Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Forward (+)

52951680 .. 52953428

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG327100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGATTCTACAACAGAAACTTTCCAGCACCGCCCGATGTCAATCAAATTATGGCCTGCTACTCAGAGTACCAGAATATTGCTTGTAGAACGAATGACCAAGAATTTCATAACTCCATCCATTTTCTCTAGAAAGTATGGCCTGCTTAGTAAAGAAGAGGCCGAGGAAGATGCCAGGAAAATAGAAGACTTTGCCTTTGCAGCTGCAGAGCAACAATTTGAGAAGGAACCATATGGTGATGGAAGTTCTGCAGTGCAGGTATATGCCAGAGAATCAAGTAAGCTTATGCTGGAAGTTCTGAAAAGAGGGCCCAAAGCAAAGGAAGATGATGAGAAATCTATTCCTGCCTTTAAAAGTGTGTTTGATATCTCTGGTGGCCGCAGATCTTTTATTGATGCAGAGGAGGCTGAGGAGCTTTTCAAACCACTAAGGGAGCTTGGAAACTCCTATACTAAGATATGCTTGAGCAATAGAAGCTTTGGTTTGGATGCAGCCCGTGTTGCTGTGCCAATCTTATCATCCATCAAACATCAATTGAAAGAAGTGGATCTGTCAGATTTTATTGCAGGAAGGTCAGAGACAGAAGCTATTGAAGTCATGAACCTGTTTTCTTCAGCCCTGGAAGGATGTGAATTGAGGTATCTGAACCTTTCAGACAATGCCATGGGCGAGAAAGGTGTAAATGCATTTGGGTCACTCCTGAGATCACAAAATAATTTGGAGGAACTTTATTTGATGAATGATGGTATTTCAGAAGAAGCTGCAAGAGCAGTTTCTAAGTTCATTCCGTCCACTGGGAAGCTTAGAGTCCTTCATTTTCACAATAATATGACAGGAGATGAAGGGGCAATTGCCATCTCTGATATGGTGAAGCGTTCACCTGTCTTGGAGGATTTCCGTTGTTCATCTACAAGGGTGGGCTCTGAAGGCGGTGTAGCTTTAGCTGAAGCACTTGGGACTTGCACACATTTGAAGAAGCTTGATTTGCGTGACAACATGTTCGGTGTAGAATCTGGGGTTGCTTTGAGTAAAGTCCTATCTGCTTTTACAGAACTTACTGAAATTTACCTCAGTTATCTTAACTTGGAAGATGAAGGAACAGAAGCCCTTGCCAATGCTCTCAAGGATTCTGCACCTTTGCTTGAAGTTCTGGAATTGGCAGGAAATGATATTACAGCCAAATCAACTGCTGCTTTGGCTTCCTGTATAGCAGCAAAACAATTCCTTACTAGGTTAATATTGTCAGAGAATGAACTGAAGGATGAAGGTTCAATTATGATCAGCAAAGCATTGGCAGAGGGTCATGGTCAGTTAATTGAGGTTGATTTGAGCTCTAATTCAATTAGAAGGGTTGGGGCGAGACTTTTGGCTCAGGCTGTTGTGAATAAACCTGGGTTTAAGTCACTGAACATAAATGGTAACTTCATATCTGATGAAGGGATTGATGAGGTGGTGGACATGTTTAAAAATTCCCCACATCTGCTTGGGCCTTTGGATGAGAATGACCCCGAAGGAGAAGATCTGGATGAAGAGGATGAAGACGAAGGTGCTGACAACGAGGATGAATTGGAATTGAGGCTCAAGGTCCTTGAACTAAGGCGAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

536

Amino Acids

59.03

Weight (kDa)

