Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Reverse (-)

15764405 .. 15767178

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012153

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

ATGAGATTAGTGCCAAGCTCAAGAAACAATCAAACTAATTTTTCTTTACGGCCCAAAATCGAAGGGTTTACTATCTCGTCCTCTTCGCCAATTTCTTCAGGAGATCATTTTGACATGGATTCTACAACACAAACTTTCCAGCACCGCCCGGTGTCAATCAAATTATGGCCTGCTACTCAGAGTACCAGAATATTGCTTGTAGAAAGAATGACCAAGAATTTCATAACTCCATCCATTTTCTCTAGAAAGTATGGCCTGCTTAGTAAAGAAGAGGCCGAGGAAGATGCCAGGAAAATAGAAGCCTTTGCCTTTGCAGCTGCAGAGCAACAATTTGAGAAGGAACCATACGGTGATGGAAGTTCTGCGGTGCAGGTATATGCCAGAGAATCAAGTAAGCTTATGCTGGAAGTTCTGAAAAGAGGACCCAAAGCAAAGGAAGATGATGAGAAATCTATTCCTGCCTTTAAAAGTGTGTTTGATATCTCTGGTGGCCGCAGATCTTTTATTGATGCAGAGGAGGCTGAGGAGCTTTTCAAACCACTAAGGGAGCTTGGAAACTCCTATACTAAGATATGTCTGAGCAATAGAAGCTTTGGTTTGGATGCAGCCCGTGTTGCTGTGCCAATCTTATCATCCATCAAACATCAATTGAAAGAAGTGGATCTGTCAGATTTTATTGCAGGAAGATCAGAGACAGAAGCTATTGAAGTCATGAATCTGTTTTCTTCAGCCCTGGAAGGATGTGAATTGAGGTATCTGAACCTTTCAGACAATGCCATGGGCGAGAAAGGTGTAAATGCATTTGAGTCACTCCTGAGATCACAAAATAATTTGGAGGAACTTTATTTGATGAATGATGGTATTTCAGAAGAAGCTGCAAGAGCAGTTTCTAAGTTCATTCCGTCCACTGGGAAGCTTAGAGTCCTTCATTTTCACAATAATATGACAGGAGATGAAGGGGCAATTGCCATCTCTGATATGGTGAAGCGTTCACCTGTCTTGGAGGATTTCCGTTGTTCATCTACAAGGGTGGGCTCTGAAGGCGGTGTAGCTTTAGCTGAAGCACTTGGGACTTGCACACATTTGAAGAAGCTCGATTTGCGTGACAACATGTTCGGTGTAGAATCTGGGGTTGCTTTGAGTAAAGTCCTATCTGCTTTTACAGAACTTACTGAAATTTACCTCAGTTATCTTAACTTGGAAGATGAAGGAACAGAAGCCCTTGCCAATGCTCTCAAGGATTCTGCACCTTTGCTTGAAGTTCTGGAATTGGCGGGAAATGATATTACAGCCAAATCAACTGCTGCTTTGGCTTCCTGTATAGCAGCAAAACAATTCCTTACTAGGTTAATATTGTCAGAGAATGAACTGAAGGATGAAGGTTCAATTATGATCAGCAAAGCATTGGCAGAGGGTCATGGTCAGTTAATTGAGGTTGATTTGAGCTCTAATTCAATTAGAAGGGTTGGGGCGAGACTTTTGGCTCAGGCTGTTGTGAATAAACCTGGGTTTAAGTCACTGAACATAAATGGTAACTTCATATCTGATGAAGGGATTGATGAGGTAGTGGACATGTTTAAAAATTCCCCACATCTGCTTGGGCCTTTGGATGAGAATGACCCCGAAGGAGAAGATCTTGATGAAGAGGATGAAGCTGAAGGTGCTGACAACGAGGATGAATTGGAATTGAGGCTCAAGGTCCTTGAACTAAAGCGAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

575

Amino Acids

63.14

Weight (kDa)

