Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012578

Physical Location & Seq

Genomic Coordinates Forward (+)

17429257 .. 17431223

Gene Structure 1967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGTTAGACCGAGCACTACAAGCAGCAACCTCCACAAACTTCCTCACAAACCCCCAAATCCCCTCTATATCCCCAAACACAACCACCACCACCCACAACCACAACCACTTGGCCTTCGCGCGACGTCGTTTCAGCTTCAAATGCGCGGTGGAGTACAGCAGAGACCACTACAGCAGCAGCGTCCAAGTTCCGGTGGCGCATCCTAGACCGGCGGAGGTCCAGTGGAAGAAGGAGCTCTGTAATACGGTGCAACTCATCGGCGTCGTCGGTCTTCCCGTCGAAATTAAGCACCTTCCCTCCGGTAAAGTCCTCGCCTGGACCCGCCTCGCCGTCAAGAAATCCGCCACCGACACCTCATGGATCAATTTGACATTTTGGGATGAGCTAGCGCATGTTGCTTTTCAGCATTTAGAGAAAGGCCATCAGATATTTGTTTCTGGAAGACTGATTTCAGATGCTGTTGAAACCAATGAGGGGAAACAGCAGACCTACTATAAGGTTGTTGTTCAGCAACTGAATTTTGTTGAAAAGAGCTCCCCAACGGCGAATGGTGGTCAGGACTCGGATTCCTTTACACCAGGCAAGTCATGCAGAAGTTCTAGCCACAGCTTTACGAAGCACACAGAAACCACACAAGAATTGTGGCAAGCATTCTTTGCTAACCCAGTAGAGTGGTGGGATAATAGGAAGACCAAGAGGAATTCAAAATATCCAGATTTTAAGCACAAAGACACCGGAGAAGCCTTGTGGATTGAAGGCCGGAACAATCCTCCATGGGTGAAGTCCCAACTTGCTATACTGGATACAAGAATGGGGACCGCGAATGATCAAGATCTTAAGACGCATTCAAACCTGTTTGCTGAGGATAATTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

293

Amino Acids

33.26

Weight (kDa)

