Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012578

Physical Location & Seq

Genomic Coordinates Reverse (-)

18492087 .. 18494103

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22540.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGTTAGACCTCGCTCTTCAACCACCAACCGCCACCAACTTCCTCACTCAACTCCCCTCTCTCTCCCCAACCACCACCCAAAACCACTTGTCCTTCGCGCGGCGTCGTTTCACATTTAAATGCGCCGTGGAGTACAGCCGTGACCACTACAGCAGCAGTCTCCAAGTCCCGGTGGCCCACCCTAGACCCGCGGAGGTCCAGTGGAAGAAGGAGCTCTGTAACACGGTCCAGCTCATCGGCGTCGTCGGGCTTCCCGTCGAGATTAAGCACCTCCCCTCCGGTAAAGTCCTCGCCTGGACCCGCCTCGCCGTCAAGAAATCCGCCACCGACACCTCTTGGATTAATTTGACATTTTGGGATGATCTAGCACATGTTGCGTTTCAGCATTTAGAGAAAGGCAACCAGATATATGTTTCGGGAAGACTGATTTCGGATGCTGTCGAAACCAGTGAGGGGAAACAGCAAACCTACTATAAGGTTGTTGTTCAGCAGCTGAATTTTGTCGAGAAGAGCTCCCCGTCAGTGAATGGACAGGACTCGGATTCCTTTACACCAGGCAGAAGTTCTAGCCACAGCTTTACAAAGCACACGGAAACCACACAAGAATTGTGGCAAGCATTCTTTGCTAATCCAGGAGAGTGGTGGGACAATAGGAAGACCAAGAGGAATTCAAAATATCCAGATTTCAAACACAGAGACACTGGAGAGGCCTTGTGGATTGAAGGCCGGAACAATCCACCATGGGTGAAGTCCCAGCTTGCTATACTAGATACTAGAATGGGTACCGCTAATGATCAAGACAATAAGACGCATTCAAACCTATTTACTGATGATAATTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

283

Amino Acids

32.1

Weight (kDa)

