Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Forward (+)

19305640 .. 19308611

Gene Structure 2972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGATTCTTCAACACAAACTTTCCAGCACCGACCCATTTCGTTCAAATTATGGCCTGCTACTCAGAGCACCAGGATTTTGCTTGTAGAACGGATGACTAAGAATTTCTTAACTCCATCTATCTTTTCTAGAAAGTATGGCCTGCTCAGTAAAGAAGAGGCCGAGGAGGATGCCAAGAAAATTGAAGCCATAGCCTTTGCAGCTGCAGAGCAACAATTTGAGAAGGAACCATATGGTGATGGGAGTTCTGCAGTGCAGGTATATGCCCGAGAATCAAGTAAGCTTATGATGGAAGTTCTGAAAAGAGGCCCCAAAGCAAAGGAAGATGATGAGAAATCTATCTCTGTTGTTGAAAGTGTCTTTGATATCTCTGGTGGTCGCAGATCTTTTATTGATGCAGAGGAGGCTGAGGAGCTTTTCAAACCACTAAGGGAGCATGGAAACTCCTATACTAAGATATGTTTGAGCAATAGAAGCTTTGGTTTGGATGCAGCTAATGTTGCTGTGCCAATCCTATCATCCATCAAACATCAATTGAAAGAAGTGGATCTTTCAGATTTTATTGCAGGAAGGTCAGAGACAGAAGCAATTGAAGTCATGAATCTGTTTTCTTCAGCCCTGGAAGGGTGTGTATTGAGATATCTGAACCTTTCAGACAATGCCATGGGCGAGAAGGGTGTAAACTCATTTGAGTCACTCCTGAGATCACAAAGTAAACTGGAGGAACTGTATTTGATGAATGATGGTATTTCAGAAGAAGCTGCAAGAGCAGTTTCTAAGTTCATTCCATCCACGGAGAAGCTTAGAGTCCTTCATTTTCACAATAATATGACAGGAGATGAAGGGGCAATGGCCATCTCTGATATAGTGAAGCGTTCACCTGTCTTGGAGGATTTCCGTTGCTCATCTACAAGGGTGGGCTCTGAAGGTGGTGTAGCTTTAGCTGAAGCACTTGGGACTTGCACACATTTGAAGAAGCTTGATTTGCGTGATAACATGTTTGGTGTAGAATCTGGGGTTGCTTTGAGTAAAGTCATATCTGCTTTTACAGATCTTACTGAAGTTTACCTCAGTTATCTTAACTTGGAAGATGAAGGAACAGAAGCCCTTGTCAATGCTCTCAAGGATTCTGCACCTTCACTTGAAGTTCTGGAACTGGCTGGAAATGATATTACTCCCAAATCAACTGCTGCTTTGGCTTCCTGTATAGGAGCAAAACAATTCCTTACCAGGTTAATCTTGTCAGAGAATGAACTGAAGGATGAAGGTGCAATTCTGATCAGCAAAGCATTTGCAGAGGGTCATGATCAATTAACTGAGGTTGATTTGAGCTCTAATTCAATTAGAAGGGCCGGGGCAAGACTTTTGGCTCAGGCTGTTGTGAACAAACCTGGGTTCAAGTTGCTGAACATAAATGGTAATTTTATATCTGATGAAGGGATTGATGAGGTAGTGGATATGTTTAAGAATTCCCCACATCTGCTCGGGCCTTTGGATGAGAATGACCCTGAAGGAGAAGATATTGATGAGGAGGATGAAGATGAAGGTGCTGATAATGAGGATGATTTGGAATTAAGGCTCAAGGGCCTTGAAATAAAGCAAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

537

Amino Acids

58.93

Weight (kDa)