4.79

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	52 - 147	4.7e-34	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
AciI	CCGC	5 cut(s)	145, 365, 493, 1044, 1274
AclWI	GGATC	1 cut(s)	669
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	3 cut(s)	217, 1176, 1582
AcuI	CTGAAG	6 cut(s)	81, 711, 1059, 1080, 1391, 1677
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	908
AflIII	ACRYGT	2 cut(s)	1110, 1572
AgsI	TTSAA	8 cut(s)	535, 652, 707, 1087, 1259, 1386, 1455, 1706
AjnI	CCWGG	3 cut(s)	287, 732, 1504
Alw21I	GWGCWC	1 cut(s)	1448
Alw26I	GTCTC	2 cut(s)	686, 1468
AlwI	GGATC	1 cut(s)	669
AoxI	GGCC	6 cut(s)	50, 167, 253, 273, 490, 1601
ApeKI	GCWGC	6 cut(s)	314, 317, 605, 875, 1304, 1325
ApoI	RAATTY	3 cut(s)	217, 1176, 1582
ArsI	GACNNNNNNTTYG	2 cut(s)	1097, 1129
AspS9I	GGNCC	4 cut(s)	51, 422, 1601, 1699
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	362, 984, 994
AvaII	GGWCC	2 cut(s)	422, 1699
BanII	GRGCYC	2 cut(s)	1037, 1448
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
Bbv12I	GWGCWC	1 cut(s)	1448
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	6 cut(s)	304, 326, 617, 862, 1291, 1337
BccI	CCATC	5 cut(s)	238, 347, 644, 851, 977
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	3 cut(s)	289, 734, 1506
BclI	TGATCA	1 cut(s)	1392
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	686, 1468
BfaI	CTAG	2 cut(s)	243, 1344
BfmI	CTRYAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	361
BglII	AGATCT	2 cut(s)	497, 1633
BisI	GCNGC	7 cut(s)	315, 318, 493, 606, 876, 1305, 1326
BlsI	GCNGC	7 cut(s)	316, 319, 494, 607, 877, 1306, 1327
Bme1390I	CCNGG	4 cut(s)	149, 289, 734, 1506
Bme18I	GGWCC	2 cut(s)	422, 1699
BmgT120I	GGNCC	4 cut(s)	51, 422, 1601, 1699
BmiI	GGNNCC	2 cut(s)	342, 424
BmrFI	CCNGG	4 cut(s)	149, 289, 734, 1506
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	3 cut(s)	274, 499, 592
BmuI	ACTGGG	1 cut(s)	918
Bpu10I	CCTNAGC	2 cut(s)	522, 1485
BpuEI	CTTGAG	3 cut(s)	4, 1220, 1679
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	276, 732, 777, 1505
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse1I	ACTGG	1 cut(s)	913
BseBI	CCWGG	3 cut(s)	289, 734, 1506
BseDI	CCNNGG	4 cut(s)	276, 732, 777, 1505
BseGI	GGATG	8 cut(s)	230, 607, 632, 746, 1381, 1615, 1654, 1681
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMII	CTCAG	6 cut(s)	191, 513, 569, 806, 1198, 1499
BseNI	ACTGG	1 cut(s)	913
BseRI	GAGGAG	2 cut(s)	530, 539
BseXI	GCAGC	6 cut(s)	304, 326, 617, 862, 1291, 1337
BsgI	GTGCAG	2 cut(s)	389, 1230
BshFI	GGCC	6 cut(s)	52, 169, 255, 275, 492, 1603
BsiHKAI	GWGCWC	1 cut(s)	1448
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	1084
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	2 cut(s)	686, 1468
BsmFI	GGGAC	1 cut(s)	1084
BsnI	GGCC	6 cut(s)	52, 169, 255, 275, 492, 1603
Bsp1286I	GDGCHC	2 cut(s)	1037, 1448
Bsp143I	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	5 cut(s)	145, 365, 493, 1044, 1274
BspANI	GGCC	6 cut(s)	52, 169, 255, 275, 492, 1603
BspCNI	CTCAG	6 cut(s)	190, 514, 570, 807, 1197, 1498
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	342, 424
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	913
BssECI	CCNNGG	4 cut(s)	276, 732, 777, 1505
