Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Forward (+)

53215336 .. 53216946

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGATTCTACAACACAAACTTTCCAGCACCGCCCGATGTCAATCAAATTATGGCCTGCTACTCAGAGTACCAGGATATTGCTTGTAGAACGAATGACCAAGAATTTCATAACTCCATCCATTTTCTCTAGAAAGTACGGCCTGCTTAGTAAAGAAGAGGCCGAGGAAGATGCCAGGAAAATAGAAGCCTTTGCCTTTGCAGCTGCAGAGCAACAATTTGAGAAGGAACCATATGGTGATGGAAGTTCTGCAGTGCAGGTATATGCCAGAGAATCAAGTAAGCTTATGCTGGAAGTTCTGAAAAGAGGGCCCAAAGCAAAGGAAGATGATGAGAAATCTATTCCTGCCTTTAAAAGTGTGTTTGATATCTCTGGTGGCCGCAGATCTTTTATTGATGCAGAGGAGGCTGAGGAGCTTTTCAAACCACTAAGGGAGCTTGGAAACTCCTATACTAAGATATGCTTGAGCAATAGAAGCTTTGGTTTGGATGCAGCCCGTGTTGCTGTGCCAATCTTATCATCCATCAAACATCAATTGAAAGAAGTGGATCTGTCAGATTTTATTGCAGGAAGGTCAGAGACAGAAGCTATTGAAGTCATGAATCTGTTTTCTTCAGCCCTGGAAGGATGTGAATTGAGGTATCTGAACCTTTCAGACAATGCCATGGGCGAGAAAGGTGTAAATGCATTTGGGTCACTCCTGAGATCACAAAATAATTTGGAGGAACTTTATTTGATGAATGATGGTATTTCAGAAGAAGCTGCAAGAGCAGTTTCTAAGTTCATTCCGTCCACTGGGAAGCTTAGAGTCCTTCATTTTCACAATAATATGACAGGAGATGAAGGGGCAATTGCCATCTCTGATATGGTGAAGCGTTCACCTGTCTTGGAGGATTTCCGTTGTTCATCTACAAGGGTGGGCTCTGAAGGCGGTGTAGCTTTAGCTGAAGCACTTGGGACTTGCACACATTTGAAGAAGCTCGATTTGCGTGACAACATGTTCGGTGTAGAATCTGGGGTTGCTTTGAGTAAAGTCCTATCTGCTTTTACAGAACTTACTGAAATTTACCTCAGTTATCTTAACTTGGAAGATGAAGGAACAGAAGCCCTTGCCAATGCTCTCAAGGATTCTGCACCTTTGCTTGAAGTTCTGGAATTGGCAGGAAATGATATTACAGCCAAATCAACTGCTGCTTTGGCTTCCTGTATAGCAGCAAAACAATTCCTTACTAGGTTAATATTGTCAGAGAATGAACTGAAGGATGAAGGTTCAATTATGATCAGCAAAGCATTGGCAGAGGGTCATGGTCAGTTAATTGAGGTTGATTTGAGCTCTAATTCAATTAGAAGGGTTGGGGCGAGACTTTTGGCTCAGGCTGTTGTGAATAAACCTGGGTTTAAGTCACTGAACATAAATGGTAACTTCATATCTGATGAGGGGATTGATGAGGTGGTGGACACGTTTAAAAATTCCCCACATCTGCTTGGGCCTTTGGATGAGAATGACCCTGAAGGAGAAGATCTGGATGAAGAGGATGAAGACGAAGGTGCTGACAACGAGGATGAATTGGAATTGAGGCTCAAGGTCCTTGAACTAAGGCGAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

536

Amino Acids

58.95

Weight (kDa)

