Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

16637449 .. 16640944

Gene Structure 3496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G108100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCCCCCCCAAACCAGACGCAGACTTGCTCAATCTGTGAAAAGAGGGAGAAAGATGGGTAGGAGAGCTGCTTCAAGGAACGAAGAAATGGCTCACATGCCTCAAGGCACAAATCCCTCACCTGAAAGAGTGGAACCGCGGCCTGAAGCTCCGCGTTTGGAGATGATAGAGCAAACTAACTCAAAGCTTCCTGAAGCTCCACGTTTGGAGATGATACAGCAAACTAACTCAAAGCTTCCAATTGAAGAACAAGGTACCAAAACATCTAGGAAAAGGCCAAAGCGCTCTGATGCTGTTGTTAGGCGATCTTTACGTATCCAAGACAGTATTGTGCCTACTCAAAATCAGAATATGGAGCATGTGATTGAAGATACAACCGTTAGCGAAGGTGAAAATGAAGATGAGCAGCCTGCTCTTAAAATGCACGGGTCAACCTCAGGGGAGAAAAGCTTGGAAGAAAAAGTTAACTATCTTGTACAACTGTTGGATACAATGAACTCAAAGGCAAGGAATAAAAACTCCGACTTCTGCGAAAGCCCAGCTTCAATGTACAAAAGCTTGTATGCAGATTCCCAAAAGATTAAGGCGTTAGAAACTGAAAACCATCAACTTTCTTTGAAGTTGGAAGTTGCTCTTGCCAAACTTGAAGCATATGAGAATGGGACTCGTGCTTTCTCTGAAATGGCTGATAAATTGAAGGATTTGATTTTAGTCTCAAATTTGGCAAAAGCTACTGAAACTGCAGTAAATCTGTCATCTCAAACAGCACGTGGAGCTTGTTCTCGAAAAAAAAAAACAGCACTTGGAGTTGTTGATCCTCAGGAGGACGTGCTCTCACATTTAATTAATCCAAAAGGGCCAACTGTTGAAGGACCAAAAATTGCTGCTAAGAGAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.55

Weight (kDa)

