Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Reverse (-)

15897186 .. 15898760

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGTCAATCAAATTATGGCCTGCTACTCAGAGTACCAGAATATTGCTTGTAGAACGAATGACCAAGAATTTCATAACTCCATCCATTTTCTCTAGAAAGTACGGCCTGCTTAGTAAAGAAGAGGCCGAGGAAGATGCCAGGAAAATAGAAGCCTTTGCCTTTGCAGCTGCAGAGCAACAATTTGAGAAGGAACCATATGGTGATGGAAGTTCTGCAGTGCAGGTATATGCCAGAGAGTCAAGTAAGCTTATGCTGGAAGTTCTGAAAAGAGGGCCCAAAGCAAAGGAAGATGATGAGAAATCTATTCCTGCTTTTAACAGTGTGTTTGATATCTCTGGTGGCCGCAGATCTTTTATTGATGCAGAGGAGGCTGAGGAGCTTTTCAAACCACTAAGGGAGCTTGGAAACTCCTATACTAAGATATGTTTGAGCAATAGAAGCTTTGGTTTGGATGCAGCCTGTGTTGCTGTGCCAATCTTATCATCCATCAAACATCAATTGAAAGAAGTGGATCTGTCAGATTTTATTGCAGGAAGGTCAGAGACTGAAGCTATTGAAGTCATGAATCTGTTTTCTTCAGCCCTGGAAGGATGTGAATTGAGGTATCTGAACCTTTCAGACAATGCCATGGGTGAGAAAGGTGTAAATGCATTTGAGTCACTGCTGAGATCACAAAATAATTTGGAGGAACTTTATTTGATGAATGATGGTATTTCAGAAGAAGCTGCAAGAGCAGTTTCTAAGTTCATTCCATCCACTGGGAAGCTTAGAGTCCTTCATTTTCACAATAATATGACAGGAGATGAAGGAGCAATTGCCATCTCTGATATGGTGAAGCGTTCACCTGTCTTGGAGGATTTCCGTTGCTCATCTACAAGGGTGGGCTCTGAAGGCGGTGTAGCTTTAGCTGAAGCACTCGGGACTTGCACACATTTGAAGAAGCTCGATTTGCGTGACAACATGTTCGGTGTAGAATCTGGGGTTGCTTTGAGTAAAGTCCTATCTGCTTTTACAGAACTTACCGAAATTTTCCTCAGTTATCTTAACTTGGAAGATGAAGGAACAGAAGCCCTTGCCAATGCTCTCAAGGATTCTGCACCTTTGCTTGAAGTTCTGGAATTGGCCGGAAATGATATTACAGCCAAATCAACTGCTGCTTTGGCTTCCTGTATAGCAGCAAAACAATTCCTTACTAGGTTGATATTGTCAGAGAATGAACTGAAGGATGAAGGTGCAATTATGATCAGCAAAGCATTGGCAGAGGGTCATGGTCAGTTAATTGAGGTTGATTTGAGCTCTAATTCAATTAGAAGGGTTGGGGCGAGACTTTTGGCTCAGGCTGTTGTGAATAAACCTGGGTTTAAGTCACTGAACATAAATGGTAACTTCATATCTGATGAAGGGATTGATGAGGTAGTGGATATGTTTAAGAATTCCCCACATCTGCTTGGGCCTTTGGATGAGAATGACCCTGAAGGGGAAGATCTTGATGAAGAGGATGAAGACGAAGGTGCTGACAACGAGGATGAATTGGAATTGAGGCTCAAGGTCCTTGAACTAAAGCAAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

524

Amino Acids

57.47

Weight (kDa)