4.65

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	14 - 109	9.7e-34	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	555
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	2 cut(s)	103, 1468
AcuI	CTGAAG	6 cut(s)	597, 945, 966, 1080, 1277, 1530
AfiI	CCNNNNNNNGG	1 cut(s)	624
AflIII	ACRYGT	1 cut(s)	996
AjnI	CCWGG	4 cut(s)	71, 618, 1229, 1390
Alw21I	GWGCWC	2 cut(s)	71, 1334
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	555
Ama87I	CYCGRG	2 cut(s)	267, 1484
AoxI	GGCC	8 cut(s)	53, 139, 159, 307, 852, 1350, 1487, 1585
ApeKI	GCWGC	5 cut(s)	200, 203, 491, 761, 1190
ApoI	RAATTY	2 cut(s)	103, 1468
AspS9I	GGNCC	4 cut(s)	308, 1350, 1487, 1585
AsuC2I	CCSGG	1 cut(s)	1354
AsuHPI	GGTGA	2 cut(s)	248, 870
AvaI	CYCGRG	2 cut(s)	267, 1484
BalI	TGGCCA	1 cut(s)	854
BanII	GRGCYC	2 cut(s)	923, 1334
Bbv12I	GWGCWC	2 cut(s)	71, 1334
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	5 cut(s)	190, 212, 503, 748, 1177
BccI	CCATC	7 cut(s)	124, 233, 283, 530, 737, 796, 863
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	4 cut(s)	73, 620, 1231, 1392
BclI	TGATCA	2 cut(s)	1278, 1306
BcnI	CCSGG	1 cut(s)	1354
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	2 cut(s)	204, 249
BfuAI	ACCTGC	1 cut(s)	247
BglII	AGATCT	2 cut(s)	383, 1051
BisI	GCNGC	5 cut(s)	201, 204, 492, 762, 1191
BlsI	GCNGC	5 cut(s)	202, 205, 493, 763, 1192
Bme1390I	CCNGG	5 cut(s)	73, 620, 1231, 1354, 1392
BmeT110I	CYCGRG	2 cut(s)	267, 1484
BmgT120I	GGNCC	4 cut(s)	308, 1350, 1487, 1585
BmiI	GGNNCC	2 cut(s)	228, 310
BmrFI	CCNGG	5 cut(s)	73, 620, 1231, 1354, 1392
BmsI	GCATC	3 cut(s)	160, 385, 478
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	2 cut(s)	408, 1371
BpuEI	CTTGAG	2 cut(s)	1106, 1565
BpuMI	CCSGG	1 cut(s)	1354
BsaJI	CCNNGG	6 cut(s)	162, 618, 663, 792, 1353, 1391
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	1 cut(s)	624
Bse1I	ACTGG	2 cut(s)	723, 1161
Bse3DI	GCAATG	1 cut(s)	855
BseBI	CCWGG	4 cut(s)	73, 620, 1231, 1392
BseDI	CCNNGG	6 cut(s)	162, 618, 663, 792, 1353, 1391
BseGI	GGATG	9 cut(s)	99, 175, 493, 518, 788, 1267, 1501, 1540, 1567
BseLI	CCNNNNNNNGG	1 cut(s)	624
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	7 cut(s)	77, 160, 399, 692, 1084, 1308, 1385
BseNI	ACTGG	2 cut(s)	723, 1161
BseRI	GAGGAG	4 cut(s)	179, 416, 425, 1544
BseXI	GCAGC	5 cut(s)	190, 212, 503, 748, 1177
BsgI	GTGCAG	2 cut(s)	275, 1116
BshFI	GGCC	8 cut(s)	55, 141, 161, 309, 854, 1352, 1489, 1587
BsiHKAI	GWGCWC	2 cut(s)	71, 1334
BsiHKCI	CYCGRG	2 cut(s)	267, 1484
BsiSI	CCGG	1 cut(s)	1353
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	1 cut(s)	624
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	970
BsnI	GGCC	8 cut(s)	55, 141, 161, 309, 854, 1352, 1489, 1587
BsoBI	CYCGRG	2 cut(s)	267, 1484
Bsp1286I	GDGCHC	3 cut(s)	71, 923, 1334
Bsp143I	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
Bsp19I	CCATGG	1 cut(s)	663
BspANI	GGCC	8 cut(s)	55, 141, 161, 309, 854, 1352, 1489, 1587
BspCNI	CTCAG	7 cut(s)	76, 159, 400, 693, 1083, 1309, 1384
BspHI	TCATGA	2 cut(s)	597, 1303
BspLI	GGNNCC	2 cut(s)	228, 310
BspMAI	CTGCAG	2 cut(s)	208, 253
