Rroxscaffold_7G00179870

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
19340114 .. 19345818
5705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179870.1

Sequence Viewer

Length: 1650 bp
ATGGAAATGGCCAAGCATTCAGTGAAGCGTCTCCTCTGCAATTCACATTTCACGCAAAGCTTGATGAAGCGAGAGGAATCGTACCGGAGGTTGATATATAGCTTCGTGAATCGGTTTCAATCGCAACGGTCGAAAGCAGACAAGGTGGATTCAGAGGCGCTCAAGGAATCAAATGTTGCTGTTCATCCTCATCAAGCTTCTCTGAGGCTTAGAAAGGATGGCATTGGTAGTTATAGTAGTGGGGATGATGATTTGAGCGAGAATAAGGAGAAAAGATTAGAGCTTTCATGGCTTCCCAAAGCGCTTGAGCCAGCTCTGCAGTTGTGCAGGTGGGCTCTGACAGGCCCAACAGGGAACGGGGTGGGAAACAAACCCCCACCAAGTACTCGATCCGTCTCGGAGATCATTGCAAGCATCCAACGCAGTAAGACAGGAATTCAAGATTGGAGTTTGAGTGATCTCACTGTGGGTTTATTTCTTATTTATCTTCGTCAAGCGTCTGTAAATCCATTTGAGGATGTTACTGGCATTCGGGTCTCATCAGATAGATTGGTACATGACCTTATTTACCACGTTGAGTTGGCAAAAGGTTGTTATAAGGACAATGCTGCAGCTCTCGCAAGGAACTGCATGCTTCGAGAAAGCAATGTCTTGAAGTTTGTCAAATATTCTAGTGTCATGAGGCCGGGTTATTATATAGGGATTGATCCTCGTAGAAAACTTGTGATTCTAGGAATCCGTGGAACTCATACTGTGTATGACCTTATTACTGACGTTGTTTCTTCAAGTGATGGTGAAGTCACTCTTGAAGGGTTTTCAACCCACTTTGGCACTGCAGAAGCTGCTCGTTGGTTTCTTACTCACGAAATGGGAAATATAAGGAAGTGCTTGGAGAAGTATGAGGGATATAAGTTAAGGCTTGTGGGTCATTCTCTTGGAGGTGCTACAGCTGCTCTACTAGCAATAATGCTCCGTAAAAAGTCGTATAAGGAGCTTGGGTTTAGCCCAGAGATTGTTTCTGCTGTCGGATATGCAGCGCCACCTTGTGTCTCCAAAGAACTTGCTGAAAGCTGCTCCAGTTATGTCAGAACTGTTGTGATGCAGGATGATATTATACCTAGACTTAGTGTAGCATCTCTTACGAGGTTGAGGAATGAAATTCTTCAAACTGATTGGATGAGTGTGATTGAGAAGGAAGACTGGAGAAGTGTCATAGATTTGGTGACAAATGCAAAACAGGTTGTATCTTCGGTGCAAGATGTTGCAGCAAAACTTGCTGATTATGCAAAATTCAGGAGCAATAAAAATTCCCCTGATGATCCCATGATAAAGAAGGCGGCTGCTGCTTCCAGAGTCCCTTTAAATGACAAAACTGTAAGAGATAATGCTGTTGGTAGTCCAAATGCTGCCAGTAGAGTGCCTGAGGAGTTATTCGTACCAGGTACTGTTTACTATTTAAAGAGGAATGTGGATGCTGATACTAGCGATTATTTTACACTTTGGAAGAGGAATCCGGGTGAACATTTTCAAAGGATTGTGCTTTCAAGCAACTTAATATCGGACCACAAGTGTGATAGCCATTATTATGCATTAAGAGATGTACTCAAAGGTTTGCCCTCCTCCAATGATGAAGGCAATTCTCTTAATTAA

Protein Analysis

549

Amino Acids

61.32

Weight (kDa)

