Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012578

Physical Location & Seq

Genomic Coordinates Reverse (-)

22095997 .. 22098328

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTGGTCCAAACCTTCCAATAACCCTTGGGGAGTTCAGATGAAACGCAGTCTAAGTAGCATTATCCGACAACGGCGGAGTTTTGGCGCCATCCCCCAAAAAACGCCGAGAGCAATGGTGTTAGAGCGAGCAATTCCGGCAGCAACAAGCACAACCTTCCTCGCCAACCCCAAAGTTCCCGCCTTTTTCCCAACTACCAGCCACTTGGCCTTCGCACGGCGCCGTTTCAATCTCAAATGCTCGATGGAGTACAGTAGAGACCAGTACAACGGCAGCGGGAGCAGCATTCAGGTGCCGATAGCTTTCCCTAGACCGGCGGAGGTCCAGTGGAAAAAGGAGCTGTGCAATATGGTGCACCTCATCGGCGTCGTCGGTCTTCCCGTCGAAATAAAGCACCTCCCCTCCGGAAAGGTCCTCGCTTGGACCCGCCTCGCCGTCAAGAAGTCCGCCACCGATACCTCTTGGATCAATCTGACATTTTGGGATGAGCTTGCACATGTTGCTTTTCAGCATGTAGAGAAAGGCCAACAAATATATGTATCGGGCCGGCTGATATCAGATTCTGTTGAAACCGATGAAGGGAAGCAGCAGACCTATTATAAGGTAGTTGTTCAGCAACTGAATTTTGTTGAAAAGGGCTTTTCATCGCCGGCCATGAAAGATCACGACTCTGATTCCTTTACAGCGGGCAGAAATCTTGGCAGCAATGCCACAAAGAACATAACGGAAACCACTCAAGAATTATGGCAAGCCTTCTTTGCTAATCCAGTTGACTGGTGGGATAATCGGAAGACCAAGAGGAACCCAAAATATCCGGATTTTAAGCATAAAGATACTGGAGAAGCCTTGTGGATTGAAGGCCGGAACAATCCGCCATGGGTGAAGTCCCAACTTGCTATACTGGATGCAAGAATGGGGACCCTTAATGACCAAGAACATAACCTGTATACAGATATATTTGCCGGTGATAGTTTTTCGCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

329

Amino Acids

37.28

Weight (kDa)