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	855
BsrI	ACTGG	2 cut(s)	723, 1161
BssECI	CCNNGG	6 cut(s)	162, 618, 663, 792, 1353, 1391
BssMI	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	4 cut(s)	73, 620, 1231, 1392
Bst4CI	ACNGT	1 cut(s)	729
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	57, 143
BstDSI	CCRYGG	2 cut(s)	663, 792
BstF5I	GGATG	9 cut(s)	99, 175, 493, 518, 788, 1267, 1501, 1540, 1567
BstKTI	GATC	6 cut(s)	386, 550, 707, 1054, 1281, 1309
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 404, 474, 500, 767, 985, 1196
BstNI	CCWGG	4 cut(s)	73, 620, 1231, 1392
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	5 cut(s)	71, 618, 1229, 1352, 1390
BstSFI	CTRYAG	2 cut(s)	204, 249
BstV1I	GCAGC	5 cut(s)	190, 212, 503, 748, 1177
BstX2I	RGATCY	3 cut(s)	383, 547, 1051
BstYI	RGATCY	3 cut(s)	383, 547, 1051
BsuRI	GGCC	8 cut(s)	55, 141, 161, 309, 854, 1352, 1489, 1587
BtgI	CCRYGG	2 cut(s)	663, 792
BtsCI	GGATG	9 cut(s)	99, 175, 493, 518, 788, 1267, 1501, 1540, 1567
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	57, 143
CciI	TCATGA	2 cut(s)	597, 1303
Cfr13I	GGNCC	4 cut(s)	308, 1350, 1487, 1585
CsiI	ACCWGGT	1 cut(s)	1229
CviAII	CATG	5 cut(s)	437, 598, 664, 997, 1304
DpnI	GATC	6 cut(s)	385, 549, 706, 1053, 1280, 1308
DpnII	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
EaeI	YGGCCR	1 cut(s)	852
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	1332
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	2 cut(s)	923, 1334
Eco32I	GATATC	2 cut(s)	367, 641
Eco53kI	GAGCTC	1 cut(s)	1332
Eco57I	CTGAAG	6 cut(s)	597, 945, 966, 1080, 1277, 1530
Eco88I	CYCGRG	2 cut(s)	267, 1484
EcoICRI	GAGCTC	1 cut(s)	1332
EcoO109I	RGGNCCY	2 cut(s)	308, 1585
EcoRI	GAATTC	1 cut(s)	1468
EcoRII	CCWGG	4 cut(s)	71, 618, 1229, 1390
EcoRV	GATATC	2 cut(s)	367, 641
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	2 cut(s)	923, 1334
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	5 cut(s)	440, 601, 667, 1000, 1307
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 534, 566
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	5 cut(s)	436, 597, 663, 996, 1303
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	2 cut(s)	1278, 1306
Fnu4HI	GCNGC	5 cut(s)	201, 204, 492, 762, 1191
FokI	GGATG	9 cut(s)	106, 182, 500, 505, 775, 1274, 1508, 1547, 1574
FriOI	GRGCYC	2 cut(s)	923, 1334
Fsp4HI	GCNGC	5 cut(s)	201, 204, 492, 762, 1191
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	5 cut(s)	201, 204, 492, 762, 1191
GsuI	CTGGAG	1 cut(s)	740
HaeIII	GGCC	8 cut(s)	55, 141, 161, 309, 854, 1352, 1489, 1587
HapII	CCGG	1 cut(s)	1353
Hin1II	CATG	5 cut(s)	440, 601, 667, 1000, 1307
HindIII	AAGCTT	4 cut(s)	281, 475, 800, 977
HinfI	GANTC	7 cut(s)	5, 272, 601, 692, 807, 1010, 1127
HpaII	CCGG	1 cut(s)	1353
HphI	GGTGA	2 cut(s)	248, 870
Hpy166II	GTNNAC	5 cut(s)	682, 716, 878, 1066, 1384
Hpy188III	TCNNGA	5 cut(s)	129, 598, 700, 1151, 1304
Hpy8I	GTNNAC	5 cut(s)	682, 716, 878, 1066, 1384
HpyCH4III	ACNGT	1 cut(s)	729
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 404, 474, 500, 767, 985, 1196
