Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

5879069 .. 5880994

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCCGCCACACTTGCTGCTCATCACTTGCCCTGTATTTGCTTCAATGAACGAAGAAGAAGTGTCTCGCATGCGTGAAGGCACAGATCCTTTATCTGAGAATGCGGAGGGGCACCCTGAAGGTTTGCAGTTGGAGATAATGAACCAGAACCACGAAAATCCAGACCCTCTGATGGAGAAAACAACCAAAACTTGTTTAAGGAAGAAAACAAAGTACAATTGTGCTGTTGTTAGGCGATCCTTGCGTTTCCAAAATGGTATTCTGCCTGCTGGAAACGAGAATACAGAACCTGTGCTTGAAGATACAACCGCTGGCGAAAGTGGAAGTGCAGAAGAACAACCTACCCATAAAATGCACGGGTCAACCTCAGGCGAGAAAAGCTTGGAAGAAAAAGTTGACTATATTATGCAACTTTTGGAAGCAAGGAACTCAAAGGCAGGGGGTAAACACTCATCCTTCTGTGAAAACCCAGAGTTGATGTACAAAAGATCATATGCAGATTCCCAAAAGATTGAGGCTTTAGCAAACGAAAACCATAAGCTATCGATGAAGTTGGAAATTGCTCTTGCCAAACTTGAGGCATACGAGAGCAGGACTCATGCATTTTCTGAAATGGCGGAGAAATTGAAGGATGTGATTGTAGTTTCAAATTTGTCAAAAGTTACAGAAACTGCAGTTAATCTGTCATCTCAGACGGCACATGGAGCTCTTGTGCCACAGGAGGAGTTTCTTTCGCATTTCCTTAACCGGAAAAGGCCGATTGCTAAGTCACCCAAAGCTGCAGCAAAGAGAAAGAAACAAGAGAAGAAAGCAAATCGAAGGTACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

30.95

Weight (kDa)