4.62

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	2 - 97	4.1e-34	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccB7I	CCANNNNNTGG	1 cut(s)	758
AciI	CCGC	2 cut(s)	343, 894
AclWI	GGATC	1 cut(s)	519
AcoI	YGGCCR	2 cut(s)	340, 1122
AcsI	RAATTY	3 cut(s)	67, 1026, 1432
AcuI	CTGAAG	6 cut(s)	561, 567, 909, 930, 1241, 1494
AfaI	GTAC	2 cut(s)	34, 101
AfiI	CCNNNNNNNGG	2 cut(s)	758, 1477
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	7 cut(s)	385, 502, 557, 937, 1109, 1305, 1556
AjnI	CCWGG	3 cut(s)	137, 582, 1354
Alw21I	GWGCWC	1 cut(s)	1298
Alw26I	GTCTC	2 cut(s)	536, 1318
AlwI	GGATC	1 cut(s)	519
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	7 cut(s)	17, 103, 123, 272, 340, 1122, 1451
ApaI	GGGCCC	1 cut(s)	276
ApeKI	GCWGC	6 cut(s)	164, 167, 455, 725, 1154, 1175
ApoI	RAATTY	3 cut(s)	67, 1026, 1432
ArsI	GACNNNNNNTTYG	2 cut(s)	947, 979
AspS9I	GGNCC	4 cut(s)	272, 273, 1451, 1549
AsuHPI	GGTGA	4 cut(s)	212, 644, 834, 844
AvaI	CYCGRG	1 cut(s)	917
AvaII	GGWCC	1 cut(s)	1549
BaeGI	GKGCMC	1 cut(s)	276
BanII	GRGCYC	3 cut(s)	276, 887, 1298
BbsI	GAAGAC	1 cut(s)	1509
Bbv12I	GWGCWC	1 cut(s)	1298
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	154, 176, 467, 712, 1141, 1187
BccI	CCATC	6 cut(s)	88, 197, 494, 701, 760, 827
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	3 cut(s)	139, 584, 1356
BclI	TGATCA	1 cut(s)	1242
BcoDI	GTCTC	2 cut(s)	536, 1318
BfaI	CTAG	2 cut(s)	93, 1194
BfmI	CTRYAG	2 cut(s)	168, 213
BfuAI	ACCTGC	1 cut(s)	211
BglII	AGATCT	2 cut(s)	347, 1483
BisI	GCNGC	7 cut(s)	165, 168, 343, 456, 726, 1155, 1176
BlsI	GCNGC	7 cut(s)	166, 169, 344, 457, 727, 1156, 1177
Bme1390I	CCNGG	3 cut(s)	139, 584, 1356
Bme18I	GGWCC	1 cut(s)	1549
BmeT110I	CYCGRG	1 cut(s)	917
BmgT120I	GGNCC	4 cut(s)	272, 273, 1451, 1549
BmiI	GGNNCC	2 cut(s)	192, 274
BmrFI	CCNGG	3 cut(s)	139, 584, 1356
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	3 cut(s)	124, 349, 442
BmuI	ACTGGG	1 cut(s)	768
BpiI	GAAGAC	1 cut(s)	1509
Bpu10I	CCTNAGC	2 cut(s)	372, 1335
BpuEI	CTTGAG	2 cut(s)	1070, 1529
BsaJI	CCNNGG	4 cut(s)	126, 582, 627, 1355
Bsc4I	CCNNNNNNNGG	2 cut(s)	758, 1477
Bse1I	ACTGG	1 cut(s)	763
BseBI	CCWGG	3 cut(s)	139, 584, 1356
BseDI	CCNNGG	4 cut(s)	126, 582, 627, 1355
BseGI	GGATG	9 cut(s)	80, 457, 482, 596, 752, 1231, 1465, 1504, 1531
BseLI	CCNNNNNNNGG	2 cut(s)	758, 1477
BseMII	CTCAG	5 cut(s)	41, 363, 656, 1048, 1349
BseNI	ACTGG	1 cut(s)	763
BseRI	GAGGAG	2 cut(s)	380, 389
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	6 cut(s)	154, 176, 467, 712, 1141, 1187
BsgI	GTGCAG	2 cut(s)	239, 1080
BshFI	GGCC	7 cut(s)	19, 105, 125, 274, 342, 1124, 1453
BsiHKAI	GWGCWC	1 cut(s)	1298
BsiHKCI	CYCGRG	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	1125
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	2 cut(s)	758, 1477
BsmAI	GTCTC	2 cut(s)	536, 1318
BsmFI	GGGAC	1 cut(s)	934
BsnI	GGCC	7 cut(s)	19, 105, 125, 274, 342, 1124, 1453
BsoBI	CYCGRG	1 cut(s)	917
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	276, 887, 1298
Bsp143I	GATC	5 cut(s)	347, 511, 668, 1242, 1483
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	2 cut(s)	343, 894
BspANI	GGCC	7 cut(s)	19, 105, 125, 274, 342, 1124, 1453
BspCNI	CTCAG	5 cut(s)	40, 364, 657, 1047, 1348
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	192, 274