Hsp92II	CATG	5 cut(s)	440, 601, 667, 1000, 1307
Ksp22I	TGATCA	2 cut(s)	1278, 1306
Kzo9I	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
LmnI	GCTCC	3 cut(s)	412, 433, 1211
Lsp1109I	GCAGC	5 cut(s)	190, 212, 503, 748, 1177
LweI	GCATC	3 cut(s)	160, 385, 478
MabI	ACCWGGT	1 cut(s)	1229
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	6 cut(s)	385, 549, 706, 1053, 1280, 1308
MboI	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
MboII	GAAGA	8 cut(s)	167, 335, 603, 767, 985, 1100, 1529, 1550
MfeI	CAATTG	2 cut(s)	533, 588
MflI	RGATCY	3 cut(s)	383, 547, 1051
MhlI	GDGCHC	3 cut(s)	71, 923, 1334
MlsI	TGGCCA	1 cut(s)	854
MluNI	TGGCCA	1 cut(s)	854
MlyI	GAGTC	2 cut(s)	701, 816
Mox20I	TGGCCA	1 cut(s)	854
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	6 cut(s)	110, 1080, 1235, 1313, 1464, 1574
Msp20I	TGGCCA	1 cut(s)	854
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	1353
MspR9I	CCNGG	5 cut(s)	73, 620, 1231, 1354, 1392
MunI	CAATTG	2 cut(s)	533, 588
MvaI	CCWGG	4 cut(s)	73, 620, 1231, 1392
MwoI	GCNNNNNNNGC	7 cut(s)	200, 404, 474, 500, 767, 985, 1196
NciI	CCSGG	1 cut(s)	1354
NcoI	CCATGG	1 cut(s)	663
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
NlaIII	CATG	5 cut(s)	440, 601, 667, 1000, 1307
NlaIV	GGNNCC	2 cut(s)	228, 310
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	693
NspI	RCATGY	1 cut(s)	1000
PagI	TCATGA	2 cut(s)	597, 1303
PciI	ACATGT	1 cut(s)	996
PfeI	GAWTC	5 cut(s)	5, 272, 601, 1010, 1127
PkrI	GCNGC	5 cut(s)	202, 205, 493, 763, 1192
PleI	GAGTC	2 cut(s)	700, 815
PpsI	GAGTC	2 cut(s)	700, 815
PscI	ACATGT	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	1334
Psp6I	CCWGG	4 cut(s)	71, 618, 1229, 1390
PspGI	CCWGG	4 cut(s)	71, 618, 1229, 1390
PspN4I	GGNNCC	2 cut(s)	228, 310
PspPI	GGNCC	4 cut(s)	308, 1350, 1487, 1585
PstI	CTGCAG	2 cut(s)	208, 253
PsuI	RGATCY	3 cut(s)	383, 547, 1051
PvuII	CAGCTG	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	1334
SaqAI	TTAA	6 cut(s)	110, 1080, 1235, 1313, 1464, 1574
SatI	GCNGC	5 cut(s)	201, 204, 492, 762, 1191
Sau3AI	GATC	6 cut(s)	383, 547, 704, 1051, 1278, 1306
Sau96I	GGNCC	4 cut(s)	308, 1350, 1487, 1585
SchI	GAGTC	2 cut(s)	701, 816
ScrFI	CCNGG	5 cut(s)	73, 620, 1231, 1354, 1392
SduI	GDGCHC	3 cut(s)	71, 923, 1334
SexAI	ACCWGGT	1 cut(s)	1229
SfaNI	GCATC	3 cut(s)	160, 385, 478
SfcI	CTRYAG	2 cut(s)	204, 249
SmlI	CTYRAG	2 cut(s)	1121, 1580
SmoI	CTYRAG	2 cut(s)	1121, 1580
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	1334
StyD4I	CCNGG	5 cut(s)	71, 618, 1229, 1352, 1390
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	729
TfiI	GAWTC	5 cut(s)	5, 272, 601, 1010, 1127
Tru1I	TTAA	6 cut(s)	110, 1080, 1235, 1313, 1464, 1574
Tru9I	TTAA	6 cut(s)	110, 1080, 1235, 1313, 1464, 1574
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	693
TseI	GCWGC	5 cut(s)	200, 203, 491, 761, 1190
Tsp45I	GTSAC	1 cut(s)	693
TspGWI	ACGGA	3 cut(s)	106, 809, 887
TspRI	CASTG	1 cut(s)	258
XapI	RAATTY	2 cut(s)	103, 1468
XbaI	TCTAGA	1 cut(s)	128
XceI	RCATGY	1 cut(s)	1000
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.