Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012578

Physical Location & Seq

Genomic Coordinates Reverse (-)

19833600 .. 19836223

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16660.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGACACTAAGCCCATGACATTTCCATTTTTAGTTTGGGCCCGGTCCAAGAGGAGTTTGAGTTCATGCGTCCAAGTCTTAGTAGCATTATCCGGCTACGGCGGAGTTTGGCGCCTTTCCTCCCCCAAGAAACCACCGAGAGCAATGGCGTTGGAGCGAGCAATTCCGGCAGCAACAAGCGCAACCTTCCTCGCAAACCCCCAAGTTCCCACCTTTTTCCCATCCACCAACCACTTGGCCTTCGCACGGCGCCGTTTCAATCTCAAATGCTCGATGGAGTACAGTAGAGACCAGTACAACGGCAACGGGAGCAGCATTCAGGTGCCGATAGCGTACTCTAGACCGGCGGAGATTCAGTGGAAGAAGGAGCTGTGCAATACGGTGCACCTCATCGGCGTCGTCGGTCTTCCCGTCGAAATTAAGCACCTCCCCTCCGGAAAGGTCCTCGCTTGGACCCGCCTCGCCGTTAAGAAGTCCGCCACCGACACCTCTTGGATTAATCTGACATTTTGGGATGAGCTAGCACATGTTGCTTTTCAGCATGTAGAGAAAGGCCAACAAATATATGTAACGGGCCGTCTGATATCAGATTCTGTGGAAACCGATGAAGGGAAGCAGCAGACCTACTATAAGGTAGTTGTTCAGCAACTGAATTTTGTTGAAAGGGGCTTTTCATCGCTGGCTTTGAAAGATCACGACTCTGATTCATTTACAGCAGGCAAAAATCTTGGCAACAATGCTACAAAGAACATAACGGAAACCACACAAGAATTATGGCAAGCCTTCTTTGCTAATCCAGTTGAATGGTGGGATAATAGGAAGACCAAGAGGAACCCAAAATATCCCGATTTTAAGCATAAAGATACTGGAGAAGCCTTTTGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

296

Amino Acids

33.46

Weight (kDa)