4.73

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	14 - 109	4.2e-34	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AciI	CCGC	3 cut(s)	31, 379, 930
AclWI	GGATC	1 cut(s)	555
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	3 cut(s)	103, 1062, 1468
AcuI	CTGAAG	5 cut(s)	597, 945, 966, 1277, 1530
AfaI	GTAC	2 cut(s)	70, 137
AfiI	CCNNNNNNNGG	1 cut(s)	794
AflIII	ACRYGT	2 cut(s)	996, 1458
AgsI	TTSAA	8 cut(s)	421, 538, 593, 973, 1145, 1272, 1341, 1592
AjnI	CCWGG	4 cut(s)	71, 173, 618, 1390
Alw21I	GWGCWC	1 cut(s)	1334
Alw26I	GTCTC	2 cut(s)	572, 1354
AlwI	GGATC	1 cut(s)	555
AoxI	GGCC	6 cut(s)	53, 139, 159, 308, 376, 1487
ApaI	GGGCCC	1 cut(s)	312
ApeKI	GCWGC	6 cut(s)	200, 203, 491, 761, 1190, 1211
ApoI	RAATTY	3 cut(s)	103, 1062, 1468
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
AspS9I	GGNCC	4 cut(s)	308, 309, 1487, 1585
AsuHPI	GGTGA	3 cut(s)	248, 870, 880
AvaII	GGWCC	1 cut(s)	1585
BaeGI	GKGCMC	1 cut(s)	312
BanII	GRGCYC	3 cut(s)	312, 923, 1334
BbsI	GAAGAC	1 cut(s)	1545
Bbv12I	GWGCWC	1 cut(s)	1334
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
BccI	CCATC	5 cut(s)	124, 233, 530, 737, 863
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	4 cut(s)	73, 175, 620, 1392
BclI	TGATCA	1 cut(s)	1278
BcoDI	GTCTC	2 cut(s)	572, 1354
BfaI	CTAG	2 cut(s)	129, 1230
BfmI	CTRYAG	2 cut(s)	204, 249
BfuAI	ACCTGC	1 cut(s)	247
BglII	AGATCT	2 cut(s)	383, 1519
BisI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
BlsI	GCNGC	7 cut(s)	202, 205, 380, 493, 763, 1192, 1213
Bme1390I	CCNGG	4 cut(s)	73, 175, 620, 1392
Bme18I	GGWCC	1 cut(s)	1585
BmgT120I	GGNCC	4 cut(s)	308, 309, 1487, 1585
BmiI	GGNNCC	2 cut(s)	228, 310
BmrFI	CCNGG	4 cut(s)	73, 175, 620, 1392
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	3 cut(s)	160, 385, 478
BmuI	ACTGGG	1 cut(s)	804
BpiI	GAAGAC	1 cut(s)	1545
Bpu10I	CCTNAGC	2 cut(s)	408, 1371
BpuEI	CTTGAG	3 cut(s)	484, 1106, 1565
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	162, 618, 663, 1391
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	799
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	4 cut(s)	73, 175, 620, 1392
BseDI	CCNNGG	4 cut(s)	162, 618, 663, 1391
BseGI	GGATG	9 cut(s)	116, 493, 518, 632, 1267, 1501, 1531, 1540, 1567
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMII	CTCAG	5 cut(s)	77, 399, 692, 1084, 1385
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	2 cut(s)	416, 425
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
BsgI	GTGCAG	2 cut(s)	275, 1116
BshFI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
BsiHKAI	GWGCWC	1 cut(s)	1334
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	2 cut(s)	572, 1354
BsmFI	GGGAC	1 cut(s)	970
BsnI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
Bsp120I	GGGCCC	1 cut(s)	308
Bsp1286I	GDGCHC	3 cut(s)	312, 923, 1334
Bsp143I	GATC	5 cut(s)	383, 547, 704, 1278, 1519
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	3 cut(s)	31, 379, 930
BspANI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
BspCNI	CTCAG	5 cut(s)	76, 400, 693, 1083, 1384
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	228, 310
