Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012578

Physical Location & Seq

Genomic Coordinates Reverse (-)

20655080 .. 20657037

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G232500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGTTAGAGAGAGCACTGCCAGCAGCAACAAGCACAACCTTCCTCACAAACCCCAAAGTTCCCTCCTTTTTCCCAACCACAACCTCCAACCACAACCACAGCCACTTAGCCTTCGCACGGCGCCGTTTCAATATCAAATGCTCGATGGATTACAGTAGAGACCAGTACAACAACAATGGCAGCAGCAGCATTCAAGTGCCCATAGCGTATCCTAGACCGGCTGAGGTTCAGTGGAAGAAGGAGCTGTGCAATACGGTGCACCTCATCGGCGTCGTCGGTCTTCCCATTGAAATTAAGCACCTTCCCTCTGGAAAGGTCGTCGCTTGGACCCGCCTCGCCGTCAAGAAATCATCTTCCGACACCTCATGGATCAATTTGACATTTTGGGATGAGATGGCGCATGTTGCTTTCCAGCATGTAGAGAAAGGCAATCAAATATATGTCATTGGTCGTCTGATTACAGATTCTGTTGAAACCAATGAAGGGAAGCAGCAGACTTACTATAAGGTAGTTGTTCAGCAACTGAATTTTGTTGAGAAGGGCTTTTCATCTTTGGTCTTGAATGATCATGACTCTGATTCAATTACAGCAGGCAAAAATACTGGCAACGGTGCCGCAAAGAACAGTACAGAAACCACACAAGAATTGTGGCAAGCCTTTTTTGCTAATCCAGTGGACTGGTGGGATAATAGGAAGACCAAGAGGAACCCAAAATATCCGGATTTTAAGCATAAAGATACTGGAGAAGCCTTGTGGATTGAAGGCCGGTACAATCCGCCATGGGTGAAATCCCAACTTGCTATACTGGATTCAAGAATGGGGACCCTTAATGACCAAGATCTTAAGATGCACTCAAATATATTTGCTGGGGATGATTTTTCGCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

298

Amino Acids

33.7

Weight (kDa)