9.53

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22540 FvH4_2g22540
malus_domestica	MD05G1206000.v1.1 MD10G1193100.v1.1
prunus_persica	Prupe.8G232500_v2.0.a1
pyrus_communis	pycom05g19220 pycom10g16660
rosa_chinensis	RchiOBHm_Chr6g0289591
rosa_laevigata	RLG00000012290
rosa_multiflora	Rmu_sc0001527.1_g000063 Rmu_sc0010363.1_g000003
rosa_roxburghii	Rroxscaffold_7G00177830
rosa_rugosa	Rorug06G0204900 Rorug06G0205000
rosa_samantha	Rh6AG316500 Rh6BG322900 Rh6CG329400 Rh6DG314900
rosa_wichuraiana	Rw6G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	111, 249, 322
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	4 cut(s)	102, 347, 457, 477
AcsI	RAATTY	1 cut(s)	652
AcyI	GRCGYC	3 cut(s)	112, 250, 396
AfaI	GTAC	3 cut(s)	281, 296, 335
AfiI	CCNNNNNNNGG	2 cut(s)	246, 609
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	259, 662, 688, 803
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
AluBI	AGCT	2 cut(s)	370, 520
AluI	AGCT	2 cut(s)	370, 520
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	282
Alw44I	GTGCAC	1 cut(s)	383
AlwNI	CAGNNNCTG	2 cut(s)	593, 649
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	4 cut(s)	39, 237, 553, 574
ApaI	GGGCCC	1 cut(s)	43
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	170, 312, 616
ApoI	RAATTY	1 cut(s)	652
AseI	ATTAAT	1 cut(s)	498
AspLEI	GCGC	3 cut(s)	114, 182, 252
AspS9I	GGNCC	6 cut(s)	39, 40, 45, 442, 453, 574
AsuC2I	CCSGG	1 cut(s)	43
AsuNHI	GCTAGC	1 cut(s)	520
AvaII	GGWCC	3 cut(s)	45, 442, 453
BaeGI	GKGCMC	2 cut(s)	43, 387
BanI	GGYRCC	3 cut(s)	111, 249, 322
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	2 cut(s)	398, 827
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	182, 324, 628
BccI	CCATC	2 cut(s)	229, 268
BceAI	ACGGC	6 cut(s)	115, 237, 263, 316, 449, 561
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	339, 521
BfoI	RGCGCY	2 cut(s)	115, 253
BisI	GCNGC	3 cut(s)	171, 313, 617
BlsI	GCNGC	3 cut(s)	172, 314, 618
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	3 cut(s)	45, 442, 453
BmgT120I	GGNCC	6 cut(s)	39, 40, 45, 442, 453, 574
BmiI	GGNNCC	6 cut(s)	41, 113, 251, 324, 455, 833
BmrFI	CCNGG	1 cut(s)	43
BmtI	GCTAGC	1 cut(s)	524
BpiI	GAAGAC	2 cut(s)	398, 827
BpmI	CTGGAG	1 cut(s)	888
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	3 cut(s)	112, 250, 396
BsaI	GGTCTC	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 341, 371, 416, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 609
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	292, 797, 871
Bse3DI	GCAATG	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	434
BseGI	GGATG	2 cut(s)	221, 520
BseLI	CCNNNNNNNGG	2 cut(s)	246, 609
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	3 cut(s)	292, 797, 871
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	2 cut(s)	43, 387
BseXI	GCAGC	3 cut(s)	182, 324, 628
BshFI	GGCC	4 cut(s)	41, 239, 555, 576
BshNI	GGYRCC	3 cut(s)	111, 249, 322
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	5 cut(s)	43, 93, 167, 344, 435
BslI	CCNNNNNNNGG	2 cut(s)	246, 609
BsmAI	GTCTC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	41, 239, 555, 576
Bso31I	GGTCTC	1 cut(s)	282
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	43, 387
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	691
BspACI	CCGC	4 cut(s)	102, 347, 457, 477
BspANI	GGCC	4 cut(s)	41, 239, 555, 576
BspEI	TCCGGA	1 cut(s)	434
BspLI	GGNNCC	6 cut(s)	41, 113, 251, 324, 455, 833
BspOI	GCTAGC	1 cut(s)	524
BspT107I	GGYRCC	3 cut(s)	111, 249, 322
BspTNI	GGTCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	292, 797, 871
BssAI	RCCGGY	1 cut(s)	343
BssMI	GATC	1 cut(s)	691
BssNI	GRCGYC	3 cut(s)	112, 250, 396
Bst4CI	ACNGT	2 cut(s)	284, 382
BstACI	GRCGYC	3 cut(s)	112, 250, 396
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	5 cut(s)	159, 522, 681, 718, 780
BstDEI	CTNAG	2 cut(s)	9, 79
BstF5I	GGATG	2 cut(s)	221, 520
BstH2I	RGCGCY	2 cut(s)	115, 253
BstHHI	GCGC	3 cut(s)	114, 182, 252
BstKTI	GATC	1 cut(s)	694
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	691
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 179, 309, 530, 788
BstNSI	RCATGY	2 cut(s)	530, 545
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	2 cut(s)	43, 387
BstV1I	GCAGC	3 cut(s)	182, 324, 628
BstV2I	GAAGAC	2 cut(s)	398, 827
BstXI	CCANNNNNNTGG	2 cut(s)	235, 804
BsuRI	GGCC	4 cut(s)	41, 239, 555, 576
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	221, 520
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	5 cut(s)	159, 522, 681, 718, 780
CaiI	CAGNNNCTG	2 cut(s)	593, 649
CfoI	GCGC	3 cut(s)	114, 182, 252
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	6 cut(s)	39, 40, 45, 442, 453, 574