7.68

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AciI	CCGC	4 cut(s)	5, 104, 309, 617
AclWI	GGATC	2 cut(s)	80, 231
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	3 cut(s)	215, 482, 824
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	45, 299, 628, 648
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	4 cut(s)	381, 541, 707, 779
AluI	AGCT	4 cut(s)	381, 541, 707, 779
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	80, 231
AlwNI	CAGNNNCTG	2 cut(s)	290, 671
AoxI	GGCC	1 cut(s)	755
ApeKI	GCWGC	3 cut(s)	16, 779, 782
ApoI	RAATTY	1 cut(s)	649
AsuHPI	GGTGA	1 cut(s)	762
AxyI	CCTNAGG	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	3 cut(s)	3, 766, 794
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	672, 780
BisI	GCNGC	4 cut(s)	5, 17, 780, 783
BlsI	GCNGC	4 cut(s)	6, 18, 781, 784
BmiI	GGNNCC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	580, 612
BpuEI	CTTGAG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	545
BsaWI	WCCGGW	1 cut(s)	747
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	545
BseGI	GGATG	2 cut(s)	452, 637
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	87, 381, 704
BseRI	GAGGAG	1 cut(s)	737
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	3, 766, 794
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	757
BshNI	GGYRCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	748
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	757
Bsp1286I	GDGCHC	2 cut(s)	114, 709
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	85, 236, 488
BspACI	CCGC	4 cut(s)	5, 104, 309, 617
BspANI	GGCC	1 cut(s)	757
BspCNI	CTCAG	3 cut(s)	88, 380, 703
BspDI	ATCGAT	1 cut(s)	545
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	2 cut(s)	676, 784
BspPI	GGATC	2 cut(s)	80, 231
BspT107I	GGYRCC	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	480
BssMI	GATC	3 cut(s)	85, 236, 488
Bst4CI	ACNGT	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	3 cut(s)	71, 267, 313
BstDEI	CTNAG	4 cut(s)	96, 367, 690, 765
BstF5I	GGATG	2 cut(s)	452, 637
BstKTI	GATC	3 cut(s)	88, 239, 491
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	85, 236, 488
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 241, 378, 704
BstNSI	RCATGY	1 cut(s)	73
BstSFI	CTRYAG	2 cut(s)	672, 780
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	3, 766, 794
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	545
Bsu36I	CCTNAGG	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	757
BsuTUI	ATCGAT	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	452, 637
Cac8I	GCNNGC	3 cut(s)	71, 267, 313
CaiI	CAGNNNCTG	2 cut(s)	290, 671
ClaI	ATCGAT	1 cut(s)	545
Csp6I	GTAC	3 cut(s)	214, 481, 823
CviAII	CATG	3 cut(s)	70, 599, 701
CviJI	RGCY	6 cut(s)	381, 518, 541, 707, 757, 779
CviKI_1	RGCY	6 cut(s)	381, 518, 541, 707, 757, 779
CviQI	GTAC	3 cut(s)	214, 481, 823
DdeI	CTNAG	4 cut(s)	96, 367, 690, 765
DpnI	GATC	3 cut(s)	87, 238, 490
DpnII	GATC	3 cut(s)	85, 236, 488
EciI	GGCGGA	1 cut(s)	632
Ecl136II	GAGCTC	1 cut(s)	707
Eco24I	GRGCYC	1 cut(s)	709
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	707
EcoT22I	ATGCAT	1 cut(s)	604
EcoT38I	GRGCYC	1 cut(s)	709
FaeI	CATG	3 cut(s)	73, 602, 704
FatI	CATG	3 cut(s)	69, 598, 700
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	4 cut(s)	5, 17, 780, 783
FokI	GGATG	2 cut(s)	439, 644
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	4 cut(s)	5, 17, 780, 783
GluI	GCNGC	4 cut(s)	5, 17, 780, 783
HaeIII	GGCC	1 cut(s)	757
HapII	CCGG	1 cut(s)	748
Hin1II	CATG	3 cut(s)	73, 602, 704
HincII	GTYRAC	2 cut(s)	363, 397
HindII	GTYRAC	2 cut(s)	363, 397
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	2 cut(s)	500, 595
HpaII	CCGG	1 cut(s)	748
HphI	GGTGA	1 cut(s)	762
Hpy166II	GTNNAC	3 cut(s)	363, 397, 446
Hpy188I	TCNGA	4 cut(s)	97, 171, 610, 693
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	363, 397, 446
HpyAV	CCTTC	5 cut(s)	71, 113, 466, 622, 813
HpyCH4III	ACNGT	1 cut(s)	827
HpyCH4V	TGCA	8 cut(s)	127, 329, 355, 409, 497, 602, 674, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 241, 378, 704
HpyF3I	CTNAG	4 cut(s)	96, 367, 690, 765
Hsp92II	CATG	3 cut(s)	73, 602, 704
Kzo9I	GATC	3 cut(s)	85, 236, 488
LmnI	GCTCC	1 cut(s)	704
Lsp1109I	GCAGC	3 cut(s)	3, 766, 794
MaeIII	GTNAC	2 cut(s)	661, 768
MalI	GATC	3 cut(s)	87, 238, 490
MboI	GATC	3 cut(s)	85, 236, 488
MboII	GAAGA	7 cut(s)	65, 68, 214, 311, 344, 398, 817
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	114, 709
MluCI	AATT	4 cut(s)	217, 558, 623, 649
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	2 cut(s)	111, 534
MnlI	CCTC	6 cut(s)	100, 177, 376, 508, 571, 715
Mph1103I	ATGCAT	1 cut(s)	604
MseI	TTAA	3 cut(s)	197, 678, 744
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	748
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	13, 241, 378, 704
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	3 cut(s)	85, 236, 488
NlaIII	CATG	3 cut(s)	73, 602, 704
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	768
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	73
PaeI	GCATGC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	6, 18, 781, 784
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	709
PspN4I	GGNNCC	1 cut(s)	113
PstI	CTGCAG	2 cut(s)	676, 784
PstNI	CAGNNNCTG	2 cut(s)	290, 671
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	3 cut(s)	215, 482, 824
RsaNI	GTAC	3 cut(s)	214, 481, 823
SacI	GAGCTC	1 cut(s)	709
SaqAI	TTAA	3 cut(s)	197, 678, 744
SatI	GCNGC	4 cut(s)	5, 17, 780, 783
Sau3AI	GATC	3 cut(s)	85, 236, 488
SchI	GAGTC	1 cut(s)	589
SduI	GDGCHC	2 cut(s)	114, 709
SetI	ASST	9 cut(s)	124, 292, 343, 368, 383, 543, 709, 781, 824
SfcI	CTRYAG	2 cut(s)	672, 780
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	4 cut(s)	217, 558, 623, 649
SsiI	CCGC	4 cut(s)	5, 104, 309, 617
SstI	GAGCTC	1 cut(s)	709
TaaI	ACNGT	1 cut(s)	827
TaqI	TCGA	2 cut(s)	545, 817
TasI	AATT	4 cut(s)	217, 558, 623, 649
TatI	WGTACW	2 cut(s)	213, 480
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	3 cut(s)	197, 678, 744
Tru9I	TTAA	3 cut(s)	197, 678, 744
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	3 cut(s)	16, 779, 782
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	3 cut(s)	62, 155, 563
XapI	RAATTY	1 cut(s)	649
XceI	RCATGY	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.