Rw0G011050

RAN GTPase-activating protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00479
Physical Location & Seq
Reverse (-)
16105 .. 17637
1533 bp
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UTR
Exon/CDS
Intron
Rw0G011050.1

Sequence Viewer

Length: 312 bp
ATGGGATTGGCTAGAAATGATATTACAGTCAAATCAACTGCTGCTATAGCTTCTTGTATAGCAGGAAAGCAACTCCTCACCAAGTTAATCTTGTCAGAGAATGAACTAAAGGATGAACGTGCAATTCTGGCCAGCAAAGCATTATCAAAGGGTCATGGTCAGTTAATTGAGGTTAATTTGAGCTCTAATTCAATTGGAAGGCCCAGTGCAAGACATTTAGCAGAGGTTGTTGTGAACAAACCTAGATTGTGCTCTAATGAGGATATGAACCCATTATCGATGGAGATTCTTGAGGAAGAACTTGTGAAGTAG

Protein Analysis

103

Amino Acids

11.14

Weight (kDa)

6.73

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 129
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 2 cut(s) 50, 183
AluI AGCT 2 cut(s) 50, 183
Alw21I GWGCWC 2 cut(s) 185, 254
AoxI GGCC 2 cut(s) 129, 200
ApeKI GCWGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 70
BalI TGGCCA 1 cut(s) 131
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 185, 254
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 274
BfaI CTAG 2 cut(s) 12, 243
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 201
BmrI ACTGGG 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 311
Bsa29I ATCGAT 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 278
BseGI GGATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 131, 202
BshVI ATCGAT 1 cut(s) 278
BsiHKAI GWGCWC 2 cut(s) 185, 254
BsnI GGCC 2 cut(s) 131, 202
Bsp1286I GDGCHC 2 cut(s) 185, 254
BspANI GGCC 2 cut(s) 131, 202
BspDI ATCGAT 1 cut(s) 278
BsrI ACTGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 133
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 47, 128, 137
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 278
BsuRI GGCC 2 cut(s) 131, 202
BsuTUI ATCGAT 1 cut(s) 278
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 278
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 11, 50, 131, 183, 202
CviKI_1 RGCY 5 cut(s) 11, 50, 131, 183, 202
EaeI YGGCCR 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 1 cut(s) 158
FaiI YATR 4 cut(s) 47, 59, 156, 266
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 12, 243
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 131, 202
Hin1II CATG 1 cut(s) 158
HinfI GANTC 1 cut(s) 286
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 122, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 128, 137
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 158
LpnPI CCDG 4 cut(s) 48, 113, 145, 217
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 2 cut(s) 12, 243
MaeII ACGT 1 cut(s) 118
MboII GAAGA 1 cut(s) 308
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 185, 254
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 5 cut(s) 123, 165, 175, 187, 192
MluNI TGGCCA 1 cut(s) 131
MnlI CCTC 5 cut(s) 86, 163, 217, 253, 286
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
MseI TTAA 3 cut(s) 86, 164, 174
Msp20I TGGCCA 1 cut(s) 131
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 47, 128, 137
NlaIII CATG 1 cut(s) 158
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 201
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 86, 164, 174
SatI GCNGC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 201
SduI GDGCHC 2 cut(s) 185, 254
SetI ASST 6 cut(s) 52, 121, 174, 185, 228, 244
SfcI CTRYAG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 5 cut(s) 123, 165, 175, 187, 192
SspMI CTAG 2 cut(s) 12, 243
SstI GAGCTC 1 cut(s) 185
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 278
TasI AATT 5 cut(s) 123, 165, 175, 187, 192
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 3 cut(s) 86, 164, 174
Tru9I TTAA 3 cut(s) 86, 164, 174
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 117, 129, 281
TspRI CASTG 1 cut(s) 211
XspI CTAG 2 cut(s) 12, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.