9.52

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22540 FvH4_2g22540
malus_domestica	MD05G1206000.v1.1 MD10G1193100.v1.1
prunus_persica	Prupe.8G232500_v2.0.a1
pyrus_communis	pycom05g19220 pycom10g16660
rosa_chinensis	RchiOBHm_Chr6g0289591
rosa_laevigata	RLG00000012290
rosa_multiflora	Rmu_sc0001527.1_g000063 Rmu_sc0010363.1_g000003
rosa_roxburghii	Rroxscaffold_7G00177830
rosa_rugosa	Rorug06G0204900 Rorug06G0205000
rosa_samantha	Rh6AG316500 Rh6BG322900 Rh6CG329400 Rh6DG314900
rosa_wichuraiana	Rw6G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccB1I	GGYRCC	3 cut(s)	86, 219, 292
AccI	GTMKAC	1 cut(s)	947
AccIII	TCCGGA	2 cut(s)	404, 814
AciI	CCGC	8 cut(s)	76, 180, 276, 317, 427, 447, 686, 872
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	622
AcyI	GRCGYC	3 cut(s)	87, 220, 366
AfaI	GTAC	2 cut(s)	251, 266
AfiI	CCNNNNNNNGG	3 cut(s)	216, 313, 579
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	4 cut(s)	229, 569, 632, 857
AluBI	AGCT	3 cut(s)	302, 340, 490
AluI	AGCT	3 cut(s)	302, 340, 490
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	2 cut(s)	563, 619
Aor13HI	TCCGGA	2 cut(s)	404, 814
AoxI	GGCC	5 cut(s)	207, 523, 544, 651, 859
ApaLI	GTGCAC	1 cut(s)	353
ApeKI	GCWGC	5 cut(s)	140, 273, 282, 586, 702
ApoI	RAATTY	1 cut(s)	622
AspLEI	GCGC	2 cut(s)	89, 222
AspS9I	GGNCC	6 cut(s)	6, 322, 412, 423, 544, 918
AsuHPI	GGTGA	2 cut(s)	892, 977
AvaII	GGWCC	5 cut(s)	6, 322, 412, 423, 918
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	3 cut(s)	86, 219, 292
BbsI	GAAGAC	2 cut(s)	368, 797
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	5 cut(s)	152, 285, 294, 598, 714
BccI	CCATC	2 cut(s)	98, 238
BceAI	ACGGC	5 cut(s)	89, 207, 233, 286, 419
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	2 cut(s)	90, 223
BisI	GCNGC	5 cut(s)	141, 274, 283, 587, 703
BlsI	GCNGC	5 cut(s)	142, 275, 284, 588, 704
Bme18I	GGWCC	5 cut(s)	6, 322, 412, 423, 918
BmgT120I	GGNCC	6 cut(s)	6, 322, 412, 423, 544, 918
BmiI	GGNNCC	7 cut(s)	88, 221, 294, 425, 803, 919, 920
BmsI	GCATC	1 cut(s)	895
BpiI	GAAGAC	2 cut(s)	368, 797
BpmI	CTGGAG	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	720
BsaHI	GRCGYC	3 cut(s)	87, 220, 366
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	26, 875
BsaWI	WCCGGW	2 cut(s)	404, 814
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 386, 416
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 313, 579
Bse118I	RCCGGY	4 cut(s)	313, 546, 649, 962
Bse1I	ACTGG	6 cut(s)	262, 325, 767, 779, 841, 906
Bse3DI	GCAATG	2 cut(s)	120, 712
BseAI	TCCGGA	2 cut(s)	404, 814
BseDI	CCNNGG	2 cut(s)	26, 875
BseGI	GGATG	3 cut(s)	90, 490, 910
BseLI	CCNNNNNNNGG	3 cut(s)	216, 313, 579
BseMI	GCAATG	2 cut(s)	120, 712
BseNI	ACTGG	6 cut(s)	262, 325, 767, 779, 841, 906
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	5 cut(s)	152, 285, 294, 598, 714
BshFI	GGCC	5 cut(s)	209, 525, 546, 653, 861
BshNI	GGYRCC	3 cut(s)	86, 219, 292
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	8 cut(s)	137, 314, 405, 547, 650, 815, 862, 963
BslFI	GGGAC	2 cut(s)	871, 931
BslI	CCNNNNNNNGG	3 cut(s)	216, 313, 579
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	871, 931
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	5 cut(s)	209, 525, 546, 653, 861
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp13I	TCCGGA	2 cut(s)	404, 814
Bsp143I	GATC	2 cut(s)	465, 661
Bsp19I	CCATGG	1 cut(s)	875
BspACI	CCGC	8 cut(s)	76, 180, 276, 317, 427, 447, 686, 872
