Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012578

Physical Location & Seq

Genomic Coordinates Reverse (-)

33516467 .. 33519022

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1206000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAACGCGGTCTAAGTAGCATTATCCGACAACGGCGGAGTTTTGGCGCCATCCCCCAAAAACCGCCGAGAGCAATGGCGTTAGAGCGAGCAATTCCGGCAGCAACAAGCACAACCTTCCTCGCCAACCCCAAAGTTCCCGCATTTTTCCCAACCACCAACCACTTGGCCTTCGCACGGCGCCGGTTCAATCTCAAATTCTCGATGGAGTACAGTAGAGACCAGTACAACGGCAGCGGGAGCAGCATTCAGGTGCCGATAGCGTTTCCTAGACCGGCGGAGGTCCAGTGGAAAAAGGAGCTGTGCAATATGGTGCACCTCATCGGCGTCGTCGGTCTTCCCGTCGAAATTAAGCACCTCCCCTCCGGAAAGGTCCTCGCTTGGACCCGCCTCGCCGTCAAGAAGTCCGCCACCGATACCTCTTGGATTAATCTGACATTTTGGGATGAGCTTGCACATGTTGCTTTTCAGCATGTAGAGAAAGGCCAACAAATATATGTATCGGGCCGTCTGATTTCAGATTCTGTTGAAACCGACGAAGGGAAGCAGCAGACCTACTACAAGGTAGTTGTTCAGCAACTGAATTTTGTTGAAAAGGGCTTTTCATCGCCGGCATTGAAAGATCACGACTCTGATTCCTTTACAGCGGGCAGAAATCTTGGCAACAATGCCACAAAGAACATAACGGAAACAACACAAGAATTATGGCAAGCCTTCTTTGCTAATCCAGTTGACTGGTGGGATAATAGGAATACCAAGAGGAACCCAAAATATCCAGATTTTAAGCATAAAGATACTGGAGAAGCCTTGTGGATTGAAGGCCGGAACAATCCGCCGTGGGTGAAGTCCCAACTTGCCATACTGGATACAAGAATGGGGACCCTTAATGACCAAGAACATAACCTGCATACAGATATATTTGCCGGTGATAGTTTTTCGCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

316

Amino Acids

35.78

Weight (kDa)