8.87

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSB	PF00436	82 - 175	1.9e-16	Single-strand binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22540 FvH4_2g22540
malus_domestica	MD05G1206000.v1.1 MD10G1193100.v1.1
prunus_persica	Prupe.8G232500_v2.0.a1
pyrus_communis	pycom05g19220 pycom10g16660
rosa_chinensis	RchiOBHm_Chr6g0289591
rosa_laevigata	RLG00000012290
rosa_multiflora	Rmu_sc0001527.1_g000063 Rmu_sc0010363.1_g000003
rosa_roxburghii	Rroxscaffold_7G00177830
rosa_rugosa	Rorug06G0204900 Rorug06G0205000
rosa_samantha	Rh6AG316500 Rh6BG322900 Rh6CG329400 Rh6DG314900
rosa_wichuraiana	Rw6G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	130
AccII	CGCG	4 cut(s)	122, 124, 149, 824
AciI	CCGC	5 cut(s)	149, 215, 325, 345, 822
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	520, 703
AcyI	GRCGYC	2 cut(s)	127, 264
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	193, 477
AflII	CTTAAG	1 cut(s)	839
AgsI	TTSAA	6 cut(s)	142, 467, 530, 708, 758, 852
AjnI	CCWGG	2 cut(s)	317, 580
AluBI	AGCT	5 cut(s)	138, 238, 388, 537, 612
AluI	AGCT	5 cut(s)	138, 238, 388, 537, 612
Alw21I	GWGCWC	3 cut(s)	19, 240, 539
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	2 cut(s)	461, 517
AoxI	GGCC	3 cut(s)	114, 421, 760
ApeKI	GCWGC	3 cut(s)	26, 177, 180
ApoI	RAATTY	2 cut(s)	520, 703
AspLEI	GCGC	4 cut(s)	124, 149, 202, 394
AspS9I	GGNCC	3 cut(s)	220, 321, 819
AsuHPI	GGTGA	1 cut(s)	793
AsuNHI	GCTAGC	1 cut(s)	388
AvaII	GGWCC	3 cut(s)	220, 321, 819
BanII	GRGCYC	2 cut(s)	240, 539
BbsI	GAAGAC	3 cut(s)	266, 451, 698
Bbv12I	GWGCWC	3 cut(s)	19, 240, 539
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	3 cut(s)	38, 189, 192
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	2 cut(s)	317, 561
BciT130I	CCWGG	2 cut(s)	319, 582
BciVI	GTATCC	1 cut(s)	799
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	3 cut(s)	207, 389, 603
BfmI	CTRYAG	1 cut(s)	172
BfrI	CTTAAG	1 cut(s)	839
BfuI	GTATCC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	835
BisI	GCNGC	3 cut(s)	27, 178, 181
BlsI	GCNGC	3 cut(s)	28, 179, 182
Bme1390I	CCNGG	2 cut(s)	319, 582
Bme18I	GGWCC	3 cut(s)	220, 321, 819
BmgT120I	GGNCC	3 cut(s)	220, 321, 819
BmiI	GGNNCC	2 cut(s)	323, 820
BmrFI	CCNGG	2 cut(s)	319, 582
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	2 cut(s)	211, 448
BmtI	GCTAGC	1 cut(s)	392
BmuI	ACTGGG	1 cut(s)	662
BpiI	GAAGAC	3 cut(s)	266, 451, 698
Bpu10I	CCTNAGC	1 cut(s)	864
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	2 cut(s)	127, 264
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	776
BsaWI	WCCGGW	3 cut(s)	193, 302, 737
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 284, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 477
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	3 cut(s)	223, 668, 807
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	319, 582
BseDI	CCNNGG	1 cut(s)	776
BseGI	GGATG	2 cut(s)	202, 388
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	2 cut(s)	193, 477
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	3 cut(s)	223, 668, 807
BseXI	GCAGC	3 cut(s)	38, 189, 192
Bsh1236I	CGCG	4 cut(s)	122, 124, 149, 824
BshFI	GGCC	3 cut(s)	116, 423, 762
BsiHKAI	GWGCWC	3 cut(s)	19, 240, 539
BsiSI	CCGG	5 cut(s)	194, 212, 303, 738, 763
BslFI	GGGAC	2 cut(s)	772, 832
BslI	CCNNNNNNNGG	2 cut(s)	193, 477