BspANI	GGCC	5 cut(s)	209, 525, 546, 653, 861
BspEI	TCCGGA	2 cut(s)	404, 814
BspLI	GGNNCC	7 cut(s)	88, 221, 294, 425, 803, 919, 920
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	3 cut(s)	86, 219, 292
BspTNI	GGTCTC	1 cut(s)	252
BsrDI	GCAATG	2 cut(s)	120, 712
BsrFI	RCCGGY	4 cut(s)	313, 546, 649, 962
BsrI	ACTGG	6 cut(s)	262, 325, 767, 779, 841, 906
BssAI	RCCGGY	4 cut(s)	313, 546, 649, 962
BssECI	CCNNGG	2 cut(s)	26, 875
BssMI	GATC	2 cut(s)	465, 661
BssNAI	GTATAC	1 cut(s)	948
BssNI	GRCGYC	3 cut(s)	87, 220, 366
BssT1I	CCWWGG	2 cut(s)	26, 875
Bst1107I	GTATAC	1 cut(s)	948
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	3 cut(s)	87, 220, 366
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	6 cut(s)	129, 492, 548, 651, 688, 750
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	875
BstF5I	GGATG	3 cut(s)	90, 490, 910
BstH2I	RGCGCY	2 cut(s)	90, 223
BstHHI	GCGC	2 cut(s)	89, 222
BstKTI	GATC	2 cut(s)	468, 664
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	465, 661
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 279, 282, 500, 758
BstNSI	RCATGY	2 cut(s)	500, 515
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	5 cut(s)	152, 285, 294, 598, 714
BstV2I	GAAGAC	2 cut(s)	368, 797
BstXI	CCANNNNNNTGG	2 cut(s)	205, 774
BstZ17I	GTATAC	1 cut(s)	948
BsuRI	GGCC	5 cut(s)	209, 525, 546, 653, 861
BtgI	CCRYGG	1 cut(s)	875
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	3 cut(s)	90, 490, 910
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	6 cut(s)	129, 492, 548, 651, 688, 750
CaiI	CAGNNNCTG	2 cut(s)	563, 619
CfoI	GCGC	2 cut(s)	89, 222
Cfr10I	RCCGGY	4 cut(s)	313, 546, 649, 962
Cfr13I	GGNCC	6 cut(s)	6, 322, 412, 423, 544, 918
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	250, 265
CviAII	CATG	4 cut(s)	497, 512, 655, 876
CviQI	GTAC	2 cut(s)	250, 265
DdeI	CTNAG	1 cut(s)	53
DinI	GGCGCC	2 cut(s)	88, 221
DpnI	GATC	2 cut(s)	467, 663
DpnII	GATC	2 cut(s)	465, 661
EaeI	YGGCCR	1 cut(s)	651
EciI	GGCGGA	4 cut(s)	91, 332, 436, 861
Eco130I	CCWWGG	2 cut(s)	26, 875
Eco31I	GGTCTC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	5 cut(s)	6, 322, 412, 423, 918
EcoO109I	RGGNCCY	2 cut(s)	412, 918
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	26, 875
EgeI	GGCGCC	2 cut(s)	88, 221
EheI	GGCGCC	2 cut(s)	88, 221
ErhI	CCWWGG	2 cut(s)	26, 875
FaeI	CATG	4 cut(s)	500, 515, 658, 879
FaqI	GGGAC	2 cut(s)	871, 931
FatI	CATG	4 cut(s)	496, 511, 654, 875
FauI	CCCGC	4 cut(s)	187, 269, 434, 679
FblI	GTMKAC	1 cut(s)	947
Fnu4HI	GCNGC	5 cut(s)	141, 274, 283, 587, 703
FokI	GGATG	3 cut(s)	77, 497, 917
Fsp4HI	GCNGC	5 cut(s)	141, 274, 283, 587, 703
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	88, 221
GluI	GCNGC	5 cut(s)	141, 274, 283, 587, 703
GsuI	CTGGAG	1 cut(s)	858
HaeII	RGCGCY	2 cut(s)	90, 223
HaeIII	GGCC	5 cut(s)	209, 525, 546, 653, 861
HapII	CCGG	8 cut(s)	137, 314, 405, 547, 650, 815, 862, 963
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	2 cut(s)	89, 222
Hin1I	GRCGYC	3 cut(s)	87, 220, 366
Hin1II	CATG	4 cut(s)	500, 515, 658, 879
Hin6I	GCGC	2 cut(s)	87, 220
HinP1I	GCGC	2 cut(s)	87, 220
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	3 cut(s)	560, 668, 674
HpaII	CCGG	8 cut(s)	137, 314, 405, 547, 650, 815, 862, 963
HphI	GGTGA	2 cut(s)	892, 977
Hpy166II	GTNNAC	3 cut(s)	355, 772, 948
Hpy188I	TCNGA	6 cut(s)	39, 68, 474, 559, 673, 789
Hpy188III	TCNNGA	5 cut(s)	405, 439, 665, 737, 815
Hpy8I	GTNNAC	3 cut(s)	355, 772, 948
Hpy99I	CGWCG	3 cut(s)	371, 374, 386