4.69

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	14 - 109	1.2e-34	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AciI	CCGC	3 cut(s)	31, 379, 930
AclWI	GGATC	1 cut(s)	555
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	3 cut(s)	103, 1062, 1468
AcuI	CTGAAG	4 cut(s)	597, 945, 966, 1277
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	794
AflIII	ACRYGT	2 cut(s)	996, 1458
AgsI	TTSAA	8 cut(s)	421, 538, 593, 973, 1145, 1272, 1341, 1592
AjnI	CCWGG	3 cut(s)	173, 618, 1390
Alw21I	GWGCWC	1 cut(s)	1334
Alw26I	GTCTC	2 cut(s)	572, 1354
AlwI	GGATC	1 cut(s)	555
AoxI	GGCC	6 cut(s)	53, 139, 159, 308, 376, 1487
ApaI	GGGCCC	1 cut(s)	312
ApeKI	GCWGC	6 cut(s)	200, 203, 491, 761, 1190, 1211
ApoI	RAATTY	3 cut(s)	103, 1062, 1468
ArsI	GACNNNNNNTTYG	4 cut(s)	179, 211, 983, 1015
AspS9I	GGNCC	4 cut(s)	308, 309, 1487, 1585
AsuHPI	GGTGA	3 cut(s)	248, 870, 880
AvaII	GGWCC	1 cut(s)	1585
BaeGI	GKGCMC	1 cut(s)	312
BanII	GRGCYC	3 cut(s)	312, 923, 1334
BbsI	GAAGAC	2 cut(s)	192, 1545
Bbv12I	GWGCWC	1 cut(s)	1334
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
BccI	CCATC	5 cut(s)	124, 233, 530, 737, 863
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	3 cut(s)	175, 620, 1392
BclI	TGATCA	1 cut(s)	1278
BcoDI	GTCTC	2 cut(s)	572, 1354
BfaI	CTAG	2 cut(s)	129, 1230
BfmI	CTRYAG	2 cut(s)	204, 249
BfuAI	ACCTGC	1 cut(s)	247
BglII	AGATCT	2 cut(s)	383, 1519
BisI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
BlsI	GCNGC	7 cut(s)	202, 205, 380, 493, 763, 1192, 1213
Bme1390I	CCNGG	3 cut(s)	175, 620, 1392
Bme18I	GGWCC	1 cut(s)	1585
BmgT120I	GGNCC	4 cut(s)	308, 309, 1487, 1585
BmiI	GGNNCC	2 cut(s)	228, 310
BmrFI	CCNGG	3 cut(s)	175, 620, 1392
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	3 cut(s)	160, 385, 478
BmuI	ACTGGG	1 cut(s)	804
BpiI	GAAGAC	2 cut(s)	192, 1545
Bpu10I	CCTNAGC	2 cut(s)	408, 1371
BpuEI	CTTGAG	3 cut(s)	484, 1106, 1565
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	162, 618, 663, 1391
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	799
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	3 cut(s)	175, 620, 1392
BseDI	CCNNGG	4 cut(s)	162, 618, 663, 1391
BseGI	GGATG	9 cut(s)	116, 493, 518, 632, 1267, 1501, 1531, 1540, 1567
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMII	CTCAG	5 cut(s)	77, 399, 692, 1084, 1385
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	2 cut(s)	416, 425
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
BsgI	GTGCAG	2 cut(s)	275, 1116
BshFI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
BsiHKAI	GWGCWC	1 cut(s)	1334
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	2 cut(s)	572, 1354
BsmFI	GGGAC	1 cut(s)	970
BsnI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
Bsp120I	GGGCCC	1 cut(s)	308
Bsp1286I	GDGCHC	3 cut(s)	312, 923, 1334
Bsp143I	GATC	5 cut(s)	383, 547, 704, 1278, 1519
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	3 cut(s)	31, 379, 930
BspANI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
BspCNI	CTCAG	5 cut(s)	76, 400, 693, 1083, 1384
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	228, 310
