Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Reverse (-)

54315639 .. 54316043

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG396000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGATTGGCTGGAAATGATATTACAGTCAAATCAACTGCTGCTATAGCTTACTGTATAGCAGCAAAACAACTCCTCACAAAGTTAATCTTGTCAGAGAATGAACTGAAGGATGAAGGTGCAATTCTGGTTAGCAAACCATTGGCAAGGGGTCATGGTCAGTTAATTGAGGTTGATTTGAGCTCTAATTCAATTGGAAGGCCCAGTGCAAGACATTTAGCAGAGGCTGTTGTGAACAAACCTAGGTTCAAGTCGCTGAACATAAATGGTAACTTCATATCTGATGATGTAGTGGATGTTTTTAAGATTTTCCACATCTGCTTGGGCATTTGGATGACAATGACCCCAAAGCAATGTCCTAAAAGGCGCCCTTTGGATGAGAGTGACCTCAAAGCAGTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

134

Amino Acids

14.6

Weight (kDa)

8.84

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	192, 250
AluBI	AGCT	2 cut(s)	50, 183
AluI	AGCT	2 cut(s)	50, 183
Alw21I	GWGCWC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	41, 62
AspA2I	CCTAGG	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	201
AvrII	CCTAGG	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	28, 74
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	2 cut(s)	42, 63
BlnI	CCTAGG	1 cut(s)	242
BlsI	GCNGC	2 cut(s)	43, 64
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	4 cut(s)	118, 301, 339, 382
BseMI	GCAATG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	28, 74
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	242
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	28, 56
BstACI	GRCGYC	1 cut(s)	367
BstF5I	GGATG	4 cut(s)	118, 301, 339, 382
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	28, 74
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	118, 301, 339, 382
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	211, 402
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	201
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	5 cut(s)	11, 50, 183, 202, 227
CviKI_1	RGCY	5 cut(s)	11, 50, 183, 202, 227
DinI	GGCGCC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	1 cut(s)	158
FaiI	YATR	5 cut(s)	47, 59, 156, 263, 278
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 355, 387
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	42, 63
FokI	GGATG	4 cut(s)	125, 308, 346, 389
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	42, 63
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	42, 63
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	97, 283
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	103, 110, 192
HpyCH4III	ACNGT	2 cut(s)	28, 56
HpyCH4V	TGCA	2 cut(s)	122, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	367
KasI	GGCGCC	1 cut(s)	366
LpnPI	CCDG	2 cut(s)	113, 217
Lsp1109I	GCAGC	2 cut(s)	28, 74
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	269, 383
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	4 cut(s)	123, 165, 187, 192
Mly113I	GGCGCC	1 cut(s)	367
MnlI	CCTC	4 cut(s)	86, 163, 217, 398
MseI	TTAA	3 cut(s)	86, 164, 303
MslI	CAYNNNNRTG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	47
NarI	GGCGCC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	43, 64
PluTI	GGCGCC	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	86, 164, 303
SatI	GCNGC	2 cut(s)	42, 63
Sau96I	GGNCC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	7 cut(s)	52, 121, 174, 185, 244, 248, 390
SfcI	CTRYAG	1 cut(s)	45
SfoI	GGCGCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	4 cut(s)	123, 165, 187, 192
SspDI	GGCGCC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	28, 56
TasI	AATT	4 cut(s)	123, 165, 187, 192
Tru1I	TTAA	3 cut(s)	86, 164, 303
Tru9I	TTAA	3 cut(s)	86, 164, 303
TscAI	CASTG	2 cut(s)	211, 402
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	2 cut(s)	41, 62
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	3 cut(s)	117, 129, 265
TspRI	CASTG	2 cut(s)	211, 402
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.