Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

21122853 .. 21125569

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G241200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGTAGGAGACCAAATGCTTCAAGGAAGGACGGAACGGTTCATACGCCTAAAGCCACACAACCATTATCTGAAACTGAGGAACCACAGCCTGAGGGGCCAAATCCTTCTTCAGAGCAAATGGACCAGCAACATGAAAACGCAAGCCCTCTGCTGGAGAAAACTAACTCAATGCATATGATGCAAGAAAAATCCACTAAATCCTCTCGTTCAAAAAAGAGACCGAAGCAGCTCAATTCTGTTGTTAGGCGATCATTACGCATTCGAAACTGTGATATGCCTGTTCAAAACCAGAACATTGATCCCGTGATTGAAAACATTAGTGATAGTGAGATGGAAGAGGGGCAACCTCTTTTGGAGGAACAACCAACCTTGGGTGAGAAAAACATGGAAGAAAAAATTGATTATCTTATACAATTAGTGGAAACACAGAACTCAAAGGCAAAGAAGAGAAGCCCCGTCTTTTCTAAATCTCCAGAGATAGGATGCAAAAGCTTGTATATAAACTCCCAAATGAAGATTGAGGCTTTGAAAAATGAAAACCATGAGCTTTCTTTGAAGTTGGAAGTAGCTCTTGGCAAACTTGAAGGGTATGAGAAAGGGACTTGTGCATTTTCTGGAGTGATGGATAAAATGAAGGATGTGATTTTGGTCTCAGCTTTATCAAAAGCTACTGAAAGAGTTGTAAATGTCTCATCTCAAGCAATAGGTGATGATGCTCTTTCTCCCCAGGAAGTTCAAGATCGCAAGTCTATAGCTAAGAGAAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.83

Weight (kDa)

8.29

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	96
AfiI	CCNNNNNNNGG	3 cut(s)	154, 374, 482
AgsI	TTSAA	8 cut(s)	24, 213, 287, 314, 532, 559, 587, 740
AjnI	CCWGG	1 cut(s)	729
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 558, 590
AluBI	AGCT	7 cut(s)	232, 495, 550, 572, 659, 671, 758
AluI	AGCT	7 cut(s)	232, 495, 550, 572, 659, 671, 758
Alw26I	GTCTC	4 cut(s)	4, 214, 658, 697
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	98, 124
AsuHPI	GGTGA	2 cut(s)	389, 722
AsuII	TTCGAA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	124
AxyI	CCTNAGG	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	328, 619
BciT130I	CCWGG	1 cut(s)	731
BcoDI	GTCTC	4 cut(s)	4, 214, 658, 697
BfmI	CTRYAG	1 cut(s)	753
BglI	GCCNNNNNGGC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	98, 124
BmiI	GGNNCC	2 cut(s)	84, 99
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	3 cut(s)	171, 476, 706
BpmI	CTGGAG	3 cut(s)	176, 459, 639
Bpu14I	TTCGAA	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	684
BsaI	GGTCTC	3 cut(s)	4, 214, 658
BsaJI	CCNNGG	2 cut(s)	372, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 374, 482
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	2 cut(s)	372, 729
BseGI	GGATG	2 cut(s)	491, 646
BseLI	CCNNNNNNNGG	3 cut(s)	154, 374, 482
BseMII	CTCAG	3 cut(s)	69, 84, 669
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	3 cut(s)	154, 374, 482
BsmAI	GTCTC	4 cut(s)	4, 214, 658, 697
BsmFI	GGGAC	1 cut(s)	616
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	100
Bso31I	GGTCTC	3 cut(s)	4, 214, 658
Bsp119I	TTCGAA	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	251, 301, 742
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	3 cut(s)	70, 85, 668
BspLI	GGNNCC	2 cut(s)	84, 99
BspPI	GGATC	1 cut(s)	296
BspT104I	TTCGAA	1 cut(s)	265
BspTNI	GGTCTC	3 cut(s)	4, 214, 658
BssECI	CCNNGG	2 cut(s)	372, 729
BssMI	GATC	3 cut(s)	251, 301, 742
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	40, 272
Bst6I	CTCTTC	2 cut(s)	333, 443
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	4 cut(s)	78, 93, 655, 759
BstF5I	GGATG	2 cut(s)	491, 646
BstKTI	GATC	3 cut(s)	254, 304, 745
BstMAI	GTCTC	4 cut(s)	4, 214, 658, 697
BstMBI	GATC	3 cut(s)	251, 301, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 181
BstNI	CCWGG	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	491, 646
Cac8I	GCNNGC	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	98, 124
CviAII	CATG	3 cut(s)	134, 388, 545
DdeI	CTNAG	4 cut(s)	78, 93, 655, 759
DpnI	GATC	3 cut(s)	253, 303, 744
DpnII	GATC	3 cut(s)	251, 301, 742
Eam1104I	CTCTTC	2 cut(s)	333, 443
EarI	CTCTTC	2 cut(s)	333, 443
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	3 cut(s)	4, 214, 658
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	137, 391, 548
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	3 cut(s)	133, 387, 544
FauNDI	CATATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	498, 653
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
GsuI	CTGGAG	3 cut(s)	176, 459, 639
HaeIII	GGCC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	137, 391, 548
HindIII	AAGCTT	1 cut(s)	493
HphI	GGTGA	2 cut(s)	389, 722
Hpy188I	TCNGA	2 cut(s)	73, 115
Hpy188III	TCNNGA	3 cut(s)	476, 618, 740
HpyAV	CCTTC	4 cut(s)	22, 117, 581, 631
HpyCH4III	ACNGT	2 cut(s)	40, 272
HpyCH4V	TGCA	4 cut(s)	175, 184, 489, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 181
HpyF3I	CTNAG	4 cut(s)	78, 93, 655, 759
Hsp92II	CATG	3 cut(s)	137, 391, 548
Kzo9I	GATC	3 cut(s)	251, 301, 742
LpnPI	CCDG	9 cut(s)	105, 140, 140, 294, 305, 489, 603, 716, 743
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	3 cut(s)	171, 476, 706
MalI	GATC	3 cut(s)	253, 303, 744
MboI	GATC	3 cut(s)	251, 301, 742
MboII	GAAGA	5 cut(s)	102, 350, 404, 460, 529
MluCI	AATT	3 cut(s)	235, 399, 416
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	8 cut(s)	73, 88, 159, 214, 334, 352, 360, 517
Mph1103I	ATGCAT	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	731
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	2 cut(s)	97, 181
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	3 cut(s)	251, 301, 742
NlaIII	CATG	3 cut(s)	137, 391, 548
NlaIV	GGNNCC	2 cut(s)	84, 99
NsiI	ATGCAT	1 cut(s)	177
NspV	TTCGAA	1 cut(s)	265
PctI	GAATGC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	84, 99
PspPI	GGNCC	2 cut(s)	98, 124
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	3 cut(s)	251, 301, 742
Sau96I	GGNCC	2 cut(s)	98, 124
ScrFI	CCNGG	1 cut(s)	731
SfaNI	GCATC	3 cut(s)	171, 476, 706
SfcI	CTRYAG	1 cut(s)	753
SfuI	TTCGAA	1 cut(s)	265
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	3 cut(s)	235, 399, 416
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	40, 272
TaqI	TCGA	1 cut(s)	265
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	235, 399, 416
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	5 cut(s)	32, 150, 530, 552, 650
TspGWI	ACGGA	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.