8.7

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22540 FvH4_2g22540
malus_domestica	MD05G1206000.v1.1 MD10G1193100.v1.1
prunus_persica	Prupe.8G232500_v2.0.a1
pyrus_communis	pycom05g19220 pycom10g16660
rosa_chinensis	RchiOBHm_Chr6g0289591
rosa_laevigata	RLG00000012290
rosa_multiflora	Rmu_sc0001527.1_g000063 Rmu_sc0010363.1_g000003
rosa_roxburghii	Rroxscaffold_7G00177830
rosa_rugosa	Rorug06G0204900 Rorug06G0205000
rosa_samantha	Rh6AG316500 Rh6BG322900 Rh6CG329400 Rh6DG314900
rosa_wichuraiana	Rw6G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	123, 614
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	3 cut(s)	334, 618, 779
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	2 cut(s)	124, 273
AfaI	GTAC	3 cut(s)	170, 631, 773
AfiI	CCNNNNNNNGG	2 cut(s)	120, 486
AflII	CTTAAG	1 cut(s)	845
AgsI	TTSAA	8 cut(s)	133, 197, 293, 476, 565, 585, 764, 816
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	2 cut(s)	19, 264
Alw26I	GTCTC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	2 cut(s)	470, 526
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	1 cut(s)	766
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	5 cut(s)	26, 183, 186, 189, 493
ApoI	RAATTY	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	126, 403
AspS9I	GGNCC	2 cut(s)	330, 825
AsuHPI	GGTGA	1 cut(s)	799
AvaII	GGWCC	2 cut(s)	330, 825
BaeGI	GKGCMC	2 cut(s)	204, 264
BanI	GGYRCC	2 cut(s)	123, 614
BbsI	GAAGAC	2 cut(s)	275, 704
Bbv12I	GWGCWC	2 cut(s)	19, 264
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	5 cut(s)	38, 195, 198, 201, 505
BccI	CCATC	2 cut(s)	142, 391
BceAI	ACGGC	3 cut(s)	111, 137, 326
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	845
BfuI	GTATCC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	6 cut(s)	27, 184, 187, 190, 494, 618
BlsI	GCNGC	6 cut(s)	28, 185, 188, 191, 495, 619
Bme18I	GGWCC	2 cut(s)	330, 825
BmgT120I	GGNCC	2 cut(s)	330, 825
BmiI	GGNNCC	6 cut(s)	125, 332, 616, 710, 826, 827
BmsI	GCATC	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	275, 704
BpmI	CTGGAG	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	124, 273
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	782
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 486
Bse118I	RCCGGY	2 cut(s)	220, 768
Bse1I	ACTGG	6 cut(s)	166, 610, 674, 686, 748, 813
BseAI	TCCGGA	1 cut(s)	721
BseDI	CCNNGG	1 cut(s)	782
BseGI	GGATG	2 cut(s)	397, 880
BseLI	CCNNNNNNNGG	2 cut(s)	120, 486
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	6 cut(s)	166, 610, 674, 686, 748, 813
BseSI	GKGCMC	2 cut(s)	204, 264
BseXI	GCAGC	5 cut(s)	38, 195, 198, 201, 505
BseYI	CCCAGC	1 cut(s)	869
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	2 cut(s)	123, 614
BsiHKAI	GWGCWC	2 cut(s)	19, 264
BsiSI	CCGG	3 cut(s)	221, 722, 769
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	2 cut(s)	120, 486
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	838
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	768
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	3 cut(s)	19, 204, 264
Bsp13I	TCCGGA	1 cut(s)	721
Bsp143I	GATC	3 cut(s)	372, 568, 841
Bsp19I	CCATGG	1 cut(s)	782
BspACI	CCGC	3 cut(s)	334, 618, 779
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	1 cut(s)	217
BspEI	TCCGGA	1 cut(s)	721
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	6 cut(s)	125, 332, 616, 710, 826, 827
BspPI	GGATC	1 cut(s)	380
BspT107I	GGYRCC	2 cut(s)	123, 614
BspTI	CTTAAG	1 cut(s)	845
BspTNI	GGTCTC	1 cut(s)	156
BsrFI	RCCGGY	2 cut(s)	220, 768
BsrI	ACTGG	6 cut(s)	166, 610, 674, 686, 748, 813
BssAI	RCCGGY	2 cut(s)	220, 768
BssECI	CCNNGG	1 cut(s)	782
BssMI	GATC	3 cut(s)	372, 568, 841
BssNI	GRCGYC	2 cut(s)	124, 273
BssT1I	CCWWGG	1 cut(s)	782
Bst4CI	ACNGT	4 cut(s)	158, 259, 614, 629
BstACI	GRCGYC	2 cut(s)	124, 273
BstAFI	CTTAAG	1 cut(s)	845
BstC8I	GCNNGC	3 cut(s)	24, 595, 657
BstDEI	CTNAG	2 cut(s)	109, 225
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	2 cut(s)	397, 880
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 403
BstKTI	GATC	3 cut(s)	375, 571, 844
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	372, 568, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 189, 407, 665
BstNSI	RCATGY	2 cut(s)	407, 422
BstSLI	GKGCMC	2 cut(s)	204, 264
BstV1I	GCAGC	5 cut(s)	38, 195, 198, 201, 505
BstV2I	GAAGAC	2 cut(s)	275, 704
BstX2I	RGATCY	1 cut(s)	841
BstXI	CCANNNNNNTGG	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	841
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	768
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	397, 880
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	3 cut(s)	17, 239, 681
Cac8I	GCNNGC	3 cut(s)	24, 595, 657
CaiI	CAGNNNCTG	2 cut(s)	470, 526
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	2 cut(s)	126, 403
Cfr10I	RCCGGY	2 cut(s)	220, 768
Cfr13I	GGNCC	2 cut(s)	330, 825
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	169, 630, 772
CspCI	CAANNNNNGTGG	2 cut(s)	632, 667
