Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Forward (+)

34723712 .. 34725981

Gene Structure 2270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0217100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAATACGCTCAACAGGTTGAGGACCCTCGCATTGCGTTGTTCAATATTCACTAAACCCTCATCGGAATCACACTCCTCTTTGCAAAACCAGTTACTTTACAGACGACACATTTCCACCACCAGAACCACCACCTCAGAAATCCCGGCGAATTTCACCGCGAATTACCTCATAAAATCATGTGGGTTCTCACCGGAAGCTGCGGTTTCAGTCTCCAACAAGTTCAAACTGTCATCCCAAGAGAGAGCAGACTCTGTTCTGGCGTTTCTGAGAACCCATGGAGGACTCTCCGAAGCCCAGATCTCAAAGCTTCTCAGGTCATACCCAGGATACCTTGCAGCGGCCTGTCCCGAAAAGACCCTTCTGCCCAAGATTGAGTTTTACAGATCCCTTGGAGTTTCAAAGGAGAACGTCGCCAGAACTGTGTCTTCAAATCCACTGCTTTTGTCTGTTAGCTTGGAGAATCGGATCATACCAACTTATGATTATCTCAAGAGCTTTCGGCTTTCAAAGAAGAACATTGCGTCGGTTTTCAAGAGCGGCGCTAGGATATTCTTGGAAGGTCACACCAAGAATGTGGAGCCGAATCTTGGGCTGTTGAAAGAGTTAGGTATGTCCCAAGAATGCATTTCTAAGTTGCTAACTCATTTTACTCATTATCTGATGCTAAAGCATCAGAGGTTTCGTCAAGTTGTGGATGATGTTATGGAAGTGGGTTTTAGTATGGATAAGTACACAGCTTTCGGGACGGCAATCCGAGCATTTGGGGGGAAGGATAGTAAGTTGAAAATGAGTCAATGTAGAGAAGTGTATATGACCAAGTGGGGTTGGACTGAGAATGATGTTCTGTCTGCGTTGAAGAAGCATCCCCGGTGTATGATTCTGTCGGAGAAGAAGATAGAGCAAGTAATGGATTTTATAGTGAACAAGATGGGATTGGTGTCAGGGAGAACAATGGCCAGATACCCTCAGATTTGGACTTGCAGTTTCGACAAGAAAGTGATCCCGAGGTGTATGGTTTTTAAAGTTTTGTTGCTGAGAGGATTGGTGAATGAAAACTGGAGTTTGGGTTATGTCGTGAATATTAGTGAGGACAAGTTCTTGGAGAGGTTTGTAGTAAAGTACTTTGACCAAGTACCGCAATTGATGAGTGTGTATCAAGGGAAAGTGGATATCCAGGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

395

Amino Acids

45.04

Weight (kDa)

