Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010363.1

Orthogroup ID

OG0012578

Physical Location & Seq

Genomic Coordinates Forward (+)

9868 .. 11072

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010363.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggcgttagaccgagcactacactcagcaacctccacaaacttcctcacaaacccacaaatcccctctatatccccaaacacaacgaccaccacccacaaccacttggccttcgcgcgacgtcgtttcagcttcaaatgcgcggtggagtacagcagagaccactacagcagcagcgtccaagttccggtggcgcatcctagaccggcggaggtccagtggaagaaggagctctgtaatacggtgcaactcatcggcgtcgtcggtcttcccgtcgaaattaagcaccttccctccggtaaagtcctcgcctggacccgcctcgccgtcaagaaatccgccaccgacacctcatggatcaatttgacattttgggatgagctagcgcatgttgcttttcagcatttagagaaaggccatcagatatatgtttctggaagactgatttcagatgctgttgaaaccaatgaggggaaacagcagacctactataaggttgttgttcagcaactgaattttgttgaaaagagctccccaacggcgaatggtggtcaggactcggaatcctttacaccaggcagaagttctagccacagctttacaaagcacacagaaaccacacaagaattgtggcaagcattctttgctaatccagtagagtggtgggataataggaagaccaagagtgaggtagttttcccaaataccactctgtatacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

240

Amino Acids

27.13

Weight (kDa)

