Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

19313214 .. 19315368

Gene Structure 2155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAAACTGAGAGAGTTCAGTTGCGGCCTGAAAGACCAAGTTTTCCTGTGGAAGAAATGGACCAAGAGCATGCACCTCCACAGAAGAAAAGCAAGCCAAGGAAGAGAAGACCAAGGTTCTACACCGCTGTTAGGCGATCTACACGCATCCGAAAAACTGTGACACCCTCTCAGAAGAAGGACCTACAGCCGGTACAGATTCCACTCAGTGAGAGTGAGAGTGAAAGCGAAAGAGAAGAGGAGCCTCCACAGTTGGAGGAGAATGTGGAGGAGCCGGCTGTACATGGCGAGAAAACATTGGTTGAAAAAGTGGACTATGCTGTGCTGTTATTGGAAACAATGAGCTCACAGGGTAACAATAGGATCTCTGACTCCTCTGAAATCAGATACAGGAGCTTGTACTTTGAGTCCCAAAAGCAGAATGAGGCTTTGAAAAAGGTGAACCGCGAGCTTTCTTTGAAGTTGCAAGTTGCTCTTGCCAAAATTGAAGGATTTGAGAAAGGGAGTAATGCATCTGTGGAATGGATGACAAAGTTCAAAGATGTGTTGTTGGTTACAAGCTTGTCAAAAGCTTCTGAAATGGCTGCAGCTGTCCAATGTCAAGATCCTAAAGCTGCTTCTTCTTCAAAGAGGAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.44

Weight (kDa)

9.4

Isoelectric Point (pI)

