Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012096

Physical Location & Seq

Genomic Coordinates Forward (+)

50834341 .. 50838334

Gene Structure 3994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAAATGGCCAAGCATTCAGTGAAGCGTCTGCTCTGCAATTCACATTTCACGCAAAGCTTGATGAAGCGAGAGGAATCATACCGGAGGCTGATAAATAGCTTCGTGAATCGGTTTCAATCGCAACGGTCGAAAGCGGACAAGGTGGATTCAGAGTCACTCAAGGAATCAAATGTTGCTGTTCATCCTCATCAAGCTTCTCTGAGGCTTAGAAAGGATGGCATTGGTAGTTATAGTAGTGGGGATGAAGATTTGAGCGAGAATAAAGAGAAAAGGTTAGAGCTTTCATGGCTTCCCAAAGCGCTTGAGCCAGCTCTGCAGTTGTGCAGGTGGGCTCTGACAGGCCCAACAGGGAACGGGGTGGGAAACAAACCCCCACCAAGTACTCGATCTGTCTCGGAGATCATTGCAAGCATCCAACGCAGTAAGACAGGCATTCAAGACTGGAGTTTGAGTGATCTCACTGTGGGTTTATTTCTTATTTATCTTCGTCAAGCGTCTGTAAATCCATTTGAGGATGTTACTGGCATTCAGGTCTCATCAGATAGATTGGTACATGACCTTATTTACCACGTTGAGTTGGCAAAAGGTTGTTATAAGGACAATGCTGCAGCTCTGGCAAGGAACTGCATGCTTCGAGAAAGCAATGTCTTGAAGTTTGTCAAATATTCTAGTGTCATGAGGCCGGGTTATTATATAGGGATTGATACTCGTAGAAAACTTGTGATTCTAGGAATCCGTGGAACTCATACTGTGTATGACCTTATTACTGACGTTGTTTCTTCAAGTGACGGTGAAGTCACTCTTGAAGGGTTTTCAACCCACTTTGGCACTGCAGAAGCTGCTCGTTGGTTTCTTACTCACGAAATGGGAAATATAAGGAAGTGCTTGGAGAAGTATGAGGGATTTAAGTTAAGGCTTGTGGGTCATTCTCTTGGAGGTGCTACAGCTGCTCTACTAGCAATAATGCTCCGTAAAAAGTCGTCTAAGGAGCTAGGGTTTAGCCCAGAGATTGTTTCTGCTGTCGGATATGCAGCGCCACCTTGTGTCTCCAAAGAACTTGCTGAAAGCTGCTCCAGTTATGTCAGAACTGTTGTGATGCAGGATGATATTATACCTAGACTTAGTGTAGCATCTCTTACGAGGTTGAGGAATGAAATTCTTCAAACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

391

Amino Acids

43.53

Weight (kDa)