8.99

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 244 - 377 5.2e-27 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AarI CACCTGC 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 318
AciI CCGC 1 cut(s) 1337
AclWI GGATC 3 cut(s) 384, 701, 1313
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 4 cut(s) 435, 1158, 1289, 1306
AdeI CACNNNGTG 1 cut(s) 1046
AfaI GTAC 6 cut(s) 83, 385, 555, 1437, 1444, 1602
AfeI AGCGCT 1 cut(s) 303
AgsI TTSAA 9 cut(s) 119, 440, 655, 786, 809, 819, 1166, 1529, 1545
AjnI CCWGG 1 cut(s) 1438
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AleI CACNNNNGTG 1 cut(s) 1569
Alw26I GTCTC 4 cut(s) 35, 400, 541, 1054
AlwI GGATC 3 cut(s) 384, 701, 1313
AlwNI CAGNNNCTG 2 cut(s) 842, 1445
Aor51HI AGCGCT 1 cut(s) 303
AoxI GGCC 3 cut(s) 9, 343, 683
ApoI RAATTY 4 cut(s) 435, 1158, 1289, 1306
Asp700I GAANNNNTTC 2 cut(s) 1161, 1524
AspLEI GCGC 3 cut(s) 160, 304, 1039
AspS9I GGNCC 2 cut(s) 344, 1561
AsuC2I CCSGG 2 cut(s) 687, 1515
AsuHPI GGTGA 3 cut(s) 806, 1234, 1529
AvaII GGWCC 1 cut(s) 1561
AxyI CCTNAGG 1 cut(s) 1422
BalI TGGCCA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 1203
BccI CCATC 2 cut(s) 212, 785
BciT130I CCWGG 1 cut(s) 1440
BcnI CCSGG 2 cut(s) 687, 1515
BcoDI GTCTC 4 cut(s) 35, 400, 541, 1054
BfaI CTAG 5 cut(s) 672, 731, 959, 1119, 1482
BfmI CTRYAG 4 cut(s) 317, 609, 834, 945
BfoI RGCGCY 3 cut(s) 161, 305, 1040
BfuAI ACCTGC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 385
Bme1390I CCNGG 3 cut(s) 687, 1440, 1515
Bme18I GGWCC 1 cut(s) 1561
BmgT120I GGNCC 2 cut(s) 344, 1561
BmrFI CCNGG 3 cut(s) 687, 1440, 1515
BmsI GCATC 4 cut(s) 423, 1089, 1142, 1462
BpiI GAAGAC 1 cut(s) 1203
BplI GAGNNNNNCTC 2 cut(s) 1587, 1619
BpmI CTGGAG 2 cut(s) 1060, 1222
BpuEI CTTGAG 2 cut(s) 146, 326
BpuMI CCSGG 2 cut(s) 687, 1515
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 739
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 4 cut(s) 439, 469, 983, 1013
Bse1I ACTGG 4 cut(s) 529, 1077, 1205, 1410
Bse21I CCTNAGG 1 cut(s) 1422
Bse3DI GCAATG 2 cut(s) 405, 652
BseBI CCWGG 1 cut(s) 1440
BseDI CCNNGG 1 cut(s) 739
BseGI GGATG 8 cut(s) 184, 223, 250, 414, 523, 1111, 1182, 1477
BseMI GCAATG 2 cut(s) 405, 652
BseMII CTCAG 2 cut(s) 194, 1413
BseNI ACTGG 4 cut(s) 529, 1077, 1205, 1410
BseRI GAGGAG 3 cut(s) 23, 1439, 1609
BsgI GTGCAG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 3 cut(s) 11, 345, 685
BsiEI CGRYCG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 85, 686, 1514