BspMAI	CTGCAG	2 cut(s)	172, 217
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	763
BssECI	CCNNGG	4 cut(s)	126, 582, 627, 1355
BssMI	GATC	5 cut(s)	347, 511, 668, 1242, 1483
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	3 cut(s)	139, 584, 1356
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	114, 1488
BstC8I	GCNNGC	2 cut(s)	21, 107
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	9 cut(s)	80, 457, 482, 596, 752, 1231, 1465, 1504, 1531
BstKTI	GATC	5 cut(s)	350, 514, 671, 1245, 1486
BstMAI	GTCTC	2 cut(s)	536, 1318
BstMBI	GATC	5 cut(s)	347, 511, 668, 1242, 1483
BstMWI	GCNNNNNNNGC	8 cut(s)	164, 368, 438, 464, 731, 891, 949, 1160
BstNI	CCWGG	3 cut(s)	139, 584, 1356
BstNSI	RCATGY	1 cut(s)	964
BstSCI	CCNGG	3 cut(s)	137, 582, 1354
BstSFI	CTRYAG	2 cut(s)	168, 213
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	6 cut(s)	154, 176, 467, 712, 1141, 1187
BstV2I	GAAGAC	1 cut(s)	1509
BstX2I	RGATCY	3 cut(s)	347, 511, 1483
BstYI	RGATCY	3 cut(s)	347, 511, 1483
BsuRI	GGCC	7 cut(s)	19, 105, 125, 274, 342, 1124, 1453
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	9 cut(s)	80, 457, 482, 596, 752, 1231, 1465, 1504, 1531
BtsI	GCAGTG	2 cut(s)	222, 659
BtsIMutI	CAGTG	5 cut(s)	222, 325, 659, 756, 1367
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	21, 107
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	1 cut(s)	561
Cfr13I	GGNCC	4 cut(s)	272, 273, 1451, 1549
Csp6I	GTAC	2 cut(s)	33, 100
CviAII	CATG	4 cut(s)	562, 628, 961, 1268
CviQI	GTAC	2 cut(s)	33, 100
DpnI	GATC	5 cut(s)	349, 513, 670, 1244, 1485
DpnII	GATC	5 cut(s)	347, 511, 668, 1242, 1483
EaeI	YGGCCR	2 cut(s)	340, 1122
Eam1104I	CTCTTC	2 cut(s)	114, 1488
EarI	CTCTTC	2 cut(s)	114, 1488
Ecl136II	GAGCTC	1 cut(s)	1296
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	3 cut(s)	276, 887, 1298
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	1549
Eco53kI	GAGCTC	1 cut(s)	1296
Eco57I	CTGAAG	6 cut(s)	561, 567, 909, 930, 1241, 1494
Eco88I	CYCGRG	1 cut(s)	917
EcoICRI	GAGCTC	1 cut(s)	1296
EcoO109I	RGGNCCY	2 cut(s)	272, 1549
EcoRI	GAATTC	1 cut(s)	1432
EcoRII	CCWGG	3 cut(s)	137, 582, 1354
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	3 cut(s)	276, 887, 1298
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	4 cut(s)	565, 631, 964, 1271
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	4 cut(s)	561, 627, 960, 1267
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	1242
Fnu4HI	GCNGC	7 cut(s)	165, 168, 343, 456, 726, 1155, 1176
FokI	GGATG	9 cut(s)	67, 464, 469, 603, 739, 1238, 1472, 1511, 1538
FriOI	GRGCYC	3 cut(s)	276, 887, 1298
Fsp4HI	GCNGC	7 cut(s)	165, 168, 343, 456, 726, 1155, 1176
FspBI	CTAG	2 cut(s)	93, 1194
GluI	GCNGC	7 cut(s)	165, 168, 343, 456, 726, 1155, 1176
HaeIII	GGCC	7 cut(s)	19, 105, 125, 274, 342, 1124, 1453
HapII	CCGG	1 cut(s)	1125
Hin1II	CATG	4 cut(s)	565, 631, 964, 1271
HindIII	AAGCTT	3 cut(s)	245, 439, 764
HinfI	GANTC	6 cut(s)	236, 565, 656, 771, 974, 1091
HpaII	CCGG	1 cut(s)	1125
HphI	GGTGA	4 cut(s)	212, 644, 834, 844
Hpy166II	GTNNAC	1 cut(s)	842
Hpy188III	TCNNGA	5 cut(s)	93, 562, 919, 1115, 1487
Hpy8I	GTNNAC	1 cut(s)	842
HpyCH4III	ACNGT	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	164, 368, 438, 464, 731, 891, 949, 1160
Hsp92II	CATG	4 cut(s)	565, 631, 964, 1271
Ksp22I	TGATCA	1 cut(s)	1242