8.44

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSB	PF00436	75 - 161	2.3e-14	Single-strand binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22540 FvH4_2g22540
malus_domestica	MD05G1206000.v1.1 MD10G1193100.v1.1
prunus_persica	Prupe.8G232500_v2.0.a1
pyrus_communis	pycom05g19220 pycom10g16660
rosa_chinensis	RchiOBHm_Chr6g0289591
rosa_laevigata	RLG00000012290
rosa_multiflora	Rmu_sc0001527.1_g000063 Rmu_sc0010363.1_g000003
rosa_roxburghii	Rroxscaffold_7G00177830
rosa_rugosa	Rorug06G0204900 Rorug06G0205000
rosa_samantha	Rh6AG316500 Rh6BG322900 Rh6CG329400 Rh6DG314900
rosa_wichuraiana	Rw6G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	785
AccII	CGCG	3 cut(s)	101, 103, 194
AciI	CCGC	7 cut(s)	33, 103, 192, 194, 304, 324, 789
AcsI	RAATTY	2 cut(s)	499, 670
AcyI	GRCGYC	2 cut(s)	106, 243
AfaI	GTAC	2 cut(s)	137, 787
AfiI	CCNNNNNNNGG	3 cut(s)	102, 172, 456
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	5 cut(s)	23, 675, 691, 725, 819
AjnI	CCWGG	3 cut(s)	296, 556, 634
AluBI	AGCT	6 cut(s)	217, 235, 496, 516, 579, 760
AluI	AGCT	6 cut(s)	217, 235, 496, 516, 579, 760
Alw21I	GWGCWC	2 cut(s)	219, 518
Alw26I	GTCTC	2 cut(s)	167, 693
AlwNI	CAGNNNCTG	1 cut(s)	496
AoxI	GGCC	3 cut(s)	177, 711, 727
ApeKI	GCWGC	2 cut(s)	156, 493
ApoI	RAATTY	2 cut(s)	499, 670
AseI	ATTAAT	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	785
AspLEI	GCGC	2 cut(s)	103, 128
AspS9I	GGNCC	4 cut(s)	178, 199, 229, 300
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	760
AvaII	GGWCC	3 cut(s)	199, 229, 300
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	2 cut(s)	219, 518
BbsI	GAAGAC	2 cut(s)	430, 665
Bbv12I	GWGCWC	2 cut(s)	219, 518
BbvI	GCAGC	2 cut(s)	168, 505
BceAI	ACGGC	3 cut(s)	113, 126, 296
BciT130I	CCWGG	3 cut(s)	298, 558, 636
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	167, 693
BfaI	CTAG	5 cut(s)	186, 368, 570, 770, 777
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	3 cut(s)	104, 157, 494
BlsI	GCNGC	3 cut(s)	105, 158, 495
Bme1390I	CCNGG	4 cut(s)	173, 298, 558, 636
Bme18I	GGWCC	3 cut(s)	199, 229, 300
BmgT120I	GGNCC	4 cut(s)	178, 199, 229, 300
BmiI	GGNNCC	2 cut(s)	302, 787
BmrFI	CCNGG	4 cut(s)	173, 298, 558, 636
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	2 cut(s)	430, 665
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
BpmI	CTGGAG	1 cut(s)	726
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	2 cut(s)	106, 243
BsaJI	CCNNGG	3 cut(s)	129, 192, 743
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 172, 456
Bse1I	ACTGG	3 cut(s)	202, 450, 709
BseBI	CCWGG	3 cut(s)	298, 558, 636
BseDI	CCNNGG	3 cut(s)	129, 192, 743
BseGI	GGATG	2 cut(s)	367, 442
BseLI	CCNNNNNNNGG	3 cut(s)	102, 172, 456
BseNI	ACTGG	3 cut(s)	202, 450, 709
BseXI	GCAGC	2 cut(s)	168, 505
BseYI	CCCAGC	1 cut(s)	756
Bsh1236I	CGCG	3 cut(s)	101, 103, 194
BshFI	GGCC	3 cut(s)	179, 713, 729
BshNI	GGYRCC	1 cut(s)	785
BsiHKAI	GWGCWC	2 cut(s)	219, 518
BsiSI	CCGG	3 cut(s)	173, 282, 730
BslFI	GGGAC	3 cut(s)	155, 662, 739
BslI	CCNNNNNNNGG	3 cut(s)	102, 172, 456
BsmAI	GTCTC	2 cut(s)	167, 693
BsmFI	GGGAC	3 cut(s)	155, 662, 739
BsmI	GAATGC	2 cut(s)	620, 814
BsnI	GGCC	3 cut(s)	179, 713, 729
Bsp1286I	GDGCHC	2 cut(s)	219, 518
Bsp143I	GATC	2 cut(s)	364, 796
Bsp19I	CCATGG	1 cut(s)	743
BspACI	CCGC	7 cut(s)	33, 103, 192, 194, 304, 324, 789
