Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004642.1

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

9380 .. 10589

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004642.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcacaagagaatgcacctccacagaagaaaagcaaggcaaggaagaaacggccaaggtactacacagcagttaggcgatcttcacgcatccgaaacactgtgactccctctcaaaaccggagcctacagccagtgcagattacaatcagtgaaagcgagagtgaaagtgacagagaagaggagcctccttgtttggaggagctggctgtccgtggtgagaaaacgttggatgaaaaagtggactatgctgtgcggttattggagactatgagctcacagggtaacaataggatctctggcacttctgaactcagatacagaagtctgtactttgagtcccaaaagcagaatgagaatttgaaaaaggagaaccgcgagctttctttgaagttgcaagttgctcttgccaaaattgaaggatttgagaaagggagtaatgcatctgtggaatggatggcaaaatttaaagatgtgttgttggttacaagcttggcaaaagcttctgaaatggttgcttctcaagatcctaaagcggcttcttcttcaaagagaaagagacatccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.5

Weight (kDa)

9.71

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	256, 376, 536
AclI	AACGTT	1 cut(s)	227
AclWI	GGATC	2 cut(s)	302, 521
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	358, 464
AfaI	GTAC	2 cut(s)	62, 332
AgsI	TTSAA	4 cut(s)	364, 391, 419, 549
AluBI	AGCT	5 cut(s)	205, 276, 382, 492, 503
AluI	AGCT	5 cut(s)	205, 276, 382, 492, 503
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	260, 553
AlwI	GGATC	2 cut(s)	302, 521
AoxI	GGCC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	358, 464
AsuHPI	GGTGA	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	310, 343
BanII	GRGCYC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	278
BccI	CCATC	1 cut(s)	451
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	260, 553
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	125, 186
BmsI	GCATC	2 cut(s)	99, 452
BpuEI	CTTGAG	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	56, 214
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bse1I	ACTGG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	56, 214
BseGI	GGATG	4 cut(s)	90, 238, 462, 562
BseJI	GATNNNNATC	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	197, 215
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	260, 553
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	80, 294, 526
BspACI	CCGC	3 cut(s)	256, 376, 536
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	125, 186
BspPI	GGATC	2 cut(s)	302, 521
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	56, 214
BssMI	GATC	3 cut(s)	80, 294, 526
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	207, 380
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	4 cut(s)	90, 238, 462, 562
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	83, 297, 529
BstMAI	GTCTC	2 cut(s)	260, 553
BstMBI	GATC	3 cut(s)	80, 294, 526
BstSFI	CTRYAG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	294, 526
BstYI	RGATCY	2 cut(s)	294, 526
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	90, 238, 462, 562
BtsIMutI	CAGTG	3 cut(s)	99, 141, 157
Cac8I	GCNNGC	2 cut(s)	207, 380
Csp6I	GTAC	2 cut(s)	61, 331
CviQI	GTAC	2 cut(s)	61, 331
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	3 cut(s)	82, 296, 528
DpnII	GATC	3 cut(s)	80, 294, 526
DraI	TTTAAA	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	56
FaiI	YATR	2 cut(s)	249, 272
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	4 cut(s)	77, 245, 469, 549
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	121
HindIII	AAGCTT	2 cut(s)	490, 501
HinfI	GANTC	2 cut(s)	106, 338
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	4 cut(s)	95, 310, 317, 508
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	4 cut(s)	17, 139, 397, 443
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	80, 294, 526
LmnI	GCTCC	3 cut(s)	123, 184, 202
LpnPI	CCDG	5 cut(s)	134, 147, 191, 266, 285
LweI	GCATC	2 cut(s)	99, 452
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	4 cut(s)	103, 170, 284, 484
MalI	GATC	3 cut(s)	82, 296, 528
MboI	GATC	3 cut(s)	80, 294, 526
MboII	GAAGA	6 cut(s)	40, 58, 75, 191, 534, 537
MflI	RGATCY	2 cut(s)	294, 526
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	358, 414, 464
MlyI	GAGTC	2 cut(s)	100, 347
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	5 cut(s)	30, 121, 175, 193, 198
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	1 cut(s)	468
MspI	CCGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	19
MvnI	CGCG	1 cut(s)	378
NdeII	GATC	3 cut(s)	80, 294, 526
NlaIV	GGNNCC	2 cut(s)	125, 186
NmuCI	GTSAC	2 cut(s)	103, 170
NsiI	ATGCAT	1 cut(s)	445
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	2 cut(s)	100, 346
PpsI	GAGTC	2 cut(s)	100, 346
Psp124BI	GAGCTC	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	125, 186
PsuI	RGATCY	2 cut(s)	294, 526
RsaI	GTAC	2 cut(s)	62, 332
RsaNI	GTAC	2 cut(s)	61, 331
SacI	GAGCTC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	3 cut(s)	80, 294, 526
SchI	GAGTC	2 cut(s)	100, 347
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	8 cut(s)	22, 62, 207, 230, 278, 384, 494, 505
SfaNI	GCATC	2 cut(s)	99, 452
SfcI	CTRYAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
Sse9I	AATT	3 cut(s)	358, 414, 464
SsiI	CCGC	3 cut(s)	256, 376, 536
SstI	GAGCTC	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	230
TasI	AATT	3 cut(s)	358, 414, 464
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	3 cut(s)	106, 141, 157
TseFI	GTSAC	2 cut(s)	103, 170
Tsp45I	GTSAC	2 cut(s)	103, 170
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	106, 141, 157
XapI	RAATTY	2 cut(s)	358, 464
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.