Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

52958357 .. 52960487

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTCAAACGCCTAGGTCCACTAATCTGAAAACTGAGAGAGTTCAGTCACAGCCTGAAAGACCAAATCTTCCTACGGAAGAAATGGCACAAGAGAATGCACCTCCACAGAAGAAAAGCAAGGCAAGGAAGAAACGGCCAAGGTACTACACAGCAGTTAGGCGATCTTCACGCATCCGAAACACTGTGACTCCCTCTCAAAACCGGAGCCTACAGCCAGTGCAGATTACAATCAGTGAAAGCGAGAGTGAAAGTGACAGAGAAGAGGAGCCTCCTTGTTTGGAGGAGCTGGCTGTCCGTGGTGAGAAAACGTTGGATGAAAAAGTGGACTATGCTGTGCGGTTATTGGAGACTATGAGCTCACAGGGTAACAATAGGATCTCTGGCACTTCTGAACTCAGATACAGAAGTCTGTACTTTGAGTCCCAAAAGCAGGTTATAAACTTGTCCAATTTTTTATTTGTCATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

18.16

Weight (kDa)

9.47

Isoelectric Point (pI)

77.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	1 cut(s)	340
AclI	AACGTT	1 cut(s)	311
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	137
AfaI	GTAC	2 cut(s)	146, 416
AfiI	CCNNNNNNNGG	1 cut(s)	433
AluBI	AGCT	2 cut(s)	289, 360
AluI	AGCT	2 cut(s)	289, 360
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	1 cut(s)	137
AspA2I	CCTAGG	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	18
AvrII	CCTAGG	1 cut(s)	14
BaeI	ACNNNNGTAYC	2 cut(s)	394, 427
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	2 cut(s)	15, 472
BfmI	CTRYAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	424
BlnI	CCTAGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	209, 270
BmsI	GCATC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	14, 140, 298
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	14, 140, 298
BseGI	GGATG	2 cut(s)	174, 322
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	27, 412
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	281, 299
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	164, 378
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	28, 411
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	209, 270
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	14, 140, 298
BssMI	GATC	2 cut(s)	164, 378
BssT1I	CCWWGG	2 cut(s)	14, 140
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	36, 398
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	174, 322
BstKTI	GATC	2 cut(s)	167, 381
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	164, 378
BstSFI	CTRYAG	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	174, 322
BtsIMutI	CAGTG	3 cut(s)	183, 225, 241
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	145, 415
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	9 cut(s)	5, 55, 139, 210, 217, 271, 289, 293, 360
CviKI_1	RGCY	9 cut(s)	5, 55, 139, 210, 217, 271, 289, 293, 360
CviQI	GTAC	2 cut(s)	145, 415
DdeI	CTNAG	2 cut(s)	36, 398
DpnI	GATC	2 cut(s)	166, 380
DpnII	GATC	2 cut(s)	164, 378
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	360
Eco130I	CCWWGG	2 cut(s)	14, 140
Eco24I	GRGCYC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	14, 140
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	2 cut(s)	14, 140
FaeI	CATG	1 cut(s)	469
FaiI	YATR	4 cut(s)	333, 356, 440, 467
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	1 cut(s)	465
FokI	GGATG	2 cut(s)	161, 329
FriOI	GRGCYC	1 cut(s)	362
FspBI	CTAG	2 cut(s)	15, 472
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	469
HinfI	GANTC	2 cut(s)	190, 422
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	21, 328
Hpy188I	TCNGA	4 cut(s)	30, 179, 394, 401
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	2 cut(s)	21, 328
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	101, 223
HpyF3I	CTNAG	2 cut(s)	36, 398
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	164, 378
LmnI	GCTCC	3 cut(s)	207, 268, 286
LpnPI	CCDG	7 cut(s)	69, 218, 231, 275, 350, 369, 419
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	15, 472
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	4 cut(s)	48, 187, 254, 368
MalI	GATC	2 cut(s)	166, 380
MboI	GATC	2 cut(s)	164, 378
MboII	GAAGA	6 cut(s)	62, 92, 124, 142, 159, 275
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	184, 431
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	114, 205, 259, 277, 282
MspI	CCGG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	103
NdeII	GATC	2 cut(s)	164, 378
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	2 cut(s)	209, 270
NmuCI	GTSAC	3 cut(s)	48, 187, 254
PagI	TCATGA	1 cut(s)	465
PctI	GAATGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	184, 430
PpsI	GAGTC	2 cut(s)	184, 430
PsiI	TTATAA	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	362
Psp1406I	AACGTT	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	209, 270
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	2 cut(s)	146, 416
RsaNI	GTAC	2 cut(s)	145, 415
SacI	GAGCTC	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	164, 378
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	2 cut(s)	184, 431
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	7 cut(s)	20, 106, 146, 291, 314, 362, 438
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	451
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	2 cut(s)	15, 472
SstI	GAGCTC	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	14, 140
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	314
TasI	AATT	1 cut(s)	451
TatI	WGTACW	1 cut(s)	414
TscAI	CASTG	3 cut(s)	190, 225, 241
TseFI	GTSAC	3 cut(s)	48, 187, 254
Tsp45I	GTSAC	3 cut(s)	48, 187, 254
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	2 cut(s)	92, 287
TspRI	CASTG	3 cut(s)	190, 225, 241
VpaK11BI	GGWCC	1 cut(s)	18
XmaJI	CCTAGG	1 cut(s)	14
XspI	CTAG	2 cut(s)	15, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.