Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

52553251 .. 52555272

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTCAAACGCCTAGGTCCACTAATCTGAAAACTGAGAGAGTTCAGTCACAGCCTGAAAGACCAAATCTTCCTACGGAAGAAATGGCACAAGAGAATGCACCTCCACAGAAGAAAAGCAAGGCAAGGAAGAAACGGCCAAGGTACTACACAGCAGTTAGGCGATCTTCACGCATCCGAAACACTGTGACTCCCTCTCAAAACCGGAGCCTACAGCCAGTGCAGATTACAATCAGTGAAAGCGAGAGTGAAAGTGACAGAGAAGAGGAGCCTCCTTGTTTGGAGGAGCTGGCTGTCCGTGGTGAGAAAACGTTGGATGAAAAAGTGGACTATGCTGTGCAGTTATTGGAGACTATGAGCTCACAGGGTAACAATAGGATCTCTGGCGCTTCTGAACTCAGATACAGAAGTCTGTACTTTGAGTCCCAAAAGCAGAATGAGAATTTGAAAAAGCAGAACCGCGAGCTTTCTTTGAAGTTGCAAGTTGCTCTTGCCAAAATTGAAGGATTTGAGAAAGGGAGTAATGCGTCTGTGGAATGGATGGCAAAATTTAAAGATGTGTTGTTGGTTACAAGCTTGGCAAAAGCTTCTGAAATGGTTGCTTCTCAAGATCCTAAAGCGGCTTCTTCTTCAAAGAGAAAGAGACATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.66

Weight (kDa)

9.68

Isoelectric Point (pI)

70.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	462
AciI	CCGC	2 cut(s)	460, 620
AclI	AACGTT	1 cut(s)	311
AclWI	GGATC	2 cut(s)	386, 605
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	442, 548
AfaI	GTAC	2 cut(s)	146, 416
AgsI	TTSAA	4 cut(s)	448, 475, 503, 633
AluBI	AGCT	5 cut(s)	289, 360, 466, 576, 587
AluI	AGCT	5 cut(s)	289, 360, 466, 576, 587
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	2 cut(s)	344, 637
AlwI	GGATC	2 cut(s)	386, 605
AoxI	GGCC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	442, 548
AspA2I	CCTAGG	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	18
AvrII	CCTAGG	1 cut(s)	14
BaeI	ACNNNNGTAYC	2 cut(s)	394, 427
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	344, 637
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	390
BisI	GCNGC	1 cut(s)	621
BlnI	CCTAGG	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	622
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	209, 270
BmsI	GCATC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	14, 140, 298
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bse1I	ACTGG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	14, 140, 298
BseGI	GGATG	4 cut(s)	174, 322, 546, 646
BseJI	GATNNNNATC	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	27, 412
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	281, 299
BsgI	GTGCAG	2 cut(s)	242, 359
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	344, 637
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	164, 378, 610
BspACI	CCGC	2 cut(s)	460, 620
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	28, 411
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	209, 270
BspPI	GGATC	2 cut(s)	386, 605
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	14, 140, 298
BssMI	GATC	3 cut(s)	164, 378, 610
BssT1I	CCWWGG	2 cut(s)	14, 140
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	291, 464
BstDEI	CTNAG	2 cut(s)	36, 398
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	4 cut(s)	174, 322, 546, 646
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	3 cut(s)	167, 381, 613
BstMAI	GTCTC	2 cut(s)	344, 637
BstMBI	GATC	3 cut(s)	164, 378, 610
BstSFI	CTRYAG	1 cut(s)	212
BstUI	CGCG	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	378, 610
BstYI	RGATCY	2 cut(s)	378, 610
BsuRI	GGCC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	174, 322, 546, 646
BtsIMutI	CAGTG	3 cut(s)	183, 225, 241
Cac8I	GCNNGC	2 cut(s)	291, 464
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	145, 415
CviQI	GTAC	2 cut(s)	145, 415
DdeI	CTNAG	2 cut(s)	36, 398
DpnI	GATC	3 cut(s)	166, 380, 612
DpnII	GATC	3 cut(s)	164, 378, 610
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	360
Eco130I	CCWWGG	2 cut(s)	14, 140
Eco24I	GRGCYC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	14, 140
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	2 cut(s)	14, 140
FaiI	YATR	2 cut(s)	333, 356
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	621
FokI	GGATG	4 cut(s)	161, 329, 553, 633
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	621
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HindIII	AAGCTT	2 cut(s)	574, 585
HinfI	GANTC	2 cut(s)	190, 422
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	21, 328
Hpy188I	TCNGA	5 cut(s)	30, 179, 394, 401, 592
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	2 cut(s)	21, 328
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	4 cut(s)	101, 223, 340, 481
HpyF3I	CTNAG	2 cut(s)	36, 398
HpySE526I	ACGT	1 cut(s)	311
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	164, 378, 610
LmnI	GCTCC	3 cut(s)	207, 268, 286
LpnPI	CCDG	6 cut(s)	69, 218, 231, 275, 350, 369
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	5 cut(s)	48, 187, 254, 368, 568
MalI	GATC	3 cut(s)	166, 380, 612
MboI	GATC	3 cut(s)	164, 378, 610
MboII	GAAGA	8 cut(s)	62, 92, 124, 142, 159, 275, 618, 621
MflI	RGATCY	2 cut(s)	378, 610
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	3 cut(s)	442, 498, 548
MlyI	GAGTC	2 cut(s)	184, 431
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	114, 205, 259, 277, 282
MseI	TTAA	1 cut(s)	552
MspI	CCGG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	103
MvnI	CGCG	1 cut(s)	462
NdeII	GATC	3 cut(s)	164, 378, 610
NlaIV	GGNNCC	2 cut(s)	209, 270
NmuCI	GTSAC	3 cut(s)	48, 187, 254
PctI	GAATGC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	622
PleI	GAGTC	2 cut(s)	184, 430
PpsI	GAGTC	2 cut(s)	184, 430
Psp124BI	GAGCTC	1 cut(s)	362
Psp1406I	AACGTT	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	209, 270
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	378, 610
RsaI	GTAC	2 cut(s)	146, 416
RsaNI	GTAC	2 cut(s)	145, 415
SacI	GAGCTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	1 cut(s)	621
Sau3AI	GATC	3 cut(s)	164, 378, 610
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	2 cut(s)	184, 431
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	9 cut(s)	20, 106, 146, 291, 314, 362, 468, 578, 589
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	3 cut(s)	442, 498, 548
SsiI	CCGC	2 cut(s)	460, 620
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	14, 140
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	314
TasI	AATT	3 cut(s)	442, 498, 548
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	623
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	3 cut(s)	190, 225, 241
TseFI	GTSAC	3 cut(s)	48, 187, 254
Tsp45I	GTSAC	3 cut(s)	48, 187, 254
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	2 cut(s)	92, 287
TspRI	CASTG	3 cut(s)	190, 225, 241
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	2 cut(s)	442, 548
XmaJI	CCTAGG	1 cut(s)	14
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.