BssMI	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	3 cut(s)	289, 734, 1506
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	3 cut(s)	88, 264, 1638
BstC8I	GCNNGC	2 cut(s)	171, 257
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	8 cut(s)	230, 607, 632, 746, 1381, 1615, 1654, 1681
BstKTI	GATC	7 cut(s)	106, 500, 664, 689, 821, 1395, 1636
BstMAI	GTCTC	2 cut(s)	686, 1468
BstMBI	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
BstMWI	GCNNNNNNNGC	9 cut(s)	314, 518, 588, 614, 881, 1041, 1099, 1310, 1661
BstNI	CCWGG	3 cut(s)	289, 734, 1506
BstNSI	RCATGY	2 cut(s)	1114, 1576
BstSCI	CCNGG	4 cut(s)	147, 287, 732, 1504
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	6 cut(s)	304, 326, 617, 862, 1291, 1337
BstX2I	RGATCY	3 cut(s)	497, 661, 1633
BstYI	RGATCY	3 cut(s)	497, 661, 1633
BsuRI	GGCC	6 cut(s)	52, 169, 255, 275, 492, 1603
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	8 cut(s)	230, 607, 632, 746, 1381, 1615, 1654, 1681
BtsIMutI	CAGTG	2 cut(s)	906, 1517
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	171, 257
CciI	TCATGA	1 cut(s)	711
Cfr13I	GGNCC	4 cut(s)	51, 422, 1601, 1699
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	6 cut(s)	115, 712, 778, 1111, 1418, 1573
CviQI	GTAC	1 cut(s)	183
DpnI	GATC	7 cut(s)	105, 499, 663, 688, 820, 1394, 1635
DpnII	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
DraI	TTTAAA	2 cut(s)	466, 1579
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	3 cut(s)	88, 264, 1638
EarI	CTCTTC	3 cut(s)	88, 264, 1638
Ecl136II	GAGCTC	1 cut(s)	1446
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	2 cut(s)	1037, 1448
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	422, 1699
Eco53kI	GAGCTC	1 cut(s)	1446
Eco57I	CTGAAG	6 cut(s)	81, 711, 1059, 1080, 1391, 1677
EcoICRI	GAGCTC	1 cut(s)	1446
EcoO109I	RGGNCCY	2 cut(s)	422, 1699
EcoRII	CCWGG	3 cut(s)	287, 732, 1504
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	777
EcoT22I	ATGCAT	1 cut(s)	802
EcoT38I	GRGCYC	2 cut(s)	1037, 1448
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	6 cut(s)	118, 715, 781, 1114, 1421, 1576
FaqI	GGGAC	1 cut(s)	1084
FatI	CATG	6 cut(s)	114, 711, 777, 1110, 1417, 1572
FauI	CCCGC	1 cut(s)	1267
FbaI	TGATCA	1 cut(s)	1392
Fnu4HI	GCNGC	7 cut(s)	315, 318, 493, 606, 876, 1305, 1326
FokI	GGATG	8 cut(s)	217, 614, 619, 753, 1388, 1622, 1661, 1688
FriOI	GRGCYC	2 cut(s)	1037, 1448
Fsp4HI	GCNGC	7 cut(s)	315, 318, 493, 606, 876, 1305, 1326
FspBI	CTAG	2 cut(s)	243, 1344
GluI	GCNGC	7 cut(s)	315, 318, 493, 606, 876, 1305, 1326
HaeIII	GGCC	6 cut(s)	52, 169, 255, 275, 492, 1603
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	6 cut(s)	118, 715, 781, 1114, 1421, 1576
HindIII	AAGCTT	3 cut(s)	395, 589, 914
HinfI	GANTC	7 cut(s)	119, 386, 715, 806, 921, 1124, 1241
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	3 cut(s)	362, 984, 994
Hpy166II	GTNNAC	4 cut(s)	69, 906, 992, 1570
Hpy188III	TCNNGA	7 cut(s)	21, 99, 243, 712, 814, 1265, 1637
Hpy8I	GTNNAC	4 cut(s)	69, 906, 992, 1570
HpyCH4III	ACNGT	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	9 cut(s)	314, 518, 588, 614, 881, 1041, 1099, 1310, 1661
Hsp92II	CATG	6 cut(s)	118, 715, 781, 1114, 1421, 1576
Ksp22I	TGATCA	1 cut(s)	1392