9.66

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	87 - 243	5.2e-20	mTERF
mTERF	PF02536	271 - 368	5.2e-12	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	540
AccII	CGCG	1 cut(s)	161
AciI	CCGC	5 cut(s)	159, 203, 341, 540, 1139
AclWI	GGATC	3 cut(s)	381, 476, 997
AcoI	YGGCCR	1 cut(s)	957
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	3 cut(s)	734, 1124, 1137
AfiI	CCNNNNNNNGG	2 cut(s)	340, 590
AgsI	TTSAA	9 cut(s)	45, 226, 402, 432, 510, 535, 601, 787, 859
AjnI	CCWGG	2 cut(s)	325, 1176
AluBI	AGCT	5 cut(s)	200, 310, 456, 498, 740
AluI	AGCT	5 cut(s)	200, 310, 456, 498, 740
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	381, 476, 997
AlwNI	CAGNNNCTG	2 cut(s)	254, 1183
Ama87I	CYCGRG	1 cut(s)	1006
AoxI	GGCC	2 cut(s)	342, 957
ApeKI	GCWGC	2 cut(s)	200, 338
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	2 cut(s)	146, 871
AsuHPI	GGTGA	3 cut(s)	148, 183, 1060
AvaI	CYCGRG	1 cut(s)	1006
AvaII	GGWCC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	959
BbsI	GAAGAC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	187, 350
BccI	CCATC	1 cut(s)	925
BceAI	ACGGC	1 cut(s)	765
BciT130I	CCWGG	2 cut(s)	327, 1178
BciVI	GTATCC	1 cut(s)	323
BcnI	CCSGG	2 cut(s)	146, 871
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	4 cut(s)	201, 339, 342, 541
BlsI	GCNGC	4 cut(s)	202, 340, 343, 542
BmcAI	AGTACT	1 cut(s)	1124
Bme1390I	CCNGG	4 cut(s)	146, 327, 871, 1178
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	1006
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	26, 582
BmrFI	CCNGG	4 cut(s)	146, 327, 871, 1178
BmsI	GCATC	3 cut(s)	654, 682, 874
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	1081
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	2 cut(s)	146, 871
BsaJI	CCNNGG	5 cut(s)	277, 325, 391, 869, 1007
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	1054, 1084
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 590
Bse1I	ACTGG	2 cut(s)	91, 1064
Bse3DI	GCAATG	2 cut(s)	32, 519
BseBI	CCWGG	2 cut(s)	327, 1178
BseDI	CCNNGG	5 cut(s)	277, 325, 391, 869, 1007
BseGI	GGATG	3 cut(s)	233, 703, 865
BseLI	CCNNNNNNNGG	2 cut(s)	340, 590
BseMI	GCAATG	2 cut(s)	32, 519
BseMII	CTCAG	6 cut(s)	150, 260, 328, 825, 983, 1028
BseNI	ACTGG	2 cut(s)	91, 1064
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	187, 350
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	344, 959
BsiHKCI	CYCGRG	1 cut(s)	1006
BsiSI	CCGG	3 cut(s)	146, 194, 871
BslFI	GGGAC	3 cut(s)	333, 601, 760
BslI	CCNNNNNNNGG	2 cut(s)	340, 590
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	3 cut(s)	333, 601, 760
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	344, 959
BsoBI	CYCGRG	1 cut(s)	1006
Bsp143I	GATC	5 cut(s)	300, 386, 468, 1002, 1180
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	5 cut(s)	159, 203, 341, 540, 1139
BspANI	GGCC	2 cut(s)	344, 959
BspCNI	CTCAG	6 cut(s)	149, 261, 327, 826, 982, 1029
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	26, 582
BspPI	GGATC	3 cut(s)	381, 476, 997
BsrBI	CCGCTC	1 cut(s)	540
BsrDI	GCAATG	2 cut(s)	32, 519
BsrI	ACTGG	2 cut(s)	91, 1064
BssECI	CCNNGG	5 cut(s)	277, 325, 391, 869, 1007
BssMI	GATC	5 cut(s)	300, 386, 468, 1002, 1180
BssT1I	CCWWGG	2 cut(s)	277, 391
Bst2UI	CCWGG	2 cut(s)	327, 1178
Bst4CI	ACNGT	2 cut(s)	231, 424
BstDEI	CTNAG	7 cut(s)	136, 269, 314, 633, 834, 969, 1037
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	233, 703, 865
BstFNI	CGCG	1 cut(s)	161
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	5 cut(s)	303, 389, 471, 1005, 1183
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	5 cut(s)	300, 386, 468, 1002, 1180
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	2 cut(s)	327, 1178
BstSCI	CCNGG	4 cut(s)	144, 325, 869, 1176
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	187, 350
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	3 cut(s)	300, 386, 1180
BstXI	CCANNNNNNTGG	1 cut(s)	577
BstYI	RGATCY	3 cut(s)	300, 386, 1180
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	344, 959
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	233, 703, 865
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	437
CaiI	CAGNNNCTG	2 cut(s)	254, 1183
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	24
CseI	GACGC	1 cut(s)	513
Csp6I	GTAC	3 cut(s)	733, 1123, 1136
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	2 cut(s)	180, 278
CviQI	GTAC	3 cut(s)	733, 1123, 1136
DdeI	CTNAG	7 cut(s)	136, 269, 314, 633, 834, 969, 1037
DpnI	GATC	5 cut(s)	302, 388, 470, 1004, 1182