9.1

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	244 - 377	9.2e-27	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42450
fragaria_vesca	FvH4_2g21920 FvH4_2g21920
malus_domestica	MD05G1200600.v1.1 MD10G1187200.v1.1
prunus_persica	Prupe.8G227200_v2.0.a1
pyrus_communis	pycom05g18740
rosa_chinensis	RchiOBHm_Chr6g0288821
rosa_laevigata	RLG00000012365
rosa_multiflora	Rmu_sc0005314.1_g000019
rosa_roxburghii	Rroxscaffold_7G00179870
rosa_rugosa	Rorug06G0198300 Rorug06G0198300 Rorug06G0198300
rosa_samantha	Rh6AG309600 Rh6BG315500 Rh6CG323000 Rh6DG308700
rosa_wichuraiana	Rw6G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AarI	CACCTGC	1 cut(s)	318
AasI	GACNNNNNNGTC	1 cut(s)	797
Acc36I	ACCTGC	1 cut(s)	318
AciI	CCGC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	1158
AdeI	CACNNNGTG	1 cut(s)	1046
AfaI	GTAC	2 cut(s)	385, 555
AfeI	AGCGCT	1 cut(s)	303
AgsI	TTSAA	7 cut(s)	119, 440, 655, 786, 809, 819, 1166
Alw26I	GTCTC	3 cut(s)	400, 541, 1054
AlwNI	CAGNNNCTG	1 cut(s)	842
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	3 cut(s)	9, 343, 683
ApeKI	GCWGC	6 cut(s)	608, 611, 842, 950, 1034, 1071
ApoI	RAATTY	1 cut(s)	1158
Asp700I	GAANNNNTTC	1 cut(s)	1161
AspLEI	GCGC	2 cut(s)	304, 1039
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	337
BbvI	GCAGC	6 cut(s)	595, 623, 829, 937, 1046, 1058
BccI	CCATC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	687
BcoDI	GTCTC	3 cut(s)	400, 541, 1054
BfaI	CTAG	5 cut(s)	672, 731, 959, 995, 1119
BfmI	CTRYAG	4 cut(s)	317, 609, 834, 945
BfoI	RGCGCY	2 cut(s)	305, 1040
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	6 cut(s)	609, 612, 843, 951, 1035, 1072
BlsI	GCNGC	6 cut(s)	610, 613, 844, 952, 1036, 1073
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	687
BmgT120I	GGNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	3 cut(s)	423, 1089, 1142
BpmI	CTGGAG	2 cut(s)	466, 1060
BpuEI	CTTGAG	2 cut(s)	146, 326
BpuMI	CCSGG	1 cut(s)	687
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	739
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	4 cut(s)	439, 469, 983, 1013
Bse1I	ACTGG	3 cut(s)	449, 529, 1077
Bse3DI	GCAATG	2 cut(s)	405, 652
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	6 cut(s)	184, 223, 250, 414, 523, 1111
BseMI	GCAATG	2 cut(s)	405, 652
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	3 cut(s)	449, 529, 1077
BseXI	GCAGC	6 cut(s)	595, 623, 829, 937, 1046, 1058
BsgI	GTGCAG	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	11, 345, 685
BsiEI	CGRYCG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	85, 686
BsmAI	GTCTC	3 cut(s)	400, 541, 1054
BsmI	GAATGC	3 cut(s)	16, 435, 528
BsnI	GGCC	3 cut(s)	11, 345, 685
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	389, 402, 457
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	3 cut(s)	11, 345, 685
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	678
BspMAI	CTGCAG	3 cut(s)	321, 613, 838
BspMI	ACCTGC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	2 cut(s)	405, 652
BsrI	ACTGG	3 cut(s)	449, 529, 1077
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	3 cut(s)	389, 402, 457
Bst4CI	ACNGT	5 cut(s)	129, 466, 754, 794, 1093
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstC8I	GCNNGC	3 cut(s)	312, 412, 632
BstDEI	CTNAG	4 cut(s)	203, 209, 987, 1124
BstDSI	CCRYGG	1 cut(s)	739
BstF5I	GGATG	6 cut(s)	184, 223, 250, 414, 523, 1111
BstH2I	RGCGCY	2 cut(s)	305, 1040
BstHHI	GCGC	2 cut(s)	304, 1039
BstKTI	GATC	3 cut(s)	392, 405, 460
BstMAI	GTCTC	3 cut(s)	400, 541, 1054
BstMBI	GATC	3 cut(s)	389, 402, 457
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	7 cut(s)	289, 316, 420, 617, 842, 950, 959
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	4 cut(s)	317, 609, 834, 945
BstV1I	GCAGC	6 cut(s)	595, 623, 829, 937, 1046, 1058
BsuRI	GGCC	3 cut(s)	11, 345, 685
BtgI	CCRYGG	1 cut(s)	739
BtsCI	GGATG	6 cut(s)	184, 223, 250, 414, 523, 1111
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	3 cut(s)	27, 462, 831
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	312, 412, 632
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	678
CfoI	GCGC	2 cut(s)	304, 1039
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	2 cut(s)	17, 486
Csp6I	GTAC	2 cut(s)	384, 554
CviAII	CATG	4 cut(s)	288, 557, 631, 679
CviQI	GTAC	2 cut(s)	384, 554
DdeI	CTNAG	4 cut(s)	203, 209, 987, 1124
DpnI	GATC	3 cut(s)	391, 404, 459
DpnII	GATC	3 cut(s)	389, 402, 457