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	2 cut(s)	772, 832
BsmI	GAATGC	2 cut(s)	653, 847
BsnI	GGCC	3 cut(s)	116, 423, 762
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	19, 240, 539
Bsp143I	GATC	3 cut(s)	363, 829, 835
Bsp19I	CCATGG	1 cut(s)	776
BspACI	CCGC	5 cut(s)	149, 215, 325, 345, 822
BspANI	GGCC	3 cut(s)	116, 423, 762
BspCNI	CTCAG	1 cut(s)	856
BspFNI	CGCG	4 cut(s)	122, 124, 149, 824
BspLI	GGNNCC	2 cut(s)	323, 820
BspOI	GCTAGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	371
BspTI	CTTAAG	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	223, 668, 807
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	776
BssMI	GATC	3 cut(s)	363, 829, 835
BssNI	GRCGYC	2 cut(s)	127, 264
BssT1I	CCWWGG	1 cut(s)	776
Bst2UI	CCWGG	2 cut(s)	319, 582
Bst4CI	ACNGT	1 cut(s)	250
BstACI	GRCGYC	2 cut(s)	127, 264
BstAFI	CTTAAG	1 cut(s)	839
BstAPI	GCANNNNNTGC	2 cut(s)	591, 659
BstC8I	GCNNGC	2 cut(s)	390, 651
BstDEI	CTNAG	1 cut(s)	864
BstDSI	CCRYGG	1 cut(s)	776
BstF5I	GGATG	2 cut(s)	202, 388
BstFNI	CGCG	4 cut(s)	122, 124, 149, 824
BstHHI	GCGC	4 cut(s)	124, 149, 202, 394
BstKTI	GATC	3 cut(s)	366, 832, 838
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	363, 829, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 144, 398, 591, 659
BstNI	CCWGG	2 cut(s)	319, 582
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	317, 580
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	4 cut(s)	122, 124, 149, 824
BstV1I	GCAGC	3 cut(s)	38, 189, 192
BstV2I	GAAGAC	3 cut(s)	266, 451, 698
BstX2I	RGATCY	1 cut(s)	835
BstXI	CCANNNNNNTGG	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	835
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	3 cut(s)	116, 423, 762
BtgI	CCRYGG	1 cut(s)	776
BtsCI	GGATG	2 cut(s)	202, 388
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	390, 651
CaiI	CAGNNNCTG	2 cut(s)	461, 517
CfoI	GCGC	4 cut(s)	124, 149, 202, 394
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	220, 321, 819
CseI	GACGC	3 cut(s)	172, 253, 853
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	626, 661
CviAII	CATG	4 cut(s)	360, 395, 591, 777
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	864
DpnI	GATC	3 cut(s)	365, 831, 837
DpnII	GATC	3 cut(s)	363, 829, 835
EciI	GGCGGA	2 cut(s)	230, 334
Ecl136II	GAGCTC	2 cut(s)	238, 537
Eco130I	CCWWGG	1 cut(s)	776
Eco24I	GRGCYC	2 cut(s)	240, 539
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	220, 321, 819
Eco53kI	GAGCTC	2 cut(s)	238, 537
EcoICRI	GAGCTC	2 cut(s)	238, 537
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	317, 580
EcoT14I	CCWWGG	1 cut(s)	776
EcoT38I	GRGCYC	2 cut(s)	240, 539
ErhI	CCWWGG	1 cut(s)	776
FaeI	CATG	4 cut(s)	363, 398, 594, 780
FaiI	YATR	7 cut(s)	71, 361, 396, 498, 592, 778, 800
FaqI	GGGAC	2 cut(s)	772, 832
FatI	CATG	4 cut(s)	359, 394, 590, 776
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	3 cut(s)	27, 178, 181
FokI	GGATG	2 cut(s)	189, 395
FriOI	GRGCYC	2 cut(s)	240, 539
Fsp4HI	GCNGC	3 cut(s)	27, 178, 181
FspBI	CTAG	3 cut(s)	207, 389, 603
GlaI	GCGC	4 cut(s)	123, 148, 201, 393
GluI	GCNGC	3 cut(s)	27, 178, 181
HaeIII	GGCC	3 cut(s)	116, 423, 762
HapII	CCGG	5 cut(s)	194, 212, 303, 738, 763
HgaI	GACGC	3 cut(s)	172, 253, 853
HhaI	GCGC	4 cut(s)	124, 149, 202, 394
Hin1I	GRCGYC	2 cut(s)	127, 264
Hin1II	CATG	4 cut(s)	363, 398, 594, 780