CviAII	CATG	5 cut(s)	369, 404, 419, 572, 783
CviJI	RGCY	8 cut(s)	105, 113, 224, 247, 546, 659, 752, 768
CviKI_1	RGCY	8 cut(s)	105, 113, 224, 247, 546, 659, 752, 768
CviQI	GTAC	3 cut(s)	169, 630, 772
DdeI	CTNAG	2 cut(s)	109, 225
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	3 cut(s)	374, 570, 843
DpnII	GATC	3 cut(s)	372, 568, 841
EciI	GGCGGA	1 cut(s)	768
Eco130I	CCWWGG	1 cut(s)	782
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	330, 825
EcoO109I	RGGNCCY	1 cut(s)	825
EcoT14I	CCWWGG	1 cut(s)	782
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	5 cut(s)	372, 407, 422, 575, 786
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	5 cut(s)	368, 403, 418, 571, 782
FauI	CCCGC	1 cut(s)	341
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	6 cut(s)	27, 184, 187, 190, 494, 618
FokI	GGATG	2 cut(s)	404, 887
Fsp4HI	GCNGC	6 cut(s)	27, 184, 187, 190, 494, 618
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	2 cut(s)	125, 402
GluI	GCNGC	6 cut(s)	27, 184, 187, 190, 494, 618
GsaI	CCCAGC	1 cut(s)	873
GsuI	CTGGAG	1 cut(s)	765
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	3 cut(s)	221, 722, 769
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	2 cut(s)	126, 403
Hin1I	GRCGYC	2 cut(s)	124, 273
Hin1II	CATG	5 cut(s)	372, 407, 422, 575, 786
Hin6I	GCGC	2 cut(s)	124, 401
HinP1I	GCGC	2 cut(s)	124, 401
HinfI	GANTC	4 cut(s)	467, 575, 581, 812
HpaII	CCGG	3 cut(s)	221, 722, 769
HphI	GGTGA	1 cut(s)	799
Hpy166II	GTNNAC	2 cut(s)	262, 679
Hpy188I	TCNGA	3 cut(s)	361, 459, 580
Hpy188III	TCNNGA	6 cut(s)	312, 346, 562, 572, 722, 816
Hpy8I	GTNNAC	2 cut(s)	262, 679
Hpy99I	CGWCG	3 cut(s)	278, 281, 326
HpyAV	CCTTC	7 cut(s)	52, 124, 235, 314, 479, 535, 758
HpyCH4III	ACNGT	4 cut(s)	158, 259, 614, 629
HpyCH4V	TGCA	3 cut(s)	252, 262, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 189, 407, 665
HpyF3I	CTNAG	2 cut(s)	109, 225
Hsp92I	GRCGYC	2 cut(s)	124, 273
Hsp92II	CATG	5 cut(s)	372, 407, 422, 575, 786
HspAI	GCGC	2 cut(s)	124, 401
KasI	GGCGCC	1 cut(s)	123
KflI	GGGWCCC	1 cut(s)	825
Kpn2I	TCCGGA	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	372, 568, 841
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	5 cut(s)	38, 195, 198, 201, 505
LweI	GCATC	1 cut(s)	840
MaeI	CTAG	1 cut(s)	216
MalI	GATC	3 cut(s)	374, 570, 843
MboI	GATC	3 cut(s)	372, 568, 841
MboII	GAAGA	4 cut(s)	250, 275, 348, 709
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	3 cut(s)	19, 204, 264
MluCI	AATT	5 cut(s)	294, 376, 529, 585, 647
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	2 cut(s)	114, 384
MnlI	CCTC	9 cut(s)	56, 76, 97, 220, 275, 319, 347, 376, 699
MroI	TCCGGA	1 cut(s)	721
MseI	TTAA	4 cut(s)	297, 729, 831, 846
MslI	CAYNNNNRTG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	3 cut(s)	221, 722, 769
Mva1269I	GAATGC	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	23, 189, 407, 665
NarI	GGCGCC	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	372, 568, 841
NlaIII	CATG	5 cut(s)	372, 407, 422, 575, 786
NlaIV	GGNNCC	6 cut(s)	125, 332, 616, 710, 826, 827
NspI	RCATGY	2 cut(s)	407, 422
PagI	TCATGA	1 cut(s)	571
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	467, 581, 812
PkrI	GCNGC	6 cut(s)	28, 185, 188, 191, 495, 619
PleI	GAGTC	1 cut(s)	569
PluTI	GGCGCC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	569
PpuMI	RGGWCCY	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	825
PspFI	CCCAGC	1 cut(s)	869
PspN4I	GGNNCC	6 cut(s)	125, 332, 616, 710, 826, 827
PspPI	GGNCC	2 cut(s)	330, 825
PspPPI	RGGWCCY	1 cut(s)	825
PstNI	CAGNNNCTG	2 cut(s)	470, 526
PsuI	RGATCY	1 cut(s)	841
RsaI	GTAC	3 cut(s)	170, 631, 773
RsaNI	GTAC	3 cut(s)	169, 630, 772
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	297, 729, 831, 846
SatI	GCNGC	6 cut(s)	27, 184, 187, 190, 494, 618
Sau3AI	GATC	3 cut(s)	372, 568, 841
Sau96I	GGNCC	2 cut(s)	330, 825
SchI	GAGTC	1 cut(s)	569
SduI	GDGCHC	3 cut(s)	19, 204, 264
SetI	ASST	9 cut(s)	44, 89, 231, 249, 267, 306, 321, 368, 513
SfaNI	GCATC	1 cut(s)	840
SfoI	GGCGCC	1 cut(s)	125
SinI	GGWCC	2 cut(s)	330, 825
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	5 cut(s)	294, 376, 529, 585, 647
SsiI	CCGC	3 cut(s)	334, 618, 779
SspDI	GGCGCC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	4 cut(s)	158, 259, 614, 629
TaqI	TCGA	1 cut(s)	146
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	5 cut(s)	294, 376, 529, 585, 647
TatI	WGTACW	2 cut(s)	168, 629
TauI	GCSGC	1 cut(s)	620
TfiI	GAWTC	3 cut(s)	467, 581, 812
Tru1I	TTAA	4 cut(s)	297, 729, 831, 846
Tru9I	TTAA	4 cut(s)	297, 729, 831, 846
TscAI	CASTG	3 cut(s)	24, 239, 681
TseI	GCWGC	5 cut(s)	26, 183, 186, 189, 493
TspDTI	ATGAA	2 cut(s)	498, 540
TspRI	CASTG	3 cut(s)	24, 239, 681
Vha464I	CTTAAG	1 cut(s)	845
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	330, 825
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	2 cut(s)	407, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.