BspANI	GGCC	3 cut(s)	179, 713, 729
BspFNI	CGCG	3 cut(s)	101, 103, 194
BspLI	GGNNCC	2 cut(s)	302, 787
BspQI	GCTCTTC	2 cut(s)	24, 506
BspT107I	GGYRCC	1 cut(s)	785
BsrI	ACTGG	3 cut(s)	202, 450, 709
BssECI	CCNNGG	3 cut(s)	129, 192, 743
BssMI	GATC	2 cut(s)	364, 796
BssNI	GRCGYC	2 cut(s)	106, 243
BssT1I	CCWWGG	1 cut(s)	743
Bst2UI	CCWGG	3 cut(s)	298, 558, 636
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	24, 506
BstACI	GRCGYC	2 cut(s)	106, 243
BstAPI	GCANNNNNTGC	2 cut(s)	377, 626
BstC8I	GCNNGC	2 cut(s)	618, 762
BstDSI	CCRYGG	3 cut(s)	129, 192, 743
BstF5I	GGATG	2 cut(s)	367, 442
BstFNI	CGCG	3 cut(s)	101, 103, 194
BstHHI	GCGC	2 cut(s)	103, 128
BstKTI	GATC	2 cut(s)	367, 799
BstMAI	GTCTC	2 cut(s)	167, 693
BstMBI	GATC	2 cut(s)	364, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 626
BstNI	CCWGG	3 cut(s)	298, 558, 636
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	4 cut(s)	171, 296, 556, 634
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	3 cut(s)	101, 103, 194
BstV1I	GCAGC	2 cut(s)	168, 505
BstV2I	GAAGAC	2 cut(s)	430, 665
BstXI	CCANNNNNNTGG	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	179, 713, 729
BtgI	CCRYGG	3 cut(s)	129, 192, 743
BtsCI	GGATG	2 cut(s)	367, 442
BtsIMutI	CAGTG	4 cut(s)	209, 457, 531, 702
Cac8I	GCNNGC	2 cut(s)	618, 762
CaiI	CAGNNNCTG	1 cut(s)	496
CfoI	GCGC	2 cut(s)	103, 128
Cfr13I	GGNCC	4 cut(s)	178, 199, 229, 300
Cfr42I	CCGCGG	1 cut(s)	195
CseI	GACGC	3 cut(s)	95, 232, 820
Csp6I	GTAC	2 cut(s)	136, 786
CspCI	CAANNNNNGTGG	2 cut(s)	593, 628
CviAII	CATG	2 cut(s)	374, 744
CviQI	GTAC	2 cut(s)	136, 786
DpnI	GATC	2 cut(s)	366, 798
DpnII	GATC	2 cut(s)	364, 796
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	24, 506
EarI	CTCTTC	2 cut(s)	24, 506
EciI	GGCGGA	1 cut(s)	313
Ecl136II	GAGCTC	2 cut(s)	217, 516
Eco130I	CCWWGG	1 cut(s)	743
Eco147I	AGGCCT	1 cut(s)	713
Eco24I	GRGCYC	2 cut(s)	219, 518
Eco47I	GGWCC	3 cut(s)	199, 229, 300
Eco53kI	GAGCTC	2 cut(s)	217, 516
EcoICRI	GAGCTC	2 cut(s)	217, 516
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	3 cut(s)	296, 556, 634
EcoT14I	CCWWGG	1 cut(s)	743
EcoT38I	GRGCYC	2 cut(s)	219, 518
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	2 cut(s)	377, 747
FaiI	YATR	6 cut(s)	375, 412, 414, 477, 745, 767
FaqI	GGGAC	3 cut(s)	155, 662, 739
FatI	CATG	2 cut(s)	373, 743
FauI	CCCGC	2 cut(s)	199, 311
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	3 cut(s)	104, 157, 494
FokI	GGATG	2 cut(s)	374, 449
FriOI	GRGCYC	2 cut(s)	219, 518
Fsp4HI	GCNGC	3 cut(s)	104, 157, 494
FspBI	CTAG	5 cut(s)	186, 368, 570, 770, 777
GlaI	GCGC	2 cut(s)	102, 127
GluI	GCNGC	3 cut(s)	104, 157, 494
GsaI	CCCAGC	1 cut(s)	760
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	3 cut(s)	179, 713, 729
HapII	CCGG	3 cut(s)	173, 282, 730
HgaI	GACGC	3 cut(s)	95, 232, 820
HhaI	GCGC	2 cut(s)	103, 128
Hin1I	GRCGYC	2 cut(s)	106, 243
Hin1II	CATG	2 cut(s)	377, 747
Hin6I	GCGC	2 cut(s)	101, 126
HinP1I	GCGC	2 cut(s)	101, 126
HinfI	GANTC	2 cut(s)	539, 545
HpaII	CCGG	3 cut(s)	173, 282, 730
HphI	GGTGA	1 cut(s)	760
Hpy188I	TCNGA	2 cut(s)	436, 544
Hpy188III	TCNNGA	6 cut(s)	262, 316, 420, 508, 683, 800
Hpy99I	CGWCG	4 cut(s)	111, 248, 251, 263
HpyAV	CCTTC	3 cut(s)	106, 205, 719
HpyCH4III	ACNGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 626
Hsp92I	GRCGYC	2 cut(s)	106, 243
Hsp92II	CATG	2 cut(s)	377, 747