HpyAV	CCTTC	6 cut(s)	24, 166, 220, 572, 763, 851
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	345, 355, 494, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 279, 282, 500, 758
HpyF3I	CTNAG	1 cut(s)	53
Hsp92I	GRCGYC	3 cut(s)	87, 220, 366
Hsp92II	CATG	4 cut(s)	500, 515, 658, 879
HspAI	GCGC	2 cut(s)	87, 220
KasI	GGCGCC	2 cut(s)	86, 219
KflI	GGGWCCC	1 cut(s)	918
Kpn2I	TCCGGA	2 cut(s)	404, 814
KroI	GCCGGC	2 cut(s)	546, 649
KroNI	GCCGGC	2 cut(s)	548, 651
Kzo9I	GATC	2 cut(s)	465, 661
LmnI	GCTCC	2 cut(s)	279, 337
Lsp1109I	GCAGC	5 cut(s)	152, 285, 294, 598, 714
LweI	GCATC	1 cut(s)	895
MaeI	CTAG	1 cut(s)	309
MalI	GATC	2 cut(s)	467, 663
MboI	GATC	2 cut(s)	465, 661
MboII	GAAGA	2 cut(s)	368, 802
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	3 cut(s)	132, 622, 740
Mly113I	GGCGCC	2 cut(s)	87, 220
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	9 cut(s)	170, 313, 368, 407, 412, 425, 440, 469, 792
MroI	TCCGGA	2 cut(s)	404, 814
MroNI	GCCGGC	2 cut(s)	546, 649
MseI	TTAA	2 cut(s)	822, 924
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	276, 686
MspI	CCGG	8 cut(s)	137, 314, 405, 547, 650, 815, 862, 963
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	5 cut(s)	137, 279, 282, 500, 758
NaeI	GCCGGC	2 cut(s)	548, 651
NarI	GGCGCC	2 cut(s)	87, 220
NcoI	CCATGG	1 cut(s)	875
NdeII	GATC	2 cut(s)	465, 661
NgoMIV	GCCGGC	2 cut(s)	546, 649
NlaIII	CATG	4 cut(s)	500, 515, 658, 879
NlaIV	GGNNCC	7 cut(s)	88, 221, 294, 425, 803, 919, 920
NmeAIII	GCCGAG	1 cut(s)	132
NspI	RCATGY	2 cut(s)	500, 515
PciI	ACATGT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	1 cut(s)	285
PdiI	GCCGGC	2 cut(s)	548, 651
PfeI	GAWTC	2 cut(s)	560, 674
PkrI	GCNGC	5 cut(s)	142, 275, 284, 588, 704
PleI	GAGTC	1 cut(s)	662
PluTI	GGCGCC	2 cut(s)	90, 223
PpsI	GAGTC	1 cut(s)	662
PpuMI	RGGWCCY	2 cut(s)	412, 918
PscI	ACATGT	1 cut(s)	496
PsiI	TTATAA	1 cut(s)	600
Psp5II	RGGWCCY	2 cut(s)	412, 918
PspN4I	GGNNCC	7 cut(s)	88, 221, 294, 425, 803, 919, 920
PspPI	GGNCC	6 cut(s)	6, 322, 412, 423, 544, 918
PspPPI	RGGWCCY	2 cut(s)	412, 918
PstNI	CAGNNNCTG	2 cut(s)	563, 619
RsaI	GTAC	2 cut(s)	251, 266
RsaNI	GTAC	2 cut(s)	250, 265
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	822, 924
SatI	GCNGC	5 cut(s)	141, 274, 283, 587, 703
Sau3AI	GATC	2 cut(s)	465, 661
Sau96I	GGNCC	6 cut(s)	6, 322, 412, 423, 544, 918
SchI	GAGTC	1 cut(s)	662
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	895
SfoI	GGCGCC	2 cut(s)	88, 221
SinI	GGWCC	5 cut(s)	6, 322, 412, 423, 918
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	3 cut(s)	132, 622, 740
SsiI	CCGC	8 cut(s)	76, 180, 276, 317, 427, 447, 686, 872
SspDI	GGCGCC	2 cut(s)	86, 219
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	26, 875
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	242, 384
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	3 cut(s)	132, 622, 740
TatI	WGTACW	2 cut(s)	249, 264
TfiI	GAWTC	2 cut(s)	560, 674
Tru1I	TTAA	2 cut(s)	822, 924
Tru9I	TTAA	2 cut(s)	822, 924
TscAI	CASTG	1 cut(s)	332
TseI	GCWGC	5 cut(s)	140, 273, 282, 586, 702
TspDTI	ATGAA	4 cut(s)	56, 591, 633, 671
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	1 cut(s)	332
VneI	GTGCAC	1 cut(s)	353
VpaK11BI	GGWCC	5 cut(s)	6, 322, 412, 423, 918
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	2 cut(s)	500, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XmiI	GTMKAC	1 cut(s)	947
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.