BslFI GGGAC 1 cut(s) 1340
BsmAI GTCTC 4 cut(s) 35, 400, 541, 1054
BsmBI CGTCTC 2 cut(s) 35, 400
BsmFI GGGAC 1 cut(s) 1340
BsmI GAATGC 2 cut(s) 16, 528
BsnI GGCC 3 cut(s) 11, 345, 685
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 5 cut(s) 389, 402, 457, 706, 1318
BspACI CCGC 1 cut(s) 1337
BspANI GGCC 3 cut(s) 11, 345, 685
BspCNI CTCAG 2 cut(s) 195, 1414
BspHI TCATGA 1 cut(s) 678
BspMAI CTGCAG 3 cut(s) 321, 613, 838
BspMI ACCTGC 1 cut(s) 318
BspPI GGATC 3 cut(s) 384, 701, 1313
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 405, 652
BsrI ACTGG 4 cut(s) 529, 1077, 1205, 1410
BssECI CCNNGG 1 cut(s) 739
BssMI GATC 5 cut(s) 389, 402, 457, 706, 1318
Bst2UI CCWGG 1 cut(s) 1440
Bst4CI ACNGT 6 cut(s) 129, 466, 754, 1093, 1375, 1447
Bst6I CTCTTC 1 cut(s) 1499
BstAPI GCANNNNNTGC 2 cut(s) 842, 1274
BstC8I GCNNGC 3 cut(s) 312, 412, 632
BstDEI CTNAG 4 cut(s) 203, 209, 1124, 1422
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 8 cut(s) 184, 223, 250, 414, 523, 1111, 1182, 1477
BstH2I RGCGCY 3 cut(s) 161, 305, 1040
BstHHI GCGC 3 cut(s) 160, 304, 1039
BstKTI GATC 5 cut(s) 392, 405, 460, 709, 1321
BstMAI GTCTC 4 cut(s) 35, 400, 541, 1054
BstMBI GATC 5 cut(s) 389, 402, 457, 706, 1318
BstMCI CGRYCG 1 cut(s) 131
BstNI CCWGG 1 cut(s) 1440
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 685, 1438, 1513
BstSFI CTRYAG 4 cut(s) 317, 609, 834, 945
BstV2I GAAGAC 1 cut(s) 1203
Bsu36I CCTNAGG 1 cut(s) 1422
BsuRI GGCC 3 cut(s) 11, 345, 685
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 8 cut(s) 184, 223, 250, 414, 523, 1111, 1182, 1477
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 3 cut(s) 27, 462, 831
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 3 cut(s) 312, 412, 632
CaiI CAGNNNCTG 2 cut(s) 842, 1445
CciI TCATGA 1 cut(s) 678
CfoI GCGC 3 cut(s) 160, 304, 1039
Cfr13I GGNCC 2 cut(s) 344, 1561
CseI GACGC 2 cut(s) 17, 486
CsiI ACCWGGT 1 cut(s) 1438
Csp6I GTAC 6 cut(s) 82, 384, 554, 1436, 1443, 1601
CviAII CATG 5 cut(s) 288, 557, 631, 679, 1324
CviQI GTAC 6 cut(s) 82, 384, 554, 1436, 1443, 1601
DdeI CTNAG 4 cut(s) 203, 209, 1124, 1422
DpnI GATC 5 cut(s) 391, 404, 459, 708, 1320
DpnII GATC 5 cut(s) 389, 402, 457, 706, 1318
DraI TTTAAA 2 cut(s) 1362, 1458
DraIII CACNNNGTG 1 cut(s) 1046
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 1499
EarI CTCTTC 1 cut(s) 1499
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 1561
Eco47III AGCGCT 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 1422