CseI	GACGC	2 cut(s)	58, 385
Csp6I	GTAC	3 cut(s)	280, 295, 334
CviAII	CATG	4 cut(s)	16, 66, 527, 542
CviQI	GTAC	3 cut(s)	280, 295, 334
DdeI	CTNAG	2 cut(s)	9, 79
DinI	GGCGCC	2 cut(s)	113, 251
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
EciI	GGCGGA	3 cut(s)	117, 362, 466
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	585
Eco47I	GGWCC	3 cut(s)	45, 442, 453
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	2 cut(s)	113, 251
EheI	GGCGCC	2 cut(s)	113, 251
FaeI	CATG	4 cut(s)	19, 69, 530, 545
FatI	CATG	4 cut(s)	15, 65, 526, 541
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	3 cut(s)	171, 313, 617
FokI	GGATG	2 cut(s)	208, 527
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	171, 313, 617
FspBI	CTAG	2 cut(s)	339, 521
GlaI	GCGC	3 cut(s)	113, 181, 251
GluI	GCNGC	3 cut(s)	171, 313, 617
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	2 cut(s)	115, 253
HaeIII	GGCC	4 cut(s)	41, 239, 555, 576
HapII	CCGG	5 cut(s)	43, 93, 167, 344, 435
HgaI	GACGC	2 cut(s)	58, 385
HhaI	GCGC	3 cut(s)	114, 182, 252
Hin1I	GRCGYC	3 cut(s)	112, 250, 396
Hin1II	CATG	4 cut(s)	19, 69, 530, 545
Hin6I	GCGC	3 cut(s)	112, 180, 250
HinP1I	GCGC	3 cut(s)	112, 180, 250
HinfI	GANTC	4 cut(s)	352, 590, 698, 704
HpaII	CCGG	5 cut(s)	43, 93, 167, 344, 435
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	4 cut(s)	504, 582, 589, 703
Hpy188III	TCNNGA	4 cut(s)	339, 435, 695, 845
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	3 cut(s)	401, 404, 416
HpyAV	CCTTC	5 cut(s)	196, 250, 358, 602, 793
HpyCH4III	ACNGT	2 cut(s)	284, 382
HpyCH4V	TGCA	2 cut(s)	375, 385
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 179, 309, 530, 788
HpyF3I	CTNAG	2 cut(s)	9, 79
Hsp92I	GRCGYC	3 cut(s)	112, 250, 396
Hsp92II	CATG	4 cut(s)	19, 69, 530, 545
HspAI	GCGC	3 cut(s)	112, 180, 250
KasI	GGCGCC	2 cut(s)	111, 249
Kpn2I	TCCGGA	1 cut(s)	434
Kzo9I	GATC	1 cut(s)	691
LmnI	GCTCC	3 cut(s)	154, 309, 367
Lsp1109I	GCAGC	3 cut(s)	182, 324, 628
MaeI	CTAG	2 cut(s)	339, 521
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	1 cut(s)	693
MboI	GATC	1 cut(s)	691
MboII	GAAGA	3 cut(s)	373, 398, 832
MhlI	GDGCHC	2 cut(s)	43, 387
MluCI	AATT	4 cut(s)	162, 417, 652, 770
Mly113I	GGCGCC	2 cut(s)	112, 250
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	132
MroI	TCCGGA	1 cut(s)	434
MseI	TTAA	5 cut(s)	420, 468, 498, 852, 886
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	5 cut(s)	43, 93, 167, 344, 435
MspR9I	CCNGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	315
MwoI	GCNNNNNNNGC	5 cut(s)	167, 179, 309, 530, 788
NarI	GGCGCC	2 cut(s)	112, 250
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	691
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	4 cut(s)	19, 69, 530, 545
NlaIV	GGNNCC	6 cut(s)	41, 113, 251, 324, 455, 833
NspI	RCATGY	2 cut(s)	530, 545
PciI	ACATGT	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	352, 590, 704
PkrI	GCNGC	3 cut(s)	172, 314, 618
PleI	GAGTC	1 cut(s)	692
PluTI	GGCGCC	2 cut(s)	115, 253
PpsI	GAGTC	1 cut(s)	692
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	442
PspN4I	GGNNCC	6 cut(s)	41, 113, 251, 324, 455, 833
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	6 cut(s)	39, 40, 45, 442, 453, 574
PspPPI	RGGWCCY	1 cut(s)	442
PstNI	CAGNNNCTG	2 cut(s)	593, 649
RsaI	GTAC	3 cut(s)	281, 296, 335
RsaNI	GTAC	3 cut(s)	280, 295, 334
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	5 cut(s)	420, 468, 498, 852, 886
SatI	GCNGC	3 cut(s)	171, 313, 617
Sau3AI	GATC	1 cut(s)	691
Sau96I	GGNCC	6 cut(s)	39, 40, 45, 442, 453, 574
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	43, 387
SfoI	GGCGCC	2 cut(s)	113, 251
SinI	GGWCC	3 cut(s)	45, 442, 453
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	162, 417, 652, 770
SsiI	CCGC	4 cut(s)	102, 347, 457, 477
SspDI	GGCGCC	2 cut(s)	111, 249
SspMI	CTAG	2 cut(s)	339, 521
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	284, 382
TaqI	TCGA	2 cut(s)	272, 414
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	4 cut(s)	162, 417, 652, 770
TatI	WGTACW	2 cut(s)	279, 294
TfiI	GAWTC	3 cut(s)	352, 590, 704
Tru1I	TTAA	5 cut(s)	420, 468, 498, 852, 886
Tru9I	TTAA	5 cut(s)	420, 468, 498, 852, 886
TscAI	CASTG	1 cut(s)	362
TseI	GCWGC	3 cut(s)	170, 312, 616
TspDTI	ATGAA	4 cut(s)	54, 621, 663, 696
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	383
VpaK11BI	GGWCC	3 cut(s)	45, 442, 453
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	1 cut(s)	652
XbaI	TCTAGA	1 cut(s)	338
XceI	RCATGY	2 cut(s)	530, 545
XcmI	CCANNNNNNNNNTGG	3 cut(s)	33, 232, 804
XspI	CTAG	2 cut(s)	339, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.