HspAI	GCGC	2 cut(s)	101, 126
KpnI	GGTACC	1 cut(s)	789
Ksp22I	TGATCA	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	364, 796
LguI	GCTCTTC	2 cut(s)	24, 506
LmnI	GCTCC	2 cut(s)	214, 521
Lsp1109I	GCAGC	2 cut(s)	168, 505
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	5 cut(s)	186, 368, 570, 770, 777
MaeIII	GTNAC	2 cut(s)	143, 221
MalI	GATC	2 cut(s)	366, 798
MboI	GATC	2 cut(s)	364, 796
MboII	GAAGA	5 cut(s)	11, 220, 435, 523, 670
MhlI	GDGCHC	2 cut(s)	219, 518
MluCI	AATT	5 cut(s)	346, 499, 608, 670, 838
MlyI	GAGTC	1 cut(s)	533
MseI	TTAA	4 cut(s)	120, 267, 345, 847
MslI	CAYNNNNRTG	1 cut(s)	121
MspA1I	CMGCKG	2 cut(s)	194, 496
MspI	CCGG	3 cut(s)	173, 282, 730
MspR9I	CCNGG	4 cut(s)	173, 298, 558, 636
Mva1269I	GAATGC	2 cut(s)	620, 814
MvaI	CCWGG	3 cut(s)	298, 558, 636
MvnI	CGCG	3 cut(s)	101, 103, 194
MwoI	GCNNNNNNNGC	2 cut(s)	377, 626
NciI	CCSGG	1 cut(s)	173
NcoI	CCATGG	1 cut(s)	743
NdeII	GATC	2 cut(s)	364, 796
NlaIII	CATG	2 cut(s)	377, 747
NlaIV	GGNNCC	2 cut(s)	302, 787
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	713
PciI	ACATGT	1 cut(s)	373
PciSI	GCTCTTC	2 cut(s)	24, 506
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	2 cut(s)	620, 814
PfeI	GAWTC	1 cut(s)	545
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	3 cut(s)	105, 158, 495
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PscI	ACATGT	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	345
Psp124BI	GAGCTC	2 cut(s)	219, 518
Psp6I	CCWGG	3 cut(s)	296, 556, 634
PspFI	CCCAGC	1 cut(s)	756
PspGI	CCWGG	3 cut(s)	296, 556, 634
PspN4I	GGNNCC	2 cut(s)	302, 787
PspPI	GGNCC	4 cut(s)	178, 199, 229, 300
PstNI	CAGNNNCTG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	2 cut(s)	137, 787
RsaNI	GTAC	2 cut(s)	136, 786
RseI	CAYNNNNRTG	1 cut(s)	121
SacI	GAGCTC	2 cut(s)	219, 518
SacII	CCGCGG	1 cut(s)	195
SapI	GCTCTTC	2 cut(s)	24, 506
SaqAI	TTAA	4 cut(s)	120, 267, 345, 847
SatI	GCNGC	3 cut(s)	104, 157, 494
Sau3AI	GATC	2 cut(s)	364, 796
Sau96I	GGNCC	4 cut(s)	178, 199, 229, 300
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	4 cut(s)	173, 298, 558, 636
SduI	GDGCHC	2 cut(s)	219, 518
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	151
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
SinI	GGWCC	3 cut(s)	199, 229, 300
SmiI	ATTTAAAT	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	5 cut(s)	346, 499, 608, 670, 838
SseBI	AGGCCT	1 cut(s)	713
SsiI	CCGC	7 cut(s)	33, 103, 192, 194, 304, 324, 789
SspMI	CTAG	5 cut(s)	186, 368, 570, 770, 777
SstI	GAGCTC	2 cut(s)	219, 518
StuI	AGGCCT	1 cut(s)	713
StyD4I	CCNGG	4 cut(s)	171, 296, 556, 634
StyI	CCWWGG	1 cut(s)	743
SwaI	ATTTAAAT	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	3 cut(s)	261, 444, 507
TasI	AATT	5 cut(s)	346, 499, 608, 670, 838
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	4 cut(s)	120, 267, 345, 847
Tru9I	TTAA	4 cut(s)	120, 267, 345, 847
TscAI	CASTG	4 cut(s)	209, 457, 531, 709
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	156, 493
Tsp45I	GTSAC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	4 cut(s)	209, 457, 531, 709
VpaK11BI	GGWCC	3 cut(s)	199, 229, 300
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	2 cut(s)	499, 670
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	642
XspI	CTAG	5 cut(s)	186, 368, 570, 770, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.