9.48

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AccII	CGCG	2 cut(s)	139, 154
AciI	CCGC	3 cut(s)	137, 139, 152
AclWI	GGATC	1 cut(s)	809
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	2 cut(s)	165, 213
AcvI	CACGTG	1 cut(s)	770
AfaI	GTAC	3 cut(s)	256, 477, 551
AfeI	AGCGCT	1 cut(s)	284
AgsI	TTSAA	8 cut(s)	75, 245, 368, 546, 619, 647, 697, 869
AjiI	CACGTC	1 cut(s)	829
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	1 cut(s)	809
Aor51HI	AGCGCT	1 cut(s)	284
AoxI	GGCC	3 cut(s)	140, 275, 857
ApeKI	GCWGC	3 cut(s)	68, 406, 884
ApoI	RAATTY	1 cut(s)	718
AseI	ATTAAT	1 cut(s)	846
Asp718I	GGTACC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	857, 872
AsuHPI	GGTGA	2 cut(s)	111, 401
AvaII	GGWCC	1 cut(s)	872
AxyI	CCTNAGG	2 cut(s)	436, 819
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BanI	GGYRCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	666
BbrPI	CACGTG	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	3 cut(s)	55, 418, 871
BccI	CCATC	2 cut(s)	49, 612
BciVI	GTATCC	2 cut(s)	326, 481
BcoDI	GTCTC	1 cut(s)	718
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	286
BfuI	GTATCC	2 cut(s)	326, 481
BisI	GCNGC	4 cut(s)	69, 140, 407, 885
BlsI	GCNGC	4 cut(s)	70, 141, 408, 886
Bme18I	GGWCC	1 cut(s)	872
BmgBI	CACGTC	1 cut(s)	829
BmgT120I	GGNCC	2 cut(s)	857, 872
BmiI	GGNNCC	2 cut(s)	135, 256
BmsI	GCATC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	87
BsaAI	YACGTR	2 cut(s)	314, 770
BsaJI	CCNNGG	1 cut(s)	137
Bse21I	CCTNAGG	2 cut(s)	436, 819
BseDI	CCNNGG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	450, 833
BseXI	GCAGC	3 cut(s)	55, 418, 871
BseYI	CCCAGC	1 cut(s)	538
Bsh1236I	CGCG	2 cut(s)	139, 154
BshFI	GGCC	3 cut(s)	142, 277, 859
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	834
BslFI	GGGAC	1 cut(s)	676
BsmAI	GTCTC	1 cut(s)	718
BsmFI	GGGAC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	142, 277, 859
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp1407I	TGTACA	2 cut(s)	475, 549
Bsp143I	GATC	2 cut(s)	305, 814
BspACI	CCGC	3 cut(s)	137, 139, 152
BspANI	GGCC	3 cut(s)	142, 277, 859
BspCNI	CTCAG	2 cut(s)	449, 832
BspFNI	CGCG	2 cut(s)	139, 154
BspLI	GGNNCC	2 cut(s)	135, 256
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	1 cut(s)	809
BspT107I	GGYRCC	1 cut(s)	254
BsrGI	TGTACA	2 cut(s)	475, 549
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	2 cut(s)	305, 814
BssSI	CACGAG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	666
Bst4CI	ACNGT	4 cut(s)	326, 379, 483, 865
BstAUI	TGTACA	2 cut(s)	475, 549
BstBAI	YACGTR	2 cut(s)	314, 770
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	436, 819, 888
BstDSI	CCRYGG	1 cut(s)	137
BstFNI	CGCG	2 cut(s)	139, 154
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	308, 817
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	2 cut(s)	305, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstNSI	RCATGY	2 cut(s)	100, 362
BstSFI	CTRYAG	1 cut(s)	741
BstSNI	TACGTA	1 cut(s)	314
BstUI	CGCG	2 cut(s)	139, 154
BstV1I	GCAGC	3 cut(s)	55, 418, 871
Bsu36I	CCTNAGG	2 cut(s)	436, 819
BsuI	GTATCC	2 cut(s)	326, 481
BsuRI	GGCC	3 cut(s)	142, 277, 859
BtgI	CCRYGG	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	829
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	857, 872
Cfr42I	CCGCGG	1 cut(s)	140
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	3 cut(s)	255, 476, 550
CviAII	CATG	2 cut(s)	97, 359
CviQI	GTAC	3 cut(s)	255, 476, 550
DdeI	CTNAG	3 cut(s)	436, 819, 888
DpnI	GATC	2 cut(s)	307, 816
DpnII	GATC	2 cut(s)	305, 814
Eco105I	TACGTA	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	872
Eco47III	AGCGCT	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	165, 213