9.47

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSB	PF00436	103 - 196	7.6e-17	Single-strand binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22540 FvH4_2g22540
malus_domestica	MD05G1206000.v1.1 MD10G1193100.v1.1
prunus_persica	Prupe.8G232500_v2.0.a1
pyrus_communis	pycom05g19220 pycom10g16660
rosa_chinensis	RchiOBHm_Chr6g0289591
rosa_laevigata	RLG00000012290
rosa_multiflora	Rmu_sc0001527.1_g000063 Rmu_sc0010363.1_g000003
rosa_roxburghii	Rroxscaffold_7G00177830
rosa_rugosa	Rorug06G0204900 Rorug06G0205000
rosa_samantha	Rh6AG316500 Rh6BG322900 Rh6CG329400 Rh6DG314900
rosa_wichuraiana	Rw6G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	912
AccB1I	GGYRCC	3 cut(s)	47, 180, 253
AccII	CGCG	1 cut(s)	9
AccIII	TCCGGA	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	197, 583
AcyI	GRCGYC	3 cut(s)	48, 181, 327
AfaI	GTAC	2 cut(s)	212, 227
AfiI	CCNNNNNNNGG	2 cut(s)	177, 540
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	190, 530, 593, 619, 818
AluBI	AGCT	2 cut(s)	301, 451
AluI	AGCT	2 cut(s)	301, 451
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	314
AlwNI	CAGNNNCTG	2 cut(s)	524, 580
Aor13HI	TCCGGA	1 cut(s)	365
AoxI	GGCC	4 cut(s)	168, 484, 505, 820
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	4 cut(s)	101, 234, 243, 547
ApoI	RAATTY	2 cut(s)	197, 583
AseI	ATTAAT	1 cut(s)	429
AspLEI	GCGC	2 cut(s)	50, 183
AspS9I	GGNCC	5 cut(s)	283, 373, 384, 505, 879
AsuHPI	GGTGA	2 cut(s)	853, 938
AvaII	GGWCC	4 cut(s)	283, 373, 384, 879
BaeGI	GKGCMC	1 cut(s)	318
BanI	GGYRCC	3 cut(s)	47, 180, 253
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	113, 246, 255, 559
BccI	CCATC	2 cut(s)	59, 199
BceAI	ACGGC	6 cut(s)	50, 194, 247, 380, 492, 820
BciVI	GTATCC	1 cut(s)	859
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	270
BfoI	RGCGCY	2 cut(s)	51, 184
BfuAI	ACCTGC	1 cut(s)	912
BfuI	GTATCC	1 cut(s)	859
BisI	GCNGC	4 cut(s)	102, 235, 244, 548
BlsI	GCNGC	4 cut(s)	103, 236, 245, 549
Bme18I	GGWCC	4 cut(s)	283, 373, 384, 879
BmgT120I	GGNCC	5 cut(s)	283, 373, 384, 505, 879
BmiI	GGNNCC	7 cut(s)	49, 182, 255, 386, 764, 880, 881
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	819
BsaHI	GRCGYC	3 cut(s)	48, 181, 327
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	836
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 540
Bse118I	RCCGGY	4 cut(s)	183, 274, 610, 923
Bse1I	ACTGG	6 cut(s)	223, 286, 728, 740, 802, 867
Bse3DI	GCAATG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	836
BseGI	GGATG	2 cut(s)	51, 451
BseLI	CCNNNNNNNGG	2 cut(s)	177, 540
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	6 cut(s)	223, 286, 728, 740, 802, 867
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	113, 246, 255, 559
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	170, 486, 507, 822
BshNI	GGYRCC	3 cut(s)	47, 180, 253
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	7 cut(s)	98, 184, 275, 366, 611, 823, 924
BslFI	GGGAC	2 cut(s)	832, 892
BslI	CCNNNNNNNGG	2 cut(s)	177, 540
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	832, 892
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	170, 486, 507, 822
Bso31I	GGTCTC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	622
BspANI	GGCC	4 cut(s)	170, 486, 507, 822
BspEI	TCCGGA	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	7 cut(s)	49, 182, 255, 386, 764, 880, 881
BspMI	ACCTGC	1 cut(s)	912
BspT107I	GGYRCC	3 cut(s)	47, 180, 253
BspTNI	GGTCTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	4 cut(s)	183, 274, 610, 923
BsrI	ACTGG	6 cut(s)	223, 286, 728, 740, 802, 867
BssAI	RCCGGY	4 cut(s)	183, 274, 610, 923
BssECI	CCNNGG	1 cut(s)	836
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	3 cut(s)	48, 181, 327
Bst4CI	ACNGT	1 cut(s)	215
BstACI	GRCGYC	3 cut(s)	48, 181, 327
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	5 cut(s)	90, 453, 612, 649, 711
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	51, 451
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	2 cut(s)	51, 184
BstHHI	GCGC	2 cut(s)	50, 183
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 240, 243, 461, 719
BstNSI	RCATGY	2 cut(s)	461, 476
BstSLI	GKGCMC	1 cut(s)	318
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	4 cut(s)	113, 246, 255, 559
BstV2I	GAAGAC	1 cut(s)	329
BstXI	CCANNNNNNTGG	2 cut(s)	166, 735
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	4 cut(s)	170, 486, 507, 822
BtgI	CCRYGG	1 cut(s)	836
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	51, 451
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	912
Cac8I	GCNNGC	5 cut(s)	90, 453, 612, 649, 711
CaiI	CAGNNNCTG	2 cut(s)	524, 580
CfoI	GCGC	2 cut(s)	50, 183
Cfr10I	RCCGGY	4 cut(s)	183, 274, 610, 923
Cfr13I	GGNCC	5 cut(s)	283, 373, 384, 505, 879
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	211, 226