DpnII	GATC	5 cut(s)	300, 386, 468, 1002, 1180
DraI	TTTAAA	1 cut(s)	1024
EaeI	YGGCCR	1 cut(s)	957
Eco130I	CCWWGG	2 cut(s)	277, 391
Eco32I	GATATC	1 cut(s)	1174
Eco47I	GGWCC	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	1006
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	325, 1176
EcoRV	GATATC	1 cut(s)	1174
EcoT14I	CCWWGG	2 cut(s)	277, 391
EcoT22I	ATGCAT	1 cut(s)	629
ErhI	CCWWGG	2 cut(s)	277, 391
FaeI	CATG	2 cut(s)	183, 281
FaqI	GGGAC	3 cut(s)	333, 601, 760
FatI	CATG	2 cut(s)	179, 277
Fnu4HI	GCNGC	4 cut(s)	201, 339, 342, 541
FokI	GGATG	3 cut(s)	220, 710, 852
Fsp4HI	GCNGC	4 cut(s)	201, 339, 342, 541
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	4 cut(s)	201, 339, 342, 541
GsuI	CTGGAG	1 cut(s)	1081
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	344, 959
HapII	CCGG	3 cut(s)	146, 194, 871
HgaI	GACGC	1 cut(s)	513
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	183, 281
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	7 cut(s)	68, 251, 285, 463, 586, 793, 880
HpaII	CCGG	3 cut(s)	146, 194, 871
HphI	GGTGA	3 cut(s)	148, 183, 1060
Hpy166II	GTNNAC	2 cut(s)	735, 925
Hpy188III	TCNNGA	6 cut(s)	350, 493, 535, 745, 1006, 1078
Hpy8I	GTNNAC	2 cut(s)	735, 925
Hpy99I	CGWCG	2 cut(s)	416, 529
HpyAV	CCTTC	3 cut(s)	371, 554, 766
HpyCH4III	ACNGT	2 cut(s)	231, 424
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	4 cut(s)	85, 338, 627, 984
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	7 cut(s)	136, 269, 314, 633, 834, 969, 1037
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	183, 281
HspAI	GCGC	1 cut(s)	543
Kzo9I	GATC	5 cut(s)	300, 386, 468, 1002, 1180
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	2 cut(s)	187, 350
LweI	GCATC	3 cut(s)	654, 682, 874
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	93, 563
MalI	GATC	5 cut(s)	302, 388, 470, 1004, 1182
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	5 cut(s)	300, 386, 468, 1002, 1180
MboII	GAAGA	5 cut(s)	420, 526, 871, 904, 907
MfeI	CAATTG	1 cut(s)	1142
MflI	RGATCY	3 cut(s)	300, 386, 1180
MlsI	TGGCCA	1 cut(s)	959
MluCI	AATT	3 cut(s)	151, 163, 1142
MluNI	TGGCCA	1 cut(s)	959
MlyI	GAGTC	3 cut(s)	245, 279, 802
MmeI	TCCRAC	3 cut(s)	240, 809, 867
Mox20I	TGGCCA	1 cut(s)	959
Mph1103I	ATGCAT	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	959
MseI	TTAA	1 cut(s)	1023
Msp20I	TGGCCA	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	3 cut(s)	146, 194, 871
MspR9I	CCNGG	4 cut(s)	146, 327, 871, 1178
MunI	CAATTG	1 cut(s)	1142
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	2 cut(s)	327, 1178
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	758
NciI	CCSGG	2 cut(s)	146, 871
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	5 cut(s)	300, 386, 468, 1002, 1180
NlaIII	CATG	2 cut(s)	183, 281
NlaIV	GGNNCC	2 cut(s)	26, 582
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	629
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	68, 463, 586, 880
PfoI	TCCNGGA	1 cut(s)	1176
PkrI	GCNGC	4 cut(s)	202, 340, 343, 542
PleI	GAGTC	3 cut(s)	245, 279, 801
PpsI	GAGTC	3 cut(s)	245, 279, 801
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	325, 1176
PspGI	CCWGG	2 cut(s)	325, 1176
PspN4I	GGNNCC	2 cut(s)	26, 582
PspPI	GGNCC	1 cut(s)	24
PspPPI	RGGWCCY	1 cut(s)	24
PstNI	CAGNNNCTG	2 cut(s)	254, 1183
PsuI	RGATCY	3 cut(s)	300, 386, 1180
RsaI	GTAC	3 cut(s)	734, 1124, 1137
RsaNI	GTAC	3 cut(s)	733, 1123, 1136
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	4 cut(s)	201, 339, 342, 541
Sau3AI	GATC	5 cut(s)	300, 386, 468, 1002, 1180
Sau96I	GGNCC	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	1124
SchI	GAGTC	3 cut(s)	245, 279, 802
ScrFI	CCNGG	4 cut(s)	146, 327, 871, 1178
SfaNI	GCATC	3 cut(s)	654, 682, 874
SinI	GGWCC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	151, 163, 1142
SsiI	CCGC	5 cut(s)	159, 203, 341, 540, 1139
SspI	AATATT	2 cut(s)	48, 1084
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	4 cut(s)	144, 325, 869, 1176
StyI	CCWWGG	2 cut(s)	277, 391
TaaI	ACNGT	2 cut(s)	231, 424
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	990
TasI	AATT	3 cut(s)	151, 163, 1142
TatI	WGTACW	2 cut(s)	732, 1122
TauI	GCSGC	2 cut(s)	344, 543
TfiI	GAWTC	4 cut(s)	68, 463, 586, 880
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	2 cut(s)	200, 338
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	17, 1068
TspRI	CASTG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	151
XspI	CTAG	1 cut(s)	546
ZrmI	AGTACT	1 cut(s)	1124
Zsp2I	ATGCAT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.