Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012096

Physical Location & Seq

Genomic Coordinates Forward (+)

28156055 .. 28159210

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1187200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATTTTGTTTGGAGTTGTGAGTGAAGATTGTTCAGTTTTGAAAGTTGAAGGAAATGGAGTGGGAAACCAAACCCCACCCACTACTCGATCAGTCTCAGAGATCATTGCAAGCATCCAACGCAGTAAGATAGGAATTGAGGATTGGAGTTTGAGTGATCTCACCATTGGTTTGTTTCTCATTTATCTTCGTCAAGCGTCTGTAAATCCGTTTGAGGATGTTAATGGTGTCCAGGTCTCCTCAGATTCCATGGTGCAAGATCTCATCTACCACTCTGAGTTAGCAAAAGGTTCTTATAAGGATAATACTGCAGCTCTTGCAAGGAACACCATGCTTCGTGAAAGCAATGTCTTGAAATTTGTCAAAGATTCCAGTGTCATGAGGCCTGGATATTATATAGGGATAGATCCTTGTAAAAAACTTGTGATTTTAGGAATCCGTGGTACTCATACTGTATATGACCTTATAACTGATGTTGTTTCTTCTAGCGATGGTGAAGTCACATTTGAGGGTTATTCAACCCACTTTGGCACTACAGAAGCTGCTCGCTGGTTTCTTAGTCACGAGATGGGAAATATAAGGAAGTGCTTAGAGAAATGTGAGATTGTCTCTGCCGTGGGTTATGCAACGCCACCTTGTGTCTCCAGAGAACTTGCTGAAAGCTGCTCCAGTTATGTCACAACTGTTGTGATGCAGGTGGGAAGAGTGATTGAGAAGGAAGACTGGAGAAGTGTCATAGATTTGGTTACAAATGCAAAGCAGGTTGTGTCTTCCGTGCAAGATGTTGCTCGGAAGCTTTCTGATTACGCAAAGTTTGGGAGCAGTAAAAATTCTTCTGGTGGTCCCATCATAAAGAAAACTCCTACTGCTCTCGGGGTCCCTTTAAATGACAGAGAAGTAACAGATAACACTGTTGCTATTAAAAGTGGAGGAGCTGCCTGTAAAGTGCCTGAGGAGTTATTTGTACCAGGTACCGTTTACTACCTAAAGAGGAATGTGGACGCACATGCTGGCAGCAACAACGGCAGAAGAAGGGAGTATTTTATGCTTTGGAAGAGGCATCCGGGTGAGCATTTTCAGAGGATTGTGCTTTCAAGCAACATAATAACAGACCACAAGTGTGTGAGCCATTACTATGCGTTAAGAGATGTGCTCAAAGATTTTCCCGCCTCCGATACAACAACAACAAAGCATTTTCCCACTAAGTGGGGTCGGCTATATGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

410

Amino Acids

45.25

Weight (kDa)