CviAII	CATG	2 cut(s)	458, 473
CviJI	RGCY	9 cut(s)	170, 301, 451, 486, 507, 600, 713, 806, 822
CviKI_1	RGCY	9 cut(s)	170, 301, 451, 486, 507, 600, 713, 806, 822
CviQI	GTAC	2 cut(s)	211, 226
DdeI	CTNAG	1 cut(s)	14
DinI	GGCGCC	2 cut(s)	49, 182
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
EciI	GGCGGA	4 cut(s)	52, 293, 397, 822
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	4 cut(s)	283, 373, 384, 879
EcoO109I	RGGNCCY	2 cut(s)	373, 879
EgeI	GGCGCC	2 cut(s)	49, 182
EheI	GGCGCC	2 cut(s)	49, 182
FaeI	CATG	2 cut(s)	461, 476
FaqI	GGGAC	2 cut(s)	832, 892
FatI	CATG	2 cut(s)	457, 472
FauI	CCCGC	4 cut(s)	148, 230, 395, 640
Fnu4HI	GCNGC	4 cut(s)	102, 235, 244, 548
FokI	GGATG	2 cut(s)	38, 458
Fsp4HI	GCNGC	4 cut(s)	102, 235, 244, 548
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	2 cut(s)	49, 182
GluI	GCNGC	4 cut(s)	102, 235, 244, 548
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	2 cut(s)	51, 184
HaeIII	GGCC	4 cut(s)	170, 486, 507, 822
HapII	CCGG	7 cut(s)	98, 184, 275, 366, 611, 823, 924
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	2 cut(s)	50, 183
Hin1I	GRCGYC	3 cut(s)	48, 181, 327
Hin1II	CATG	2 cut(s)	461, 476
Hin6I	GCGC	2 cut(s)	48, 181
HinP1I	GCGC	2 cut(s)	48, 181
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	3 cut(s)	521, 629, 635
HpaII	CCGG	7 cut(s)	98, 184, 275, 366, 611, 823, 924
HphI	GGTGA	2 cut(s)	853, 938
Hpy166II	GTNNAC	2 cut(s)	316, 733
Hpy188I	TCNGA	5 cut(s)	29, 435, 513, 520, 634
Hpy188III	TCNNGA	5 cut(s)	202, 366, 400, 626, 776
Hpy8I	GTNNAC	2 cut(s)	316, 733
Hpy99I	CGWCG	4 cut(s)	332, 335, 347, 539
HpyAV	CCTTC	5 cut(s)	127, 181, 533, 724, 812
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	306, 316, 455, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 240, 243, 461, 719
HpyF3I	CTNAG	1 cut(s)	14
Hsp92I	GRCGYC	3 cut(s)	48, 181, 327
Hsp92II	CATG	2 cut(s)	461, 476
HspAI	GCGC	2 cut(s)	48, 181
KasI	GGCGCC	2 cut(s)	47, 180
KflI	GGGWCCC	1 cut(s)	879
Kpn2I	TCCGGA	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	610
KroNI	GCCGGC	1 cut(s)	612
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	2 cut(s)	240, 298
Lsp1109I	GCAGC	4 cut(s)	113, 246, 255, 559
MaeI	CTAG	1 cut(s)	270
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	5 cut(s)	93, 197, 348, 583, 701
Mly113I	GGCGCC	2 cut(s)	48, 181
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	9 cut(s)	131, 274, 329, 368, 373, 386, 401, 430, 753
MroI	TCCGGA	1 cut(s)	365
MroNI	GCCGGC	1 cut(s)	610
MseI	TTAA	4 cut(s)	351, 429, 783, 885
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	237, 647
MspI	CCGG	7 cut(s)	98, 184, 275, 366, 611, 823, 924
Mva1269I	GAATGC	1 cut(s)	246
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	5 cut(s)	98, 240, 243, 461, 719
NaeI	GCCGGC	1 cut(s)	612
NarI	GGCGCC	2 cut(s)	48, 181
NdeII	GATC	1 cut(s)	622
NgoMIV	GCCGGC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	461, 476
NlaIV	GGNNCC	7 cut(s)	49, 182, 255, 386, 764, 880, 881
NmeAIII	GCCGAG	1 cut(s)	93
NspI	RCATGY	2 cut(s)	461, 476
PciI	ACATGT	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	521, 635
PkrI	GCNGC	4 cut(s)	103, 236, 245, 549
PleI	GAGTC	1 cut(s)	623
PluTI	GGCGCC	2 cut(s)	51, 184
PpsI	GAGTC	1 cut(s)	623
PpuMI	RGGWCCY	2 cut(s)	373, 879
PscI	ACATGT	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	429
Psp5II	RGGWCCY	2 cut(s)	373, 879
PspN4I	GGNNCC	7 cut(s)	49, 182, 255, 386, 764, 880, 881
PspPI	GGNCC	5 cut(s)	283, 373, 384, 505, 879
PspPPI	RGGWCCY	2 cut(s)	373, 879
PstNI	CAGNNNCTG	2 cut(s)	524, 580
RsaI	GTAC	2 cut(s)	212, 227
RsaNI	GTAC	2 cut(s)	211, 226
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	4 cut(s)	351, 429, 783, 885
SatI	GCNGC	4 cut(s)	102, 235, 244, 548
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	5 cut(s)	283, 373, 384, 505, 879
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	318
SfoI	GGCGCC	2 cut(s)	49, 182
SinI	GGWCC	4 cut(s)	283, 373, 384, 879
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	93, 197, 348, 583, 701
SspDI	GGCGCC	2 cut(s)	47, 180
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	203, 345
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	5 cut(s)	93, 197, 348, 583, 701
TatI	WGTACW	2 cut(s)	210, 225
TfiI	GAWTC	2 cut(s)	521, 635
Tru1I	TTAA	4 cut(s)	351, 429, 783, 885
Tru9I	TTAA	4 cut(s)	351, 429, 783, 885
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	4 cut(s)	101, 234, 243, 547
TspDTI	ATGAA	2 cut(s)	17, 594
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	1 cut(s)	293
VneI	GTGCAC	1 cut(s)	314
VpaK11BI	GGWCC	4 cut(s)	283, 373, 384, 879
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	2 cut(s)	197, 583
XceI	RCATGY	2 cut(s)	461, 476
XcmI	CCANNNNNNNNNTGG	2 cut(s)	163, 735
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.