BspMAI	CTGCAG	2 cut(s)	208, 253
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	799
BssECI	CCNNGG	4 cut(s)	162, 618, 663, 1391
BssMI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	4 cut(s)	73, 175, 620, 1392
Bst6I	CTCTTC	2 cut(s)	150, 1524
BstC8I	GCNNGC	2 cut(s)	57, 143
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	9 cut(s)	116, 493, 518, 632, 1267, 1501, 1531, 1540, 1567
BstKTI	GATC	5 cut(s)	386, 550, 707, 1281, 1522
BstMAI	GTCTC	2 cut(s)	572, 1354
BstMBI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 404, 474, 500, 767, 927, 985, 1196
BstNI	CCWGG	4 cut(s)	73, 175, 620, 1392
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	4 cut(s)	71, 173, 618, 1390
BstSFI	CTRYAG	2 cut(s)	204, 249
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
BstV2I	GAAGAC	1 cut(s)	1545
BstX2I	RGATCY	3 cut(s)	383, 547, 1519
BstYI	RGATCY	3 cut(s)	383, 547, 1519
BsuRI	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	9 cut(s)	116, 493, 518, 632, 1267, 1501, 1531, 1540, 1567
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	258, 792, 1403
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	57, 143
CciI	TCATGA	1 cut(s)	597
Cfr13I	GGNCC	4 cut(s)	308, 309, 1487, 1585
Csp6I	GTAC	2 cut(s)	69, 136
CviAII	CATG	4 cut(s)	598, 664, 997, 1304
CviQI	GTAC	2 cut(s)	69, 136
DpnI	GATC	5 cut(s)	385, 549, 706, 1280, 1521
DpnII	GATC	5 cut(s)	383, 547, 704, 1278, 1519
DraI	TTTAAA	2 cut(s)	352, 1465
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	150, 1524
EarI	CTCTTC	2 cut(s)	150, 1524
Ecl136II	GAGCTC	1 cut(s)	1332
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	3 cut(s)	312, 923, 1334
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	1585
Eco53kI	GAGCTC	1 cut(s)	1332
Eco57I	CTGAAG	5 cut(s)	597, 945, 966, 1277, 1530
EcoICRI	GAGCTC	1 cut(s)	1332
EcoO109I	RGGNCCY	2 cut(s)	308, 1585
EcoRII	CCWGG	4 cut(s)	71, 173, 618, 1390
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	3 cut(s)	312, 923, 1334
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	4 cut(s)	601, 667, 1000, 1307
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	4 cut(s)	597, 663, 996, 1303
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	1278
Fnu4HI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
FokI	GGATG	9 cut(s)	103, 500, 505, 639, 1274, 1508, 1538, 1547, 1574
FriOI	GRGCYC	3 cut(s)	312, 923, 1334
Fsp4HI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
FspBI	CTAG	2 cut(s)	129, 1230
GluI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
HaeIII	GGCC	6 cut(s)	55, 141, 161, 310, 378, 1489
Hin1II	CATG	4 cut(s)	601, 667, 1000, 1307
HindIII	AAGCTT	3 cut(s)	281, 475, 800
HinfI	GANTC	6 cut(s)	5, 272, 601, 807, 1010, 1127
HphI	GGTGA	3 cut(s)	248, 870, 880
Hpy166II	GTNNAC	3 cut(s)	792, 878, 1456
Hpy188III	TCNNGA	5 cut(s)	129, 598, 700, 1151, 1523
Hpy8I	GTNNAC	3 cut(s)	792, 878, 1456
HpyCH4IV	ACGT	1 cut(s)	1460
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 404, 474, 500, 767, 927, 985, 1196
HpySE526I	ACGT	1 cut(s)	1460
Hsp92II	CATG	4 cut(s)	601, 667, 1000, 1307
Ksp22I	TGATCA	1 cut(s)	1278
Kzo9I	GATC	5 cut(s)	383, 547, 704, 1278, 1519