7.59

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42450
fragaria_vesca	FvH4_2g21920 FvH4_2g21920
malus_domestica	MD05G1200600.v1.1 MD10G1187200.v1.1
prunus_persica	Prupe.8G227200_v2.0.a1
pyrus_communis	pycom05g18740
rosa_chinensis	RchiOBHm_Chr6g0288821
rosa_laevigata	RLG00000012365
rosa_multiflora	Rmu_sc0005314.1_g000019
rosa_roxburghii	Rroxscaffold_7G00179870
rosa_rugosa	Rorug06G0198300 Rorug06G0198300 Rorug06G0198300
rosa_samantha	Rh6AG309600 Rh6BG315500 Rh6CG323000 Rh6DG308700
rosa_wichuraiana	Rw6G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	297, 467
AarI	CACCTGC	1 cut(s)	685
Acc36I	ACCTGC	2 cut(s)	685, 751
Acc65I	GGTACC	1 cut(s)	971
AccB1I	GGYRCC	1 cut(s)	971
AccB7I	CCANNNNNTGG	1 cut(s)	1206
AciI	CCGC	1 cut(s)	1167
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	356, 829
AdeI	CACNNNGTG	2 cut(s)	638, 1206
AfaI	GTAC	3 cut(s)	445, 966, 973
AfiI	CCNNNNNNNGG	1 cut(s)	1206
AgsI	TTSAA	5 cut(s)	43, 50, 355, 519, 1095
AjnI	CCWGG	3 cut(s)	231, 385, 967
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AleI	CACNNNNGTG	1 cut(s)	1119
AluBI	AGCT	5 cut(s)	314, 542, 663, 796, 935
AluI	AGCT	5 cut(s)	314, 542, 663, 796, 935
Alw21I	GWGCWC	1 cut(s)	1155
Alw26I	GTCTC	4 cut(s)	100, 241, 613, 646
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	5 cut(s)	311, 542, 663, 935, 1014
ApoI	RAATTY	2 cut(s)	356, 829
Asp718I	GGTACC	1 cut(s)	971
AspS9I	GGNCC	2 cut(s)	842, 877
AsuC2I	CCSGG	1 cut(s)	1065
AsuHPI	GGTGA	3 cut(s)	154, 506, 1079
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	2 cut(s)	842, 877
AxyI	CCTNAGG	1 cut(s)	951
BanI	GGYRCC	1 cut(s)	971
BarI	GAAGNNNNNNTAC	2 cut(s)	817, 849
BauI	CACGAG	1 cut(s)	563
BbsI	GAAGAC	2 cut(s)	726, 762
Bbv12I	GWGCWC	1 cut(s)	1155
BbvI	GCAGC	5 cut(s)	323, 529, 650, 922, 1026
BccI	CCATC	3 cut(s)	485, 562, 854
BceAI	ACGGC	2 cut(s)	599, 1039
BciT130I	CCWGG	3 cut(s)	233, 387, 969
BcnI	CCSGG	1 cut(s)	1065
BcoDI	GTCTC	4 cut(s)	100, 241, 613, 646
BfaI	CTAG	2 cut(s)	486, 1228
BfmI	CTRYAG	2 cut(s)	309, 534
BfuAI	ACCTGC	2 cut(s)	685, 751
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	5 cut(s)	312, 543, 664, 936, 1015
BlsI	GCNGC	5 cut(s)	313, 544, 665, 937, 1016
Bme1390I	CCNGG	4 cut(s)	233, 387, 969, 1065
Bme18I	GGWCC	2 cut(s)	842, 877
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	2 cut(s)	842, 877
BmiI	GGNNCC	4 cut(s)	844, 878, 879, 973
BmrFI	CCNGG	4 cut(s)	233, 387, 969, 1065
BmsI	GCATC	3 cut(s)	123, 681, 1069
BpiI	GAAGAC	2 cut(s)	726, 762
BplI	GAGNNNNNCTC	4 cut(s)	593, 625, 1137, 1169
BpmI	CTGGAG	3 cut(s)	628, 652, 745
BpuMI	CCSGG	1 cut(s)	1065
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	249, 439, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	1206
Bse1I	ACTGG	3 cut(s)	372, 669, 728
Bse21I	CCTNAGG	1 cut(s)	951
Bse3DI	GCAATG	2 cut(s)	105, 352
BseBI	CCWGG	3 cut(s)	233, 387, 969
BseDI	CCNNGG	3 cut(s)	249, 439, 615
BseGI	GGATG	3 cut(s)	114, 223, 1060
BseLI	CCNNNNNNNGG	1 cut(s)	1206
BseMI	GCAATG	2 cut(s)	105, 352
BseMII	CTCAG	4 cut(s)	111, 255, 267, 942
BseNI	ACTGG	3 cut(s)	372, 669, 728
BseRI	GAGGAG	3 cut(s)	229, 945, 968
BseXI	GCAGC	5 cut(s)	323, 529, 650, 922, 1026
BshFI	GGCC	1 cut(s)	385
BshNI	GGYRCC	1 cut(s)	971
BsiHKAI	GWGCWC	1 cut(s)	1155
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	1 cut(s)	1064
BslFI	GGGAC	2 cut(s)	828, 863
BslI	CCNNNNNNNGG	1 cut(s)	1206
BsmAI	GTCTC	4 cut(s)	100, 241, 613, 646