Kzo9I	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
LmnI	GCTCC	2 cut(s)	526, 547
Lsp1109I	GCAGC	6 cut(s)	304, 326, 617, 862, 1291, 1337
LweI	GCATC	3 cut(s)	274, 499, 592
MaeI	CTAG	2 cut(s)	243, 1344
MaeIII	GTNAC	4 cut(s)	807, 1103, 1515, 1532
MalI	GATC	7 cut(s)	105, 499, 663, 688, 820, 1394, 1635
MboI	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
MfeI	CAATTG	2 cut(s)	647, 963
MflI	RGATCY	3 cut(s)	497, 661, 1633
MhlI	GDGCHC	2 cut(s)	1037, 1448
MlyI	GAGTC	2 cut(s)	815, 930
Mph1103I	ATGCAT	1 cut(s)	802
MseI	TTAA	6 cut(s)	465, 1194, 1349, 1427, 1512, 1578
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	4 cut(s)	149, 289, 734, 1506
MunI	CAATTG	2 cut(s)	647, 963
MvaI	CCWGG	3 cut(s)	289, 734, 1506
MwoI	GCNNNNNNNGC	9 cut(s)	314, 518, 588, 614, 881, 1041, 1099, 1310, 1661
NciI	CCSGG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
NlaIII	CATG	6 cut(s)	118, 715, 781, 1114, 1421, 1576
NlaIV	GGNNCC	2 cut(s)	342, 424
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	3 cut(s)	807, 1103, 1515
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	2 cut(s)	1114, 1576
PagI	TCATGA	1 cut(s)	711
PciI	ACATGT	2 cut(s)	1110, 1572
PfeI	GAWTC	5 cut(s)	119, 386, 715, 1124, 1241
PkrI	GCNGC	7 cut(s)	316, 319, 494, 607, 877, 1306, 1327
PleI	GAGTC	2 cut(s)	814, 929
PpsI	GAGTC	2 cut(s)	814, 929
PpuMI	RGGWCCY	2 cut(s)	422, 1699
PscI	ACATGT	2 cut(s)	1110, 1572
Psp124BI	GAGCTC	1 cut(s)	1448
Psp5II	RGGWCCY	2 cut(s)	422, 1699
Psp6I	CCWGG	3 cut(s)	287, 732, 1504
PspGI	CCWGG	3 cut(s)	287, 732, 1504
PspN4I	GGNNCC	2 cut(s)	342, 424
PspPI	GGNCC	4 cut(s)	51, 422, 1601, 1699
PspPPI	RGGWCCY	2 cut(s)	422, 1699
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	497, 661, 1633
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	1448
SaqAI	TTAA	6 cut(s)	465, 1194, 1349, 1427, 1512, 1578
SatI	GCNGC	7 cut(s)	315, 318, 493, 606, 876, 1305, 1326
Sau3AI	GATC	7 cut(s)	103, 497, 661, 686, 818, 1392, 1633
Sau96I	GGNCC	4 cut(s)	51, 422, 1601, 1699
SchI	GAGTC	2 cut(s)	815, 930
ScrFI	CCNGG	4 cut(s)	149, 289, 734, 1506
SduI	GDGCHC	2 cut(s)	1037, 1448
SfaNI	GCATC	3 cut(s)	274, 499, 592
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	422, 1699
SmlI	CTYRAG	3 cut(s)	19, 1235, 1694
SmoI	CTYRAG	3 cut(s)	19, 1235, 1694
SsiI	CCGC	5 cut(s)	145, 365, 493, 1044, 1274
SspI	AATATT	2 cut(s)	192, 1353
SspMI	CTAG	2 cut(s)	243, 1344
SstI	GAGCTC	1 cut(s)	1448
StyD4I	CCNGG	4 cut(s)	147, 287, 732, 1504
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	60, 1095
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	5 cut(s)	119, 386, 715, 1124, 1241
Tru1I	TTAA	6 cut(s)	465, 1194, 1349, 1427, 1512, 1578
Tru9I	TTAA	6 cut(s)	465, 1194, 1349, 1427, 1512, 1578
TscAI	CASTG	2 cut(s)	913, 1524
TseFI	GTSAC	3 cut(s)	807, 1103, 1515
TseI	GCWGC	6 cut(s)	314, 317, 605, 875, 1304, 1325
Tsp45I	GTSAC	3 cut(s)	807, 1103, 1515
TspGWI	ACGGA	2 cut(s)	891, 1001
TspRI	CASTG	2 cut(s)	913, 1524
VpaK11BI	GGWCC	2 cut(s)	422, 1699
XapI	RAATTY	3 cut(s)	217, 1176, 1582
XbaI	TCTAGA	1 cut(s)	242
XceI	RCATGY	2 cut(s)	1114, 1576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XspI	CTAG	2 cut(s)	243, 1344
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.