BspMAI	CTGCAG	2 cut(s)	208, 253
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	799
BssECI	CCNNGG	4 cut(s)	162, 618, 663, 1391
BssMI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	3 cut(s)	175, 620, 1392
Bst6I	CTCTTC	2 cut(s)	150, 1524
BstC8I	GCNNGC	2 cut(s)	57, 143
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	9 cut(s)	116, 493, 518, 632, 1267, 1501, 1531, 1540, 1567
BstKTI	GATC	5 cut(s)	386, 550, 707, 1281, 1522
BstMAI	GTCTC	2 cut(s)	572, 1354
BstMBI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 404, 474, 500, 767, 927, 985, 1196
BstNI	CCWGG	3 cut(s)	175, 620, 1392
BstNSI	RCATGY	2 cut(s)	1000, 1462
BstSCI	CCNGG	3 cut(s)	173, 618, 1390
BstSFI	CTRYAG	2 cut(s)	204, 249
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
BstV2I	GAAGAC	2 cut(s)	192, 1545
BstX2I	RGATCY	3 cut(s)	383, 547, 1519
BstYI	RGATCY	3 cut(s)	383, 547, 1519
BsuRI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	9 cut(s)	116, 493, 518, 632, 1267, 1501, 1531, 1540, 1567
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	258, 792, 1403
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	57, 143
CciI	TCATGA	1 cut(s)	597
Cfr13I	GGNCC	4 cut(s)	308, 309, 1487, 1585
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	5 cut(s)	598, 664, 997, 1304, 1459
CviQI	GTAC	1 cut(s)	69
DpnI	GATC	5 cut(s)	385, 549, 706, 1280, 1521
DpnII	GATC	5 cut(s)	383, 547, 704, 1278, 1519
DraI	TTTAAA	2 cut(s)	352, 1465
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	150, 1524
EarI	CTCTTC	2 cut(s)	150, 1524
Ecl136II	GAGCTC	1 cut(s)	1332
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	3 cut(s)	312, 923, 1334
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	1585
Eco53kI	GAGCTC	1 cut(s)	1332
Eco57I	CTGAAG	4 cut(s)	597, 945, 966, 1277
EcoICRI	GAGCTC	1 cut(s)	1332
EcoO109I	RGGNCCY	2 cut(s)	308, 1585
EcoRII	CCWGG	3 cut(s)	173, 618, 1390
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	3 cut(s)	312, 923, 1334
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	5 cut(s)	601, 667, 1000, 1307, 1462
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	5 cut(s)	597, 663, 996, 1303, 1458
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	1278
Fnu4HI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
FokI	GGATG	9 cut(s)	103, 500, 505, 639, 1274, 1508, 1538, 1547, 1574
FriOI	GRGCYC	3 cut(s)	312, 923, 1334
Fsp4HI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
FspBI	CTAG	2 cut(s)	129, 1230
GluI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
HaeIII	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
Hin1II	CATG	5 cut(s)	601, 667, 1000, 1307, 1462
HindIII	AAGCTT	4 cut(s)	281, 475, 800, 977
HinfI	GANTC	5 cut(s)	5, 272, 807, 1010, 1127
HphI	GGTGA	3 cut(s)	248, 870, 880
Hpy166II	GTNNAC	3 cut(s)	792, 878, 1456
Hpy188III	TCNNGA	5 cut(s)	129, 598, 700, 1151, 1523
Hpy8I	GTNNAC	3 cut(s)	792, 878, 1456
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 404, 474, 500, 767, 927, 985, 1196
Hsp92II	CATG	5 cut(s)	601, 667, 1000, 1307, 1462
Ksp22I	TGATCA	1 cut(s)	1278