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 1438
EcoT22I ATGCAT 1 cut(s) 1591
EcoT38I GRGCYC 1 cut(s) 337
Esp3I CGTCTC 2 cut(s) 35, 400
FaeI CATG 5 cut(s) 291, 560, 634, 682, 1327
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 1 cut(s) 1340
FatI CATG 5 cut(s) 287, 556, 630, 678, 1323
FokI GGATG 8 cut(s) 171, 230, 257, 401, 530, 1118, 1189, 1484
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 5 cut(s) 672, 731, 959, 1119, 1482
GlaI GCGC 3 cut(s) 159, 303, 1038
GsuI CTGGAG 2 cut(s) 1060, 1222
HaeII RGCGCY 3 cut(s) 161, 305, 1040
HaeIII GGCC 3 cut(s) 11, 345, 685
HapII CCGG 3 cut(s) 85, 686, 1514
HgaI GACGC 2 cut(s) 17, 486
HhaI GCGC 3 cut(s) 160, 304, 1039
Hin1II CATG 5 cut(s) 291, 560, 634, 682, 1327
Hin6I GCGC 3 cut(s) 158, 302, 1037
HinP1I GCGC 3 cut(s) 158, 302, 1037
HindIII AAGCTT 2 cut(s) 58, 195
HinfI GANTC 8 cut(s) 77, 109, 149, 167, 727, 735, 1353, 1510
HpaII CCGG 3 cut(s) 85, 686, 1514
HphI GGTGA 3 cut(s) 806, 1234, 1529
Hpy166II GTNNAC 2 cut(s) 1450, 1520
Hpy188I TCNGA 8 cut(s) 154, 204, 339, 400, 544, 1028, 1088, 1561
Hpy188III TCNNGA 9 cut(s) 106, 440, 638, 652, 679, 806, 863, 1294, 1350
Hpy8I GTNNAC 2 cut(s) 1450, 1520
HpyAV CCTTC 4 cut(s) 803, 1186, 1327, 1625
HpyCH4III ACNGT 6 cut(s) 129, 466, 754, 1093, 1375, 1447
HpyCH4IV ACGT 2 cut(s) 573, 774
HpyF3I CTNAG 4 cut(s) 203, 209, 1124, 1422
HpySE526I ACGT 2 cut(s) 573, 774
Hsp92II CATG 5 cut(s) 291, 560, 634, 682, 1327
HspAI GCGC 3 cut(s) 158, 302, 1037
Kzo9I GATC 5 cut(s) 389, 402, 457, 706, 1318
LmnI GCTCC 4 cut(s) 975, 991, 1079, 1296
LweI GCATC 4 cut(s) 423, 1089, 1142, 1462
MabI ACCWGGT 1 cut(s) 1438
MaeI CTAG 5 cut(s) 672, 731, 959, 1119, 1482
MaeII ACGT 2 cut(s) 573, 774
MaeIII GTNAC 3 cut(s) 520, 799, 1222
MalI GATC 5 cut(s) 391, 404, 459, 708, 1320
MboI GATC 5 cut(s) 389, 402, 457, 706, 1318
MboII GAAGA 6 cut(s) 479, 774, 1154, 1208, 1239, 1516
MhlI GDGCHC 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 7 cut(s) 40, 435, 1158, 1289, 1306, 1636, 1645
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 1362
MmeI TCCRAC 2 cut(s) 442, 1006
Mox20I TGGCCA 1 cut(s) 11
Mph1103I ATGCAT 1 cut(s) 1591
MroXI GAANNNNTTC 2 cut(s) 1161, 1524
MscI TGGCCA 1 cut(s) 11
MseI TTAA 7 cut(s) 914, 1361, 1457, 1553, 1592, 1644, 1648
MslI CAYNNNNRTG 2 cut(s) 1569, 1584
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 3 cut(s) 85, 686, 1514
MspR9I CCNGG 3 cut(s) 687, 1440, 1515
Mva1269I GAATGC 2 cut(s) 16, 528
MvaI CCWGG 1 cut(s) 1440
NciI CCSGG 2 cut(s) 687, 1515