LmnI	GCTCC	2 cut(s)	412, 433
Lsp1109I	GCAGC	6 cut(s)	190, 212, 503, 748, 1177, 1223
LweI	GCATC	3 cut(s)	160, 385, 478
MaeI	CTAG	2 cut(s)	129, 1230
MaeII	ACGT	1 cut(s)	1460
MaeIII	GTNAC	4 cut(s)	693, 989, 1401, 1418
MalI	GATC	5 cut(s)	385, 549, 706, 1280, 1521
MboI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
MfeI	CAATTG	2 cut(s)	533, 849
MflI	RGATCY	3 cut(s)	383, 547, 1519
MhlI	GDGCHC	3 cut(s)	312, 923, 1334
MlyI	GAGTC	1 cut(s)	816
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	4 cut(s)	73, 175, 620, 1392
MunI	CAATTG	2 cut(s)	533, 849
MvaI	CCWGG	4 cut(s)	73, 175, 620, 1392
MwoI	GCNNNNNNNGC	8 cut(s)	200, 404, 474, 500, 767, 927, 985, 1196
NcoI	CCATGG	1 cut(s)	663
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	5 cut(s)	383, 547, 704, 1278, 1519
NlaIII	CATG	4 cut(s)	601, 667, 1000, 1307
NlaIV	GGNNCC	2 cut(s)	228, 310
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	693, 989, 1401
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	1 cut(s)	1000
PagI	TCATGA	1 cut(s)	597
PciI	ACATGT	1 cut(s)	996
PfeI	GAWTC	5 cut(s)	5, 272, 601, 1010, 1127
PkrI	GCNGC	7 cut(s)	202, 205, 380, 493, 763, 1192, 1213
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PpuMI	RGGWCCY	1 cut(s)	1585
PscI	ACATGT	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	1334
Psp5II	RGGWCCY	1 cut(s)	1585
Psp6I	CCWGG	4 cut(s)	71, 173, 618, 1390
PspGI	CCWGG	4 cut(s)	71, 173, 618, 1390
PspN4I	GGNNCC	2 cut(s)	228, 310
PspOMI	GGGCCC	1 cut(s)	308
PspPI	GGNCC	4 cut(s)	308, 309, 1487, 1585
PspPPI	RGGWCCY	1 cut(s)	1585
PstI	CTGCAG	2 cut(s)	208, 253
PsuI	RGATCY	3 cut(s)	383, 547, 1519
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	70, 137
RsaNI	GTAC	2 cut(s)	69, 136
SacI	GAGCTC	1 cut(s)	1334
SaqAI	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
SatI	GCNGC	7 cut(s)	201, 204, 379, 492, 762, 1191, 1212
Sau3AI	GATC	5 cut(s)	383, 547, 704, 1278, 1519
Sau96I	GGNCC	4 cut(s)	308, 309, 1487, 1585
SchI	GAGTC	1 cut(s)	816
ScrFI	CCNGG	4 cut(s)	73, 175, 620, 1392
SduI	GDGCHC	3 cut(s)	312, 923, 1334
SfaNI	GCATC	3 cut(s)	160, 385, 478
SfcI	CTRYAG	2 cut(s)	204, 249
SinI	GGWCC	1 cut(s)	1585
SmlI	CTYRAG	3 cut(s)	463, 1121, 1580
SmoI	CTYRAG	3 cut(s)	463, 1121, 1580
SsiI	CCGC	3 cut(s)	31, 379, 930
SspI	AATATT	1 cut(s)	1239
SspMI	CTAG	2 cut(s)	129, 1230
SstI	GAGCTC	1 cut(s)	1334
StyD4I	CCNGG	4 cut(s)	71, 173, 618, 1390
StyI	CCWWGG	1 cut(s)	663
TaiI	ACGT	1 cut(s)	1463
TaqI	TCGA	1 cut(s)	981
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	5 cut(s)	5, 272, 601, 1010, 1127
Tru1I	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
Tru9I	TTAA	6 cut(s)	351, 1080, 1235, 1313, 1398, 1464
TscAI	CASTG	3 cut(s)	258, 799, 1410
TseFI	GTSAC	3 cut(s)	693, 989, 1401
TseI	GCWGC	6 cut(s)	200, 203, 491, 761, 1190, 1211
Tsp45I	GTSAC	3 cut(s)	693, 989, 1401
TspGWI	ACGGA	2 cut(s)	777, 887
TspRI	CASTG	3 cut(s)	258, 799, 1410
VpaK11BI	GGWCC	1 cut(s)	1585
XapI	RAATTY	3 cut(s)	103, 1062, 1468
XbaI	TCTAGA	1 cut(s)	128
XceI	RCATGY	1 cut(s)	1000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XspI	CTAG	2 cut(s)	129, 1230
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.