Kzo9I	GATC	5 cut(s)	347, 511, 668, 1242, 1483
LmnI	GCTCC	3 cut(s)	376, 397, 809
Lsp1109I	GCAGC	6 cut(s)	154, 176, 467, 712, 1141, 1187
LweI	GCATC	3 cut(s)	124, 349, 442
MaeI	CTAG	2 cut(s)	93, 1194
MaeIII	GTNAC	4 cut(s)	657, 953, 1365, 1382
MalI	GATC	5 cut(s)	349, 513, 670, 1244, 1485
MboI	GATC	5 cut(s)	347, 511, 668, 1242, 1483
MfeI	CAATTG	2 cut(s)	497, 813
MflI	RGATCY	3 cut(s)	347, 511, 1483
MhlI	GDGCHC	3 cut(s)	276, 887, 1298
MlyI	GAGTC	3 cut(s)	245, 665, 780
Mph1103I	ATGCAT	1 cut(s)	652
MseI	TTAA	5 cut(s)	315, 1044, 1277, 1362, 1428
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	1125
MspR9I	CCNGG	3 cut(s)	139, 584, 1356
MunI	CAATTG	2 cut(s)	497, 813
MvaI	CCWGG	3 cut(s)	139, 584, 1356
MwoI	GCNNNNNNNGC	8 cut(s)	164, 368, 438, 464, 731, 891, 949, 1160
NcoI	CCATGG	1 cut(s)	627
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	5 cut(s)	347, 511, 668, 1242, 1483
NlaIII	CATG	4 cut(s)	565, 631, 964, 1271
NlaIV	GGNNCC	2 cut(s)	192, 274
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	3 cut(s)	657, 953, 1365
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	1 cut(s)	964
PagI	TCATGA	1 cut(s)	561
PciI	ACATGT	1 cut(s)	960
PfeI	GAWTC	3 cut(s)	565, 974, 1091
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	7 cut(s)	166, 169, 344, 457, 727, 1156, 1177
PleI	GAGTC	3 cut(s)	244, 664, 779
PpsI	GAGTC	3 cut(s)	244, 664, 779
PpuMI	RGGWCCY	1 cut(s)	1549
PscI	ACATGT	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	1298
Psp5II	RGGWCCY	1 cut(s)	1549
Psp6I	CCWGG	3 cut(s)	137, 582, 1354
PspGI	CCWGG	3 cut(s)	137, 582, 1354
PspN4I	GGNNCC	2 cut(s)	192, 274
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	4 cut(s)	272, 273, 1451, 1549
PspPPI	RGGWCCY	1 cut(s)	1549
PstI	CTGCAG	2 cut(s)	172, 217
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	3 cut(s)	347, 511, 1483
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	34, 101
RsaNI	GTAC	2 cut(s)	33, 100
SacI	GAGCTC	1 cut(s)	1298
SaqAI	TTAA	5 cut(s)	315, 1044, 1277, 1362, 1428
SatI	GCNGC	7 cut(s)	165, 168, 343, 456, 726, 1155, 1176
Sau3AI	GATC	5 cut(s)	347, 511, 668, 1242, 1483
Sau96I	GGNCC	4 cut(s)	272, 273, 1451, 1549
SchI	GAGTC	3 cut(s)	245, 665, 780
ScrFI	CCNGG	3 cut(s)	139, 584, 1356
SduI	GDGCHC	3 cut(s)	276, 887, 1298
SfaNI	GCATC	3 cut(s)	124, 349, 442
SfcI	CTRYAG	2 cut(s)	168, 213
SinI	GGWCC	1 cut(s)	1549
SmlI	CTYRAG	2 cut(s)	1085, 1544
SmoI	CTYRAG	2 cut(s)	1085, 1544
SsiI	CCGC	2 cut(s)	343, 894
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	2 cut(s)	93, 1194
SstI	GAGCTC	1 cut(s)	1298
StyD4I	CCNGG	3 cut(s)	137, 582, 1354
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	945
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	565, 974, 1091
Tru1I	TTAA	5 cut(s)	315, 1044, 1277, 1362, 1428
Tru9I	TTAA	5 cut(s)	315, 1044, 1277, 1362, 1428
TscAI	CASTG	5 cut(s)	222, 325, 666, 763, 1374
TseFI	GTSAC	3 cut(s)	657, 953, 1365
TseI	GCWGC	6 cut(s)	164, 167, 455, 725, 1154, 1175
Tsp45I	GTSAC	3 cut(s)	657, 953, 1365
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	5 cut(s)	222, 325, 666, 763, 1374
Van91I	CCANNNNNTGG	1 cut(s)	758
VpaK11BI	GGWCC	1 cut(s)	1549
XapI	RAATTY	3 cut(s)	67, 1026, 1432
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XspI	CTAG	2 cut(s)	93, 1194
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.