BsmFI	GGGAC	2 cut(s)	828, 863
BsnI	GGCC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	1155
Bsp143I	GATC	5 cut(s)	89, 102, 157, 259, 406
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	1167
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	4 cut(s)	110, 254, 268, 943
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	844, 878, 879, 973
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	2 cut(s)	685, 751
BspPI	GGATC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	105, 352
BsrI	ACTGG	3 cut(s)	372, 669, 728
BssECI	CCNNGG	3 cut(s)	249, 439, 615
BssMI	GATC	5 cut(s)	89, 102, 157, 259, 406
BssSI	CACGAG	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	563
Bst2UI	CCWGG	3 cut(s)	233, 387, 969
Bst4CI	ACNGT	4 cut(s)	454, 685, 913, 976
Bst6I	CTCTTC	2 cut(s)	697, 1049
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	112, 547, 1012
BstDEI	CTNAG	7 cut(s)	97, 241, 276, 557, 589, 951, 1203
BstDSI	CCRYGG	3 cut(s)	249, 439, 615
BstF5I	GGATG	3 cut(s)	114, 223, 1060
BstKTI	GATC	5 cut(s)	92, 105, 160, 262, 409
BstMAI	GTCTC	4 cut(s)	100, 241, 613, 646
BstMBI	GATC	5 cut(s)	89, 102, 157, 259, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 317, 1023
BstNI	CCWGG	3 cut(s)	233, 387, 969
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	4 cut(s)	231, 385, 967, 1063
BstSFI	CTRYAG	2 cut(s)	309, 534
BstV1I	GCAGC	5 cut(s)	323, 529, 650, 922, 1026
BstV2I	GAAGAC	2 cut(s)	726, 762
BstX2I	RGATCY	2 cut(s)	259, 406
BstYI	RGATCY	2 cut(s)	259, 406
Bsu36I	CCTNAGG	1 cut(s)	951
BsuRI	GGCC	1 cut(s)	385
BtgI	CCRYGG	3 cut(s)	249, 439, 615
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	114, 223, 1060
BtsIMutI	CAGTG	2 cut(s)	379, 909
BveI	ACCTGC	2 cut(s)	685, 751
Cac8I	GCNNGC	3 cut(s)	112, 547, 1012
CaiI	CAGNNNCTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	842, 877
CseI	GACGC	2 cut(s)	186, 1010
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	3 cut(s)	444, 965, 972
CviAII	CATG	4 cut(s)	250, 331, 379, 1007
CviJI	RGCY	8 cut(s)	314, 385, 542, 663, 796, 935, 1128, 1216
CviKI_1	RGCY	8 cut(s)	314, 385, 542, 663, 796, 935, 1128, 1216
CviQI	GTAC	3 cut(s)	444, 965, 972
DdeI	CTNAG	7 cut(s)	97, 241, 276, 557, 589, 951, 1203
DpnI	GATC	5 cut(s)	91, 104, 159, 261, 408
DpnII	GATC	5 cut(s)	89, 102, 157, 259, 406
DraI	TTTAAA	1 cut(s)	885
DraIII	CACNNNGTG	2 cut(s)	638, 1206
Eam1104I	CTCTTC	2 cut(s)	697, 1049
EarI	CTCTTC	2 cut(s)	697, 1049
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	842, 877
Eco81I	CCTNAGG	1 cut(s)	951
Eco88I	CYCGRG	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	877
EcoRII	CCWGG	3 cut(s)	231, 385, 967
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	253, 334, 382, 1010
FaqI	GGGAC	2 cut(s)	828, 863
FatI	CATG	4 cut(s)	249, 330, 378, 1006
FauI	CCCGC	1 cut(s)	1174
Fnu4HI	GCNGC	5 cut(s)	312, 543, 664, 936, 1015
FokI	GGATG	3 cut(s)	101, 230, 1047
Fsp4HI	GCNGC	5 cut(s)	312, 543, 664, 936, 1015
FspBI	CTAG	2 cut(s)	486, 1228
GluI	GCNGC	5 cut(s)	312, 543, 664, 936, 1015
GsuI	CTGGAG	3 cut(s)	628, 652, 745
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	1064
HgaI	GACGC	2 cut(s)	186, 1010
Hin1II	CATG	4 cut(s)	253, 334, 382, 1010
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	4 cut(s)	245, 368, 435, 1223
HpaII	CCGG	1 cut(s)	1064
HphI	GGTGA	3 cut(s)	154, 506, 1079
Hpy166II	GTNNAC	2 cut(s)	979, 1000
Hpy188I	TCNGA	7 cut(s)	100, 244, 277, 792, 802, 1080, 1174
