut(s)	798
Eco88I	CYCGRG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRII	CCWGG	2 cut(s)	55, 814
EcoT14I	CCWWGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	985
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	1 cut(s)	52
FaqI	GGGAC	2 cut(s)	675, 710
FatI	CATG	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	5 cut(s)	213, 321, 783, 862, 871
FokI	GGATG	4 cut(s)	488, 559, 860, 891
Fsp4HI	GCNGC	5 cut(s)	213, 321, 783, 862, 871
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	5 cut(s)	213, 321, 783, 862, 871
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	3 cut(s)	720, 858, 908
Hin1II	CATG	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	2 cut(s)	38, 105
HpaII	CCGG	3 cut(s)	720, 858, 908
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	2 cut(s)	674, 826
Hpy188I	TCNGA	6 cut(s)	308, 639, 649, 685, 924, 1018
Hpy188III	TCNNGA	4 cut(s)	8, 22, 49, 233
Hpy8I	GTNNAC	2 cut(s)	674, 826
HpyAV	CCTTC	2 cut(s)	556, 870
HpyCH4III	ACNGT	3 cut(s)	124, 463, 823
HpyCH4IV	ACGT	2 cut(s)	173, 453
HpyCH4V	TGCA	8 cut(s)	206, 332, 404, 472, 602, 625, 656, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 329, 867, 870
HpyF3I	CTNAG	3 cut(s)	227, 494, 798
HpySE526I	ACGT	2 cut(s)	173, 453
Hsp92II	CATG	1 cut(s)	52
KflI	GGGWCCC	1 cut(s)	724
KpnI	GGTACC	1 cut(s)	822
Kzo9I	GATC	2 cut(s)	72, 76
LmnI	GCTCC	6 cut(s)	345, 361, 449, 666, 721, 779
Lsp1109I	GCAGC	5 cut(s)	199, 307, 769, 873, 882
LweI	GCATC	4 cut(s)	459, 512, 838, 913
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	173, 453
MaeIII	GTNAC	6 cut(s)	169, 230, 449, 454, 592, 745
MalI	GATC	2 cut(s)	74, 78
MboI	GATC	2 cut(s)	72, 76
MboII	GAAGA	6 cut(s)	144, 578, 609, 672, 910, 1037
MhlI	GDGCHC	1 cut(s)	999
MluCI	AATT	7 cut(s)	26, 381, 528, 705, 803, 948, 1031
Mph1103I	ATGCAT	1 cut(s)	985
MseI	TTAA	8 cut(s)	279, 284, 357, 534, 731, 768, 986, 1039
MslI	CAYNNNNRTG	3 cut(s)	909, 963, 978
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	3 cut(s)	720, 858, 908
MspR9I	CCNGG	5 cut(s)	57, 720, 721, 816, 909
MvaI	CCWGG	2 cut(s)	57, 816
MwoI	GCNNNNNNNGC	4 cut(s)	212, 329, 867, 870
NciI	CCSGG	3 cut(s)	720, 721, 909
NdeII	GATC	2 cut(s)	72, 76
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	4 cut(s)	691, 725, 726, 820
NmuCI	GTSAC	3 cut(s)	169, 230, 454
NsiI	ATGCAT	1 cut(s)	985
OliI	CACNNNNGTG	1 cut(s)	963
PagI	TCATGA	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	38, 105
PkrI	GCNGC	5 cut(s)	214, 322, 784, 863, 872
PpuMI	RGGWCCY	1 cut(s)	724
PsiI	TTATAA	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	724
Psp6I	CCWGG	2 cut(s)	55, 814
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	2 cut(s)	55, 814
PspN4I	GGNNCC	4 cut(s)	691, 725, 726, 820
PspPI	GGNCC	2 cut(s)	689, 724
PspPPI	RGGWCCY	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	4 cut(s)	115, 813, 820, 856
RsaNI	GTAC	4 cut(s)	114, 812, 819, 855
RseI	CAYNNNNRTG	3 cut(s)	909, 963, 978
SaqAI	TTAA	8 cut(s)	279, 284, 357, 534, 731, 768, 986, 1039
SatI	GCNGC	5 cut(s)	213, 321, 783, 862, 871
Sau3AI	GATC	2 cut(s)	72, 76
Sau96I	GGNCC	2 cut(s)	689, 724
ScrFI	CCNGG	5 cut(s)	57, 720, 721, 816, 909
SduI	GDGCHC	1 cut(s)	999
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	4 cut(s)	459, 512, 838, 913
SfcI	CTRYAG	2 cut(s)	204, 315
SinI	GGWCC	2 cut(s)	689, 724
SmaI	CCCGGG	1 cut(s)	721
SmiMI	CAYNNNNRTG	3 cut(s)	909, 963, 978
Sse9I	AATT	7 cut(s)	26, 381, 528, 705, 803, 948, 1031
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	1 cut(s)	489
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	5 cut(s)	55, 718, 719, 814, 907
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	124, 463, 823
TaiI	ACGT	2 cut(s)	176, 456
TaqI	TCGA	1 cut(s)	75
TasI	AATT	7 cut(s)	26, 381, 528, 705, 803, 948, 1031
TfiI	GAWTC	2 cut(s)	38, 105
Tru1I	TTAA	8 cut(s)	279, 284, 357, 534, 731, 768, 986, 1039
Tru9I	TTAA	8 cut(s)	279, 284, 357, 534, 731, 768, 986, 1039
TscAI	CASTG	2 cut(s)	49, 208
TseFI	GTSAC	3 cut(s)	169, 230, 454
TseI	GCWGC	5 cut(s)	212, 320, 782, 861, 870
Tsp45I	GTSAC	3 cut(s)	169, 230, 454
TspDTI	ATGAA	2 cut(s)	180, 1038
TspGWI	ACGGA	2 cut(s)	98, 332
TspMI	CCCGGG	1 cut(s)	719
TspRI	CASTG	2 cut(s)	49, 208
VpaK11BI	GGWCC	2 cut(s)	689, 724
XapI	RAATTY	4 cut(s)	26, 528, 705, 1031
XmaI	CCCGGG	1 cut(s)	719
XmaJI	CCTAGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	825
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.