8.82

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22540 FvH4_2g22540
malus_domestica	MD05G1206000.v1.1 MD10G1193100.v1.1
prunus_persica	Prupe.8G232500_v2.0.a1
pyrus_communis	pycom05g19220 pycom10g16660
rosa_chinensis	RchiOBHm_Chr6g0289591
rosa_laevigata	RLG00000012290
rosa_multiflora	Rmu_sc0001527.1_g000063 Rmu_sc0010363.1_g000003
rosa_roxburghii	Rroxscaffold_7G00177830
rosa_rugosa	Rorug06G0204900 Rorug06G0205000
rosa_samantha	Rh6AG316500 Rh6BG322900 Rh6CG329400 Rh6DG314900
rosa_wichuraiana	Rw6G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	3 cut(s)	116, 118, 143
AciI	CCGC	4 cut(s)	143, 209, 319, 339
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	514
AcyI	GRCGYC	2 cut(s)	121, 258
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	187, 471
AgsI	TTSAA	3 cut(s)	136, 461, 524
AjnI	CCWGG	2 cut(s)	311, 574
AluBI	AGCT	5 cut(s)	132, 232, 382, 531, 597
AluI	AGCT	5 cut(s)	132, 232, 382, 531, 597
Alw21I	GWGCWC	3 cut(s)	19, 234, 533
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	2 cut(s)	455, 511
AoxI	GGCC	2 cut(s)	108, 415
ApeKI	GCWGC	2 cut(s)	171, 174
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	4 cut(s)	118, 143, 196, 388
AspS9I	GGNCC	2 cut(s)	214, 315
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	2 cut(s)	214, 315
BanII	GRGCYC	2 cut(s)	234, 533
BbsI	GAAGAC	3 cut(s)	260, 445, 683
Bbv12I	GWGCWC	3 cut(s)	19, 234, 533
BbvI	GCAGC	2 cut(s)	183, 186
BccI	CCATC	1 cut(s)	426
BceAI	ACGGC	2 cut(s)	311, 555
BciT130I	CCWGG	2 cut(s)	313, 576
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	3 cut(s)	201, 383, 588
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	172, 175
BlsI	GCNGC	2 cut(s)	173, 176
Bme1390I	CCNGG	2 cut(s)	313, 576
Bme18I	GGWCC	2 cut(s)	214, 315
BmgT120I	GGNCC	2 cut(s)	214, 315
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	2 cut(s)	313, 576
BmsI	GCATC	2 cut(s)	205, 442
BmtI	GCTAGC	1 cut(s)	386
BpiI	GAAGAC	3 cut(s)	260, 445, 683
BsaHI	GRCGYC	2 cut(s)	121, 258
BsaI	GGTCTC	1 cut(s)	153
BsaWI	WCCGGW	2 cut(s)	187, 296
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 471
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	217, 653
BseBI	CCWGG	2 cut(s)	313, 576
BseGI	GGATG	2 cut(s)	196, 382
BseLI	CCNNNNNNNGG	2 cut(s)	187, 471
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	217, 653
BseXI	GCAGC	2 cut(s)	183, 186
Bsh1236I	CGCG	3 cut(s)	116, 118, 143
BshFI	GGCC	2 cut(s)	110, 417
BsiHKAI	GWGCWC	3 cut(s)	19, 234, 533
BsiSI	CCGG	3 cut(s)	188, 206, 297
BslI	CCNNNNNNNGG	2 cut(s)	187, 471
BsmAI	GTCTC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	110, 417
Bso31I	GGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	19, 234, 533
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	4 cut(s)	143, 209, 319, 339
BspANI	GGCC	2 cut(s)	110, 417
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	3 cut(s)	116, 118, 143
BspLI	GGNNCC	1 cut(s)	317
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	217, 653
BssAI	RCCGGY	1 cut(s)	205
BssMI	GATC	1 cut(s)	357
BssNAI	GTATAC	1 cut(s)	717
BssNI	GRCGYC	2 cut(s)	121, 258
Bst1107I	GTATAC	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	313, 576
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	2 cut(s)	121, 258
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	384, 636
BstDEI	CTNAG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	196, 382
BstFNI	CGCG	3 cut(s)	116, 118, 143
BstHHI	GCGC	4 cut(s)	118, 143, 196, 388
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 392, 644
BstNI	CCWGG	2 cut(s)	313, 576
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	311, 574
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	3 cut(s)	116, 118, 143
BstV1I	GCAGC	2 cut(s)	183, 186
BstV2I	GAAGAC	3 cut(s)	260, 445, 683
BstXI	CCANNNNNNTGG	1 cut(s)	660
BstZ17I	GTATAC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	110, 417
BtsCI	GGATG	2 cut(s)	196, 382
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	384, 636
CaiI	CAGNNNCTG	2 cut(s)	455, 511
CfoI	GCGC	4 cut(s)	118, 143, 196, 388
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	214, 315
CseI	GACGC	2 cut(s)	166, 247
Csp6I	GTAC	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	611, 646
CviAII	CATG	2 cut(s)	354, 389
CviJI	RGCY	8 cut(s)	110, 132, 232, 382, 417, 531, 591, 597
CviKI_1	RGCY	8 cut(s)	110, 132, 232, 382, 417, 531, 591, 597
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
EciI	GGCGGA	2 cut(s)	224, 328
Ecl136II	GAGCTC	2 cut(s)	232, 531
Eco24I	GRGCYC	2 cut(s)	234, 533
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	214, 315
Eco53kI	GAGCTC	2 cut(s)	232, 531
EcoICRI	GAGCTC	2 cut(s)	232, 531
EcoRII	CCWGG	2 cut(s)	311, 574
EcoT38I	GRGCYC	2 cut(s)	234, 533
FaeI	CATG	2 cut(s)	357, 392
FaiI	YATR	7 cut(s)	71, 355, 390, 427, 429, 492, 717
FatI	CATG	2 cut(s)	353, 388
FauI	CCCGC	1 cut(s)	326
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	2 cut(s)	172, 175
FokI	GGATG	2 cut(s)	183, 389
FriOI	GRGCYC	2 cut(s)	234, 533
Fsp4HI	GCNGC	2 cut(s)	172, 175
FspBI	CTAG	3 cut(s)	201, 383, 588
GlaI	GCGC	4 cut(s)	117, 142, 195, 387
GluI	GCNGC	2 cut(s)	172, 175
HaeIII	GGCC	2 cut(s)	110, 417
HapII	CCGG	3 cut(s)	188, 206, 297
HgaI	GACGC	2 cut(s)	166, 247
HhaI	GCGC	4 cut(s)	118, 143, 196, 388
Hin1I	GRCGYC	2 cut(s)	121, 258
Hin1II	CATG	2 cut(s)	357, 392
Hin6I	GCGC	4 cut(s)	116, 141, 194, 386
HinP1I	GCGC	4 cut(s)	116, 141, 194, 386
HinfI	GANTC	2 cut(s)	557, 563
HpaII	CCGG	3 cut(s)	188, 206, 297
Hpy166II	GTNNAC	1 cut(s)	717
Hpy188I	TCNGA	3 cut(s)	423, 451, 562
Hpy188III	TCNNGA	3 cut(s)	331, 435, 554
Hpy8I	GTNNAC	1 cut(s)	717
Hpy99I	CGWCG	5 cut(s)	123, 126, 263, 266, 278
HpyAV	CCTTC	3 cut(s)	121, 220, 299
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 392, 644
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	2 cut(s)	121, 258
Hsp92II	CATG	2 cut(s)	357, 392
HspAI	GCGC	4 cut(s)	116, 141, 194, 386
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	229, 536
Lsp1109I	GCAGC	2 cut(s)	183, 186
LweI	GCATC	2 cut(s)	205, 442
MaeI	CTAG	3 cut(s)	201, 383, 588
MaeII	ACGT	1 cut(s)	121
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	4 cut(s)	235, 260, 450, 688
MhlI	GDGCHC	3 cut(s)	19, 234, 533
MluCI	AATT	4 cut(s)	279, 361, 514, 626
MlyI	GAGTC	1 cut(s)	551
MseI	TTAA	1 cut(s)	282
MspI	CCGG	3 cut(s)	188, 206, 297
MspR9I	CCNGG	2 cut(s)	313, 576
Mva1269I	GAATGC	1 cut(s)	638
MvaI	CCWGG	2 cut(s)	313, 576
MvnI	CGCG	3 cut(s)	116, 118, 143
MwoI	GCNNNNNNNGC	3 cut(s)	138, 392, 644
NdeII	GATC	1 cut(s)	357
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	357, 392
NlaIV	GGNNCC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	173, 176
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp124BI	GAGCTC	2 cut(s)	234, 533
Psp6I	CCWGG	2 cut(s)	311, 574
PspGI	CCWGG	2 cut(s)	311, 574
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	214, 315
PstNI	CAGNNNCTG	2 cut(s)	455, 511
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	2 cut(s)	234, 533
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	172, 175
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	2 cut(s)	214, 315
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	313, 576
SduI	GDGCHC	3 cut(s)	19, 234, 533
SfaNI	GCATC	2 cut(s)	205, 442
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	2 cut(s)	214, 315
Sse9I	AATT	4 cut(s)	279, 361, 514, 626
SsiI	CCGC	4 cut(s)	143, 209, 319, 339
SspMI	CTAG	3 cut(s)	201, 383, 588
SstI	GAGCTC	2 cut(s)	234, 533
StyD4I	CCNGG	2 cut(s)	311, 574
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	276
TaqII	GACCGA	2 cut(s)	27, 254
TasI	AATT	4 cut(s)	279, 361, 514, 626
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	2 cut(s)	171, 174
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	214, 315
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	660
XmiI	GTMKAC	1 cut(s)	716
XspI	CTAG	3 cut(s)	201, 383, 588
ZraI	GACGTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.