DraIII	CACNNNGTG	1 cut(s)	1046
DrdI	GACNNNNNNGTC	1 cut(s)	797
DseDI	GACNNNNNNGTC	1 cut(s)	797
EaeI	YGGCCR	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	541
Eco47III	AGCGCT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	337
FaeI	CATG	4 cut(s)	291, 560, 634, 682
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FatI	CATG	4 cut(s)	287, 556, 630, 678
Fnu4HI	GCNGC	6 cut(s)	609, 612, 843, 951, 1035, 1072
FokI	GGATG	6 cut(s)	171, 230, 257, 401, 530, 1118
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	6 cut(s)	609, 612, 843, 951, 1035, 1072
FspBI	CTAG	5 cut(s)	672, 731, 959, 995, 1119
GlaI	GCGC	2 cut(s)	303, 1038
GluI	GCNGC	6 cut(s)	609, 612, 843, 951, 1035, 1072
GsuI	CTGGAG	2 cut(s)	466, 1060
HaeII	RGCGCY	2 cut(s)	305, 1040
HaeIII	GGCC	3 cut(s)	11, 345, 685
HapII	CCGG	2 cut(s)	85, 686
HgaI	GACGC	2 cut(s)	17, 486
HhaI	GCGC	2 cut(s)	304, 1039
Hin1II	CATG	4 cut(s)	291, 560, 634, 682
Hin6I	GCGC	2 cut(s)	302, 1037
HinP1I	GCGC	2 cut(s)	302, 1037
HindIII	AAGCTT	2 cut(s)	58, 195
HinfI	GANTC	7 cut(s)	77, 109, 149, 155, 167, 727, 735
HpaII	CCGG	2 cut(s)	85, 686
HphI	GGTGA	1 cut(s)	806
Hpy188I	TCNGA	7 cut(s)	154, 204, 339, 400, 544, 1028, 1088
Hpy188III	TCNNGA	7 cut(s)	106, 440, 638, 652, 679, 806, 863
HpyAV	CCTTC	1 cut(s)	803
HpyCH4III	ACNGT	5 cut(s)	129, 466, 754, 794, 1093
HpyCH4IV	ACGT	2 cut(s)	573, 774
HpyCH4V	TGCA	9 cut(s)	39, 319, 327, 410, 611, 630, 836, 1034, 1102
HpyF10VI	GCNNNNNNNGC	7 cut(s)	289, 316, 420, 617, 842, 950, 959
HpyF3I	CTNAG	4 cut(s)	203, 209, 987, 1124
HpySE526I	ACGT	2 cut(s)	573, 774
Hsp92II	CATG	4 cut(s)	291, 560, 634, 682
HspAI	GCGC	2 cut(s)	302, 1037
Kzo9I	GATC	3 cut(s)	389, 402, 457
LmnI	GCTCC	3 cut(s)	975, 991, 1079
Lsp1109I	GCAGC	6 cut(s)	595, 623, 829, 937, 1046, 1058
LweI	GCATC	3 cut(s)	423, 1089, 1142
MaeI	CTAG	5 cut(s)	672, 731, 959, 995, 1119
MaeII	ACGT	2 cut(s)	573, 774
MaeIII	GTNAC	4 cut(s)	156, 520, 788, 799
MalI	GATC	3 cut(s)	391, 404, 459
MboI	GATC	3 cut(s)	389, 402, 457
MboII	GAAGA	4 cut(s)	260, 479, 774, 1154
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	2 cut(s)	40, 1158
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	442, 1006
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	1161
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	2 cut(s)	909, 914
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	2 cut(s)	85, 686
MspR9I	CCNGG	1 cut(s)	687
Mva1269I	GAATGC	3 cut(s)	16, 435, 528
MwoI	GCNNNNNNNGC	7 cut(s)	289, 316, 420, 617, 842, 950, 959
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	3 cut(s)	389, 402, 457
NlaIII	CATG	4 cut(s)	291, 560, 634, 682
NmuCI	GTSAC	3 cut(s)	156, 788, 799
NspI	RCATGY	1 cut(s)	634
PaeI	GCATGC	1 cut(s)	634
PagI	TCATGA	1 cut(s)	678
PaqCI	CACCTGC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	3 cut(s)	16, 435, 528
PdmI	GAANNNNTTC	1 cut(s)	1161
PfeI	GAWTC	6 cut(s)	77, 109, 149, 167, 727, 735
PkrI	GCNGC	6 cut(s)	610, 613, 844, 952, 1036, 1073
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	3 cut(s)	321, 613, 838
PstNI	CAGNNNCTG	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	2 cut(s)	385, 555
RsaNI	GTAC	2 cut(s)	384, 554
SaqAI	TTAA	2 cut(s)	909, 914
SatI	GCNGC	6 cut(s)	609, 612, 843, 951, 1035, 1072
Sau3AI	GATC	3 cut(s)	389, 402, 457
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	423, 1089, 1142
SfcI	CTRYAG	4 cut(s)	317, 609, 834, 945
SmlI	CTYRAG	2 cut(s)	161, 305
SmoI	CTYRAG	2 cut(s)	161, 305
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	2 cut(s)	40, 1158
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	5 cut(s)	672, 731, 959, 995, 1119
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	5 cut(s)	129, 466, 754, 794, 1093
TaiI	ACGT	2 cut(s)	576, 777
TaqI	TCGA	3 cut(s)	131, 388, 637
TasI	AATT	2 cut(s)	40, 1158
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	6 cut(s)	77, 109, 149, 167, 727, 735
Tru1I	TTAA	2 cut(s)	909, 914
Tru9I	TTAA	2 cut(s)	909, 914
TscAI	CASTG	3 cut(s)	27, 469, 838
TseFI	GTSAC	3 cut(s)	156, 788, 799
TseI	GCWGC	6 cut(s)	608, 611, 842, 950, 1034, 1071
Tsp45I	GTSAC	3 cut(s)	156, 788, 799
TspDTI	ATGAA	5 cut(s)	80, 173, 261, 276, 1170
TspGWI	ACGGA	2 cut(s)	728, 962
TspRI	CASTG	3 cut(s)	27, 469, 838
XapI	RAATTY	1 cut(s)	1158
XceI	RCATGY	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	1161
XspI	CTAG	5 cut(s)	672, 731, 959, 995, 1119
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.