Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005840.1

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Reverse (-)

60802 .. 61161

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005840.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgggattggctagaaatgatattacagtcaaatcaactgcttctatagcttcttgtatagcaggaaagcaactcctcaccaagttaatcttgtcagagaatgaactaaaggatgaacgtgcaattctggccagcaaagcattatcaaagggtcatggtcagttaattgaggttaatttgagctctaattcaattggaaggcccagtgcaagacatttagcagaggttgttgtgaacaaacctaggttcaagtcgctgaacataaatggtgacttcatatctaatgatgaaattgatgatgtagtggatgttcttaagattttcccacatctgcttgggcctttggatgagaatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

119

Amino Acids

12.89

Weight (kDa)

5.89

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	129
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	192, 250
AluBI	AGCT	2 cut(s)	50, 183
AluI	AGCT	2 cut(s)	50, 183
Alw21I	GWGCWC	1 cut(s)	185
AoxI	GGCC	3 cut(s)	129, 200, 338
AspA2I	CCTAGG	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	201, 338
AsuHPI	GGTGA	2 cut(s)	70, 281
AvrII	CCTAGG	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	12, 243
BfmI	CTRYAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	314
BlnI	CCTAGG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	201, 338
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	3 cut(s)	118, 313, 352
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	131, 202, 340
BsiHKAI	GWGCWC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	131, 202, 340
Bsp1286I	GDGCHC	1 cut(s)	185
BspANI	GGCC	3 cut(s)	131, 202, 340
BspTI	CTTAAG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	28
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	118, 313, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 128, 137
BstSFI	CTRYAG	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	131, 202, 340
BtsCI	GGATG	3 cut(s)	118, 313, 352
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	201, 338
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	6 cut(s)	11, 50, 131, 183, 202, 340
CviKI_1	RGCY	6 cut(s)	11, 50, 131, 183, 202, 340
EaeI	YGGCCR	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	1 cut(s)	158
FaiI	YATR	5 cut(s)	47, 59, 156, 263, 278
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	1 cut(s)	154
FokI	GGATG	2 cut(s)	125, 320
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	12, 243
HaeIII	GGCC	3 cut(s)	131, 202, 340
Hin1II	CATG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	70, 281
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	122, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 128, 137
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	158
LpnPI	CCDG	4 cut(s)	48, 113, 145, 217
MaeI	CTAG	2 cut(s)	12, 243
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	269
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	6 cut(s)	123, 165, 175, 187, 192, 291
MluNI	TGGCCA	1 cut(s)	131
MnlI	CCTC	3 cut(s)	86, 163, 217
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	4 cut(s)	86, 164, 174, 315
Msp20I	TGGCCA	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	47, 128, 137
NlaIII	CATG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	185
PspPI	GGNCC	2 cut(s)	201, 338
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	86, 164, 174, 315
Sau96I	GGNCC	2 cut(s)	201, 338
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	7 cut(s)	52, 121, 174, 185, 228, 244, 248
SfcI	CTRYAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	6 cut(s)	123, 165, 175, 187, 192, 291
SspMI	CTAG	2 cut(s)	12, 243
SstI	GAGCTC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	121
TasI	AATT	6 cut(s)	123, 165, 175, 187, 192, 291
Tru1I	TTAA	4 cut(s)	86, 164, 174, 315
Tru9I	TTAA	4 cut(s)	86, 164, 174, 315
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	117, 129, 265, 303
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	314
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	2 cut(s)	12, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.