Hpy188III	TCNNGA	5 cut(s)	338, 352, 379, 563, 645
Hpy8I	GTNNAC	2 cut(s)	979, 1000
HpyAV	CCTTC	3 cut(s)	44, 709, 1026
HpyCH4III	ACNGT	4 cut(s)	454, 685, 913, 976
HpyCH4V	TGCA	8 cut(s)	110, 256, 311, 320, 626, 694, 755, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 317, 1023
HpyF3I	CTNAG	7 cut(s)	97, 241, 276, 557, 589, 951, 1203
Hsp92II	CATG	4 cut(s)	253, 334, 382, 1010
KflI	GGGWCCC	1 cut(s)	877
KpnI	GGTACC	1 cut(s)	975
Kzo9I	GATC	5 cut(s)	89, 102, 157, 259, 406
LmnI	GCTCC	3 cut(s)	671, 819, 932
Lsp1109I	GCAGC	5 cut(s)	323, 529, 650, 922, 1026
LweI	GCATC	3 cut(s)	123, 681, 1069
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	2 cut(s)	486, 1228
MaeIII	GTNAC	5 cut(s)	499, 560, 676, 745, 898
MalI	GATC	5 cut(s)	91, 104, 159, 261, 408
MboI	GATC	5 cut(s)	89, 102, 157, 259, 406
MboII	GAAGA	9 cut(s)	38, 179, 474, 714, 731, 762, 825, 1041, 1066
MflI	RGATCY	2 cut(s)	259, 406
MhlI	GDGCHC	1 cut(s)	1155
MluCI	AATT	3 cut(s)	135, 356, 829
MmeI	TCCRAC	1 cut(s)	142
MseI	TTAA	4 cut(s)	222, 884, 921, 1142
MslI	CAYNNNNRTG	3 cut(s)	1065, 1119, 1134
MspI	CCGG	1 cut(s)	1064
MspR9I	CCNGG	4 cut(s)	233, 387, 969, 1065
MvaI	CCWGG	3 cut(s)	233, 387, 969
MwoI	GCNNNNNNNGC	3 cut(s)	120, 317, 1023
NciI	CCSGG	1 cut(s)	1065
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	5 cut(s)	89, 102, 157, 259, 406
NlaIII	CATG	4 cut(s)	253, 334, 382, 1010
NlaIV	GGNNCC	4 cut(s)	844, 878, 879, 973
NmuCI	GTSAC	3 cut(s)	499, 560, 676
NspI	RCATGY	1 cut(s)	1010
OliI	CACNNNNGTG	1 cut(s)	1119
PagI	TCATGA	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	385
PfeI	GAWTC	4 cut(s)	245, 368, 435, 1223
PflMI	CCANNNNNTGG	1 cut(s)	1206
PkrI	GCNGC	5 cut(s)	313, 544, 665, 937, 1016
PpuMI	RGGWCCY	1 cut(s)	877
PsiI	TTATAA	2 cut(s)	297, 467
Psp5II	RGGWCCY	1 cut(s)	877
Psp6I	CCWGG	3 cut(s)	231, 385, 967
PspGI	CCWGG	3 cut(s)	231, 385, 967
PspN4I	GGNNCC	4 cut(s)	844, 878, 879, 973
PspPI	GGNCC	2 cut(s)	842, 877
PspPPI	RGGWCCY	1 cut(s)	877
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	259, 406
RsaI	GTAC	3 cut(s)	445, 966, 973
RsaNI	GTAC	3 cut(s)	444, 965, 972
RseI	CAYNNNNRTG	3 cut(s)	1065, 1119, 1134
SaqAI	TTAA	4 cut(s)	222, 884, 921, 1142
SatI	GCNGC	5 cut(s)	312, 543, 664, 936, 1015
Sau3AI	GATC	5 cut(s)	89, 102, 157, 259, 406
Sau96I	GGNCC	2 cut(s)	842, 877
ScrFI	CCNGG	4 cut(s)	233, 387, 969, 1065
SduI	GDGCHC	1 cut(s)	1155
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	3 cut(s)	123, 681, 1069
SfcI	CTRYAG	2 cut(s)	309, 534
SinI	GGWCC	2 cut(s)	842, 877
SmiMI	CAYNNNNRTG	3 cut(s)	1065, 1119, 1134
Sse9I	AATT	3 cut(s)	135, 356, 829
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	1167
SspMI	CTAG	2 cut(s)	486, 1228
StuI	AGGCCT	1 cut(s)	385
StyD4I	CCNGG	4 cut(s)	231, 385, 967, 1063
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	4 cut(s)	454, 685, 913, 976
TaqI	TCGA	1 cut(s)	88
TasI	AATT	3 cut(s)	135, 356, 829
TfiI	GAWTC	4 cut(s)	245, 368, 435, 1223
Tru1I	TTAA	4 cut(s)	222, 884, 921, 1142
Tru9I	TTAA	4 cut(s)	222, 884, 921, 1142
TscAI	CASTG	2 cut(s)	379, 916
TseFI	GTSAC	3 cut(s)	499, 560, 676
TseI	GCWGC	5 cut(s)	311, 542, 663, 935, 1014
Tsp45I	GTSAC	3 cut(s)	499, 560, 676
TspGWI	ACGGA	3 cut(s)	198, 428, 763
TspRI	CASTG	2 cut(s)	379, 916
Van91I	CCANNNNNTGG	1 cut(s)	1206
VpaK11BI	GGWCC	2 cut(s)	842, 877
XapI	RAATTY	2 cut(s)	356, 829
XceI	RCATGY	1 cut(s)	1010
XspI	CTAG	2 cut(s)	486, 1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.