70.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AciI	CCGC	3 cut(s)	25, 126, 445
AclWI	GGATC	2 cut(s)	371, 599
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	195, 282, 401
AfiI	CCNNNNNNNGG	2 cut(s)	132, 190
AgsI	TTSAA	6 cut(s)	305, 433, 460, 488, 538, 627
AluBI	AGCT	7 cut(s)	345, 396, 451, 561, 572, 590, 614
AluI	AGCT	7 cut(s)	345, 396, 451, 561, 572, 590, 614
Alw21I	GWGCWC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	371, 599
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	3 cut(s)	584, 587, 614
AspS9I	GGNCC	2 cut(s)	61, 181
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	61, 181
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	571, 599, 601
BfmI	CTRYAG	2 cut(s)	185, 585
BisI	GCNGC	4 cut(s)	26, 585, 588, 615
BlsI	GCNGC	4 cut(s)	27, 586, 589, 616
Bme18I	GGWCC	2 cut(s)	61, 181
BmgT120I	GGNCC	2 cut(s)	61, 181
BmiI	GGNNCC	2 cut(s)	243, 273
BmsI	GCATC	2 cut(s)	156, 521
BpiI	GAAGAC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	98, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 190
Bse118I	RCCGGY	2 cut(s)	190, 274
BseDI	CCNNGG	2 cut(s)	98, 113
BseGI	GGATG	2 cut(s)	147, 531
BseLI	CCNNNNNNNGG	2 cut(s)	132, 190
BseMII	CTCAG	2 cut(s)	185, 220
BseRI	GAGGAG	4 cut(s)	254, 272, 284, 364
BseXI	GCAGC	3 cut(s)	571, 599, 601
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	191, 275
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	132, 190
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	137, 363, 604
BspACI	CCGC	3 cut(s)	25, 126, 445
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	184, 219
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	243, 273
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	2 cut(s)	371, 599
BsrFI	RCCGGY	2 cut(s)	190, 274
BsrGI	TGTACA	1 cut(s)	280
BssAI	RCCGGY	2 cut(s)	190, 274
BssECI	CCNNGG	2 cut(s)	98, 113
BssMI	GATC	3 cut(s)	137, 363, 604
BssT1I	CCWWGG	2 cut(s)	98, 113
Bst4CI	ACNGT	2 cut(s)	160, 252
Bst6I	CTCTTC	3 cut(s)	98, 231, 629
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	4 cut(s)	72, 95, 276, 449
BstDEI	CTNAG	3 cut(s)	9, 171, 206
BstF5I	GGATG	2 cut(s)	147, 531
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	3 cut(s)	140, 366, 607
BstMBI	GATC	3 cut(s)	137, 363, 604
BstNSI	RCATGY	1 cut(s)	74
BstSFI	CTRYAG	2 cut(s)	185, 585
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	571, 599, 601
BstV2I	GAAGAC	1 cut(s)	115
BstX2I	RGATCY	2 cut(s)	363, 604
BstYI	RGATCY	2 cut(s)	363, 604
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	147, 531
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	4 cut(s)	72, 95, 276, 449
Cfr10I	RCCGGY	2 cut(s)	190, 274
Cfr13I	GGNCC	2 cut(s)	61, 181
Csp6I	GTAC	3 cut(s)	194, 281, 400
CviAII	CATG	2 cut(s)	71, 284
CviQI	GTAC	3 cut(s)	194, 281, 400
DdeI	CTNAG	3 cut(s)	9, 171, 206
DpnI	GATC	3 cut(s)	139, 365, 606
DpnII	GATC	3 cut(s)	137, 363, 604
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	3 cut(s)	98, 231, 629
EarI	CTCTTC	3 cut(s)	98, 231, 629
Ecl136II	GAGCTC	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	98, 113
Eco24I	GRGCYC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	61, 181
Eco53kI	GAGCTC	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	98, 113
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	2 cut(s)	98, 113
FaeI	CATG	2 cut(s)	74, 287
FaiI	YATR	3 cut(s)	72, 285, 318
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	2 cut(s)	70, 283
Fnu4HI	GCNGC	4 cut(s)	26, 585, 588, 615
FokI	GGATG	2 cut(s)	134, 538
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	4 cut(s)	26, 585, 588, 615
GluI	GCNGC	4 cut(s)	26, 585, 588, 615
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	2 cut(s)	191, 275
Hin1II	CATG	2 cut(s)	74, 287
HindIII	AAGCTT	2 cut(s)	559, 570
HinfI	GANTC	3 cut(s)	199, 371, 407
HpaII	CCGG	2 cut(s)	191, 275
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	313, 442
Hpy188I	TCNGA	6 cut(s)	152, 174, 370, 379, 386, 577
Hpy188III	TCNNGA	1 cut(s)	602
Hpy8I	GTNNAC	2 cut(s)	313, 442
HpyAV	CCTTC	2 cut(s)	172, 482
HpyCH4III	ACNGT	2 cut(s)	160, 252
HpyCH4V	TGCA	4 cut(s)	74, 466, 512, 587
HpyF3I	CTNAG	3 cut(s)	9, 171, 206
Hsp92II	CATG	2 cut(s)	74, 287
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	137, 363, 604
LmnI	GCTCC	3 cut(s)	241, 271, 393
LpnPI	CCDG	6 cut(s)	42, 60, 204, 288, 335, 376
Lsp1109I	GCAGC	3 cut(s)	571, 599, 601
LweI	GCATC	2 cut(s)	156, 521
MaeIII	GTNAC	3 cut(s)	160, 353, 553
MalI	GATC	3 cut(s)	139, 365, 606
MboI	GATC	3 cut(s)	137, 363, 604
MboII	GAAGA	8 cut(s)	65, 97, 115, 120, 187, 248, 612, 615
MflI	RGATCY	2 cut(s)	363, 604
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	365, 416
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	9 cut(s)	87, 178, 232, 250, 255, 262, 385, 418, 624
Mph1103I	ATGCAT	1 cut(s)	514
MroNI	GCCGGC	1 cut(s)	274
MspA1I	CMGCKG	2 cut(s)	128, 590
MspI	CCGG	2 cut(s)	191, 275
MvnI	CGCG	1 cut(s)	447
NaeI	GCCGGC	1 cut(s)	276
NdeII	GATC	3 cut(s)	137, 363, 604
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	74, 287
NlaIV	GGNNCC	2 cut(s)	243, 273
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	27, 586, 589, 616
PleI	GAGTC	2 cut(s)	365, 415
PpsI	GAGTC	2 cut(s)	365, 415
PpuMI	RGGWCCY	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	243, 273
PspPI	GGNCC	2 cut(s)	61, 181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	2 cut(s)	363, 604
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	3 cut(s)	195, 282, 401
RsaNI	GTAC	3 cut(s)	194, 281, 400
SacI	GAGCTC	1 cut(s)	347
SatI	GCNGC	4 cut(s)	26, 585, 588, 615
Sau3AI	GATC	3 cut(s)	137, 363, 604
Sau96I	GGNCC	2 cut(s)	61, 181
SchI	GAGTC	2 cut(s)	365, 416
SduI	GDGCHC	1 cut(s)	347
SfaNI	GCATC	2 cut(s)	156, 521
SfcI	CTRYAG	2 cut(s)	185, 585
SinI	GGWCC	2 cut(s)	61, 181
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	25, 126, 445
SstI	GAGCTC	1 cut(s)	347
StyI	CCWWGG	2 cut(s)	98, 113
TaaI	ACNGT	2 cut(s)	160, 252
TasI	AATT	1 cut(s)	483
TatI	WGTACW	2 cut(s)	280, 399
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	584, 587, 614
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	61, 181
XceI	RCATGY	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.