NdeII GATC 5 cut(s) 389, 402, 457, 706, 1318
NlaIII CATG 5 cut(s) 291, 560, 634, 682, 1327
NmuCI GTSAC 2 cut(s) 799, 1222
NsiI ATGCAT 1 cut(s) 1591
NspI RCATGY 1 cut(s) 634
OliI CACNNNNGTG 1 cut(s) 1569
PacI TTAATTAA 1 cut(s) 1648
PaeI GCATGC 1 cut(s) 634
PagI TCATGA 1 cut(s) 678
PaqCI CACCTGC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 2 cut(s) 16, 528
PdmI GAANNNNTTC 2 cut(s) 1161, 1524
PfeI GAWTC 7 cut(s) 77, 109, 149, 167, 727, 735, 1510
PleI GAGTC 1 cut(s) 1361
PpsI GAGTC 1 cut(s) 1361
PsiI TTATAA 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 1438
PspGI CCWGG 1 cut(s) 1438
PspPI GGNCC 2 cut(s) 344, 1561
PstI CTGCAG 3 cut(s) 321, 613, 838
PstNI CAGNNNCTG 2 cut(s) 842, 1445
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 6 cut(s) 83, 385, 555, 1437, 1444, 1602
RsaNI GTAC 6 cut(s) 82, 384, 554, 1436, 1443, 1601
RseI CAYNNNNRTG 2 cut(s) 1569, 1584
SaqAI TTAA 7 cut(s) 914, 1361, 1457, 1553, 1592, 1644, 1648
Sau3AI GATC 5 cut(s) 389, 402, 457, 706, 1318
Sau96I GGNCC 2 cut(s) 344, 1561
ScaI AGTACT 1 cut(s) 385
SchI GAGTC 1 cut(s) 1362
ScrFI CCNGG 3 cut(s) 687, 1440, 1515
SduI GDGCHC 1 cut(s) 337
SexAI ACCWGGT 1 cut(s) 1438
SfaNI GCATC 4 cut(s) 423, 1089, 1142, 1462
SfcI CTRYAG 4 cut(s) 317, 609, 834, 945
SinI GGWCC 1 cut(s) 1561
SmiMI CAYNNNNRTG 2 cut(s) 1569, 1584
SmlI CTYRAG 2 cut(s) 161, 305
SmoI CTYRAG 2 cut(s) 161, 305
SphI GCATGC 1 cut(s) 634
Sse9I AATT 7 cut(s) 40, 435, 1158, 1289, 1306, 1636, 1645
SsiI CCGC 1 cut(s) 1337
SspI AATATT 1 cut(s) 668
SspMI CTAG 5 cut(s) 672, 731, 959, 1119, 1482
StyD4I CCNGG 3 cut(s) 685, 1438, 1513
TaaI ACNGT 6 cut(s) 129, 466, 754, 1093, 1375, 1447
TaiI ACGT 2 cut(s) 576, 777
TaqI TCGA 3 cut(s) 131, 388, 637
TasI AATT 7 cut(s) 40, 435, 1158, 1289, 1306, 1636, 1645
TatI WGTACW 2 cut(s) 383, 1600
TauI GCSGC 1 cut(s) 1340
TfiI GAWTC 7 cut(s) 77, 109, 149, 167, 727, 735, 1510
Tru1I TTAA 7 cut(s) 914, 1361, 1457, 1553, 1592, 1644, 1648
Tru9I TTAA 7 cut(s) 914, 1361, 1457, 1553, 1592, 1644, 1648
TscAI CASTG 3 cut(s) 27, 469, 838
TseFI GTSAC 2 cut(s) 799, 1222
Tsp45I GTSAC 2 cut(s) 799, 1222
TspDTI ATGAA 5 cut(s) 80, 173, 276, 1170, 1644
TspGWI ACGGA 3 cut(s) 382, 728, 962
TspRI CASTG 3 cut(s) 27, 469, 838
VpaK11BI GGWCC 1 cut(s) 1561
XapI RAATTY 4 cut(s) 435, 1158, 1289, 1306
XceI RCATGY 1 cut(s) 634
XmnI GAANNNNTTC 2 cut(s) 1161, 1524
XspI CTAG 5 cut(s) 672, 731, 959, 1119, 1482
ZrmI AGTACT 1 cut(s) 385
Zsp2I ATGCAT 1 cut(s) 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.