Hin6I	GCGC	4 cut(s)	122, 147, 200, 392
HinP1I	GCGC	4 cut(s)	122, 147, 200, 392
HinfI	GANTC	2 cut(s)	563, 569
HpaII	CCGG	5 cut(s)	194, 212, 303, 738, 763
HphI	GGTGA	1 cut(s)	793
Hpy188I	TCNGA	3 cut(s)	429, 457, 568
Hpy188III	TCNNGA	5 cut(s)	337, 441, 560, 716, 833
Hpy99I	CGWCG	5 cut(s)	129, 132, 269, 272, 284
HpyAV	CCTTC	4 cut(s)	127, 226, 305, 752
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	253, 594
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 144, 398, 591, 659
HpyF3I	CTNAG	1 cut(s)	864
HpySE526I	ACGT	1 cut(s)	127
Hsp92I	GRCGYC	2 cut(s)	127, 264
Hsp92II	CATG	4 cut(s)	363, 398, 594, 780
HspAI	GCGC	4 cut(s)	122, 147, 200, 392
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	3 cut(s)	363, 829, 835
LmnI	GCTCC	2 cut(s)	235, 542
Lsp1109I	GCAGC	3 cut(s)	38, 189, 192
LweI	GCATC	2 cut(s)	211, 448
MaeI	CTAG	3 cut(s)	207, 389, 603
MaeII	ACGT	1 cut(s)	127
MalI	GATC	3 cut(s)	365, 831, 837
MboI	GATC	3 cut(s)	363, 829, 835
MboII	GAAGA	4 cut(s)	241, 266, 456, 703
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	3 cut(s)	19, 240, 539
MluCI	AATT	6 cut(s)	285, 367, 520, 641, 703, 871
MlyI	GAGTC	1 cut(s)	557
MseI	TTAA	3 cut(s)	288, 723, 840
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	5 cut(s)	194, 212, 303, 738, 763
MspR9I	CCNGG	2 cut(s)	319, 582
Mva1269I	GAATGC	2 cut(s)	653, 847
MvaI	CCWGG	2 cut(s)	319, 582
MvnI	CGCG	4 cut(s)	122, 124, 149, 824
MwoI	GCNNNNNNNGC	5 cut(s)	23, 144, 398, 591, 659
NcoI	CCATGG	1 cut(s)	776
NdeII	GATC	3 cut(s)	363, 829, 835
NheI	GCTAGC	1 cut(s)	388
NlaIII	CATG	4 cut(s)	363, 398, 594, 780
NlaIV	GGNNCC	2 cut(s)	323, 820
NspI	RCATGY	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	2 cut(s)	653, 847
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	28, 179, 182
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Psp124BI	GAGCTC	2 cut(s)	240, 539
Psp6I	CCWGG	2 cut(s)	317, 580
PspGI	CCWGG	2 cut(s)	317, 580
PspN4I	GGNNCC	2 cut(s)	323, 820
PspPI	GGNCC	3 cut(s)	220, 321, 819
PstNI	CAGNNNCTG	2 cut(s)	461, 517
PsuI	RGATCY	1 cut(s)	835
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	2 cut(s)	240, 539
SaqAI	TTAA	3 cut(s)	288, 723, 840
SatI	GCNGC	3 cut(s)	27, 178, 181
Sau3AI	GATC	3 cut(s)	363, 829, 835
Sau96I	GGNCC	3 cut(s)	220, 321, 819
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	2 cut(s)	319, 582
SduI	GDGCHC	3 cut(s)	19, 240, 539
SfaNI	GCATC	2 cut(s)	211, 448
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	3 cut(s)	220, 321, 819
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	6 cut(s)	285, 367, 520, 641, 703, 871
SsiI	CCGC	5 cut(s)	149, 215, 325, 345, 822
SspMI	CTAG	3 cut(s)	207, 389, 603
SstI	GAGCTC	2 cut(s)	240, 539
StyD4I	CCNGG	2 cut(s)	317, 580
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	282
TaqII	GACCGA	2 cut(s)	27, 260
TasI	AATT	6 cut(s)	285, 367, 520, 641, 703, 871
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	3 cut(s)	288, 723, 840
Tru9I	TTAA	3 cut(s)	288, 723, 840
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	3 cut(s)	26, 177, 180
TspRI	CASTG	1 cut(s)	230
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	3 cut(s)	220, 321, 819
XapI	RAATTY	2 cut(s)	520, 703
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675
XspI	CTAG	3 cut(s)	207, 389, 603
ZraI	GACGTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.