Kzo9I	GATC	5 cut(s)	383, 547, 704, 1278, 1519
LmnI	GCTCC	2 cut(s)	412, 433
Lsp1109I	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
LweI	GCATC	3 cut(s)	160, 385, 478
MaeI	CTAG	2 cut(s)	129, 1230
MaeIII	GTNAC	4 cut(s)	693, 989, 1401, 1418
MalI	GATC	5 cut(s)	385, 549, 706, 1280, 1521
MboI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
MfeI	CAATTG	2 cut(s)	533, 849
MflI	RGATCY	3 cut(s)	383, 547, 1519
MhlI	GDGCHC	3 cut(s)	312, 923, 1334
MlyI	GAGTC	1 cut(s)	816
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	3 cut(s)	175, 620, 1392
MunI	CAATTG	2 cut(s)	533, 849
MvaI	CCWGG	3 cut(s)	175, 620, 1392
MwoI	GCNNNNNNNGC	8 cut(s)	200, 404, 474, 500, 767, 927, 985, 1196
NcoI	CCATGG	1 cut(s)	663
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	5 cut(s)	383, 547, 704, 1278, 1519
NlaIII	CATG	5 cut(s)	601, 667, 1000, 1307, 1462
NlaIV	GGNNCC	2 cut(s)	228, 310
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	693, 989, 1401
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	2 cut(s)	1000, 1462
PagI	TCATGA	1 cut(s)	597
PciI	ACATGT	2 cut(s)	996, 1458
PfeI	GAWTC	4 cut(s)	5, 272, 1010, 1127
PkrI	GCNGC	7 cut(s)	202, 205, 380, 493, 763, 1192, 1213
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PpuMI	RGGWCCY	1 cut(s)	1585
PscI	ACATGT	2 cut(s)	996, 1458
Psp124BI	GAGCTC	1 cut(s)	1334
Psp5II	RGGWCCY	1 cut(s)	1585
Psp6I	CCWGG	3 cut(s)	173, 618, 1390
PspGI	CCWGG	3 cut(s)	173, 618, 1390
PspN4I	GGNNCC	2 cut(s)	228, 310
PspOMI	GGGCCC	1 cut(s)	308
PspPI	GGNCC	4 cut(s)	308, 309, 1487, 1585
PspPPI	RGGWCCY	1 cut(s)	1585
PstI	CTGCAG	2 cut(s)	208, 253
PsuI	RGATCY	3 cut(s)	383, 547, 1519
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	1334
SaqAI	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
SatI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
Sau3AI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
Sau96I	GGNCC	4 cut(s)	308, 309, 1487, 1585
SchI	GAGTC	1 cut(s)	816
ScrFI	CCNGG	3 cut(s)	175, 620, 1392
SduI	GDGCHC	3 cut(s)	312, 923, 1334
SfaNI	GCATC	3 cut(s)	160, 385, 478
SfcI	CTRYAG	2 cut(s)	204, 249
SinI	GGWCC	1 cut(s)	1585
SmlI	CTYRAG	3 cut(s)	463, 1121, 1580
SmoI	CTYRAG	3 cut(s)	463, 1121, 1580
SsiI	CCGC	3 cut(s)	31, 379, 930
SspI	AATATT	2 cut(s)	78, 1239
SspMI	CTAG	2 cut(s)	129, 1230
SstI	GAGCTC	1 cut(s)	1334
StyD4I	CCNGG	3 cut(s)	173, 618, 1390
StyI	CCWWGG	1 cut(s)	663
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	4 cut(s)	5, 272, 1010, 1127
Tru1I	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
Tru9I	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
TscAI	CASTG	3 cut(s)	258, 799, 1410
TseFI	GTSAC	3 cut(s)	693, 989, 1401
TseI	GCWGC	6 cut(s)	200, 203, 491, 761, 1190, 1211
Tsp45I	GTSAC	3 cut(s)	693, 989, 1401
TspGWI	ACGGA	2 cut(s)	777, 887
TspRI	CASTG	3 cut(s)	258, 799, 1410
VpaK11BI	GGWCC	1 cut(s)	1585
XapI	RAATTY	3 cut(s)	103, 1062, 1468
XbaI	TCTAGA	1 cut(s)	128
XceI	RCATGY	2 cut(s)	1000, 1462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XspI	CTAG	2 cut(s)	129, 1230
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.