Eco72I	CACGTG	1 cut(s)	770
Eco81I	CCTNAGG	2 cut(s)	436, 819
FaeI	CATG	2 cut(s)	100, 362
FaiI	YATR	6 cut(s)	98, 353, 360, 564, 652, 654
FalI	AAGNNNNNCTT	4 cut(s)	526, 558, 618, 650
FaqI	GGGAC	1 cut(s)	676
FatI	CATG	2 cut(s)	96, 358
FauNDI	CATATG	1 cut(s)	652
Fnu4HI	GCNGC	4 cut(s)	69, 140, 407, 885
Fsp4HI	GCNGC	4 cut(s)	69, 140, 407, 885
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	4 cut(s)	69, 140, 407, 885
GsaI	CCCAGC	1 cut(s)	542
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	142, 277, 859
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	100, 362
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	2 cut(s)	432, 466
HindII	GTYRAC	2 cut(s)	432, 466
HindIII	AAGCTT	4 cut(s)	185, 233, 448, 556
HinfI	GANTC	2 cut(s)	569, 664
HpaI	GTTAAC	1 cut(s)	466
HphI	GGTGA	2 cut(s)	111, 401
Hpy166II	GTNNAC	2 cut(s)	432, 466
Hpy188I	TCNGA	4 cut(s)	289, 348, 523, 679
Hpy188III	TCNNGA	3 cut(s)	191, 783, 821
Hpy8I	GTNNAC	2 cut(s)	432, 466
HpyAV	CCTTC	3 cut(s)	380, 691, 863
HpyCH4III	ACNGT	4 cut(s)	326, 379, 483, 865
HpyCH4IV	ACGT	4 cut(s)	202, 313, 769, 828
HpyCH4V	TGCA	3 cut(s)	424, 566, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpyF3I	CTNAG	3 cut(s)	436, 819, 888
HpySE526I	ACGT	4 cut(s)	202, 313, 769, 828
Hsp92II	CATG	2 cut(s)	100, 362
HspAI	GCGC	1 cut(s)	283
KpnI	GGTACC	1 cut(s)	258
KspAI	GTTAAC	1 cut(s)	466
KspI	CCGCGG	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	305, 814
LmnI	GCTCC	4 cut(s)	154, 202, 355, 773
LpnPI	CCDG	8 cut(s)	28, 135, 156, 204, 423, 423, 552, 806
Lsp1109I	GCAGC	3 cut(s)	55, 418, 871
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	4 cut(s)	202, 313, 769, 828
MalI	GATC	2 cut(s)	307, 816
MboI	GATC	2 cut(s)	305, 814
MboII	GAAGA	5 cut(s)	95, 257, 380, 410, 467
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	5 cut(s)	240, 692, 718, 843, 879
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	3 cut(s)	465, 546, 603
MnlI	CCTC	6 cut(s)	38, 111, 127, 445, 817, 828
MseI	TTAA	5 cut(s)	417, 465, 582, 842, 846
MspA1I	CMGCKG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	240
MvnI	CGCG	2 cut(s)	139, 154
MwoI	GCNNNNNNNGC	1 cut(s)	773
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	2 cut(s)	305, 814
NlaIII	CATG	2 cut(s)	100, 362
NlaIV	GGNNCC	2 cut(s)	135, 256
NspI	RCATGY	2 cut(s)	100, 362
PacI	TTAATTAA	1 cut(s)	846
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	4 cut(s)	70, 141, 408, 886
PleI	GAGTC	1 cut(s)	658
PmaCI	CACGTG	1 cut(s)	770
PmlI	CACGTG	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	658
Ppu21I	YACGTR	2 cut(s)	314, 770
PshBI	ATTAAT	1 cut(s)	846
PspCI	CACGTG	1 cut(s)	770
PspFI	CCCAGC	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	135, 256
PspPI	GGNCC	2 cut(s)	857, 872
PstI	CTGCAG	1 cut(s)	745
RsaI	GTAC	3 cut(s)	256, 477, 551
RsaNI	GTAC	3 cut(s)	255, 476, 550
SacII	CCGCGG	1 cut(s)	140
SaqAI	TTAA	5 cut(s)	417, 465, 582, 842, 846
SatI	GCNGC	4 cut(s)	69, 140, 407, 885
Sau3AI	GATC	2 cut(s)	305, 814
Sau96I	GGNCC	2 cut(s)	857, 872
SchI	GAGTC	1 cut(s)	658
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	741
Sfr303I	CCGCGG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	872
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SnaBI	TACGTA	1 cut(s)	314
Sse9I	AATT	5 cut(s)	240, 692, 718, 843, 879
SsiI	CCGC	3 cut(s)	137, 139, 152
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	4 cut(s)	326, 379, 483, 865
TaiI	ACGT	4 cut(s)	205, 316, 772, 831
TaqI	TCGA	1 cut(s)	784
TasI	AATT	5 cut(s)	240, 692, 718, 843, 879
TatI	WGTACW	2 cut(s)	475, 549
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	5 cut(s)	417, 465, 582, 842, 846
Tru9I	TTAA	5 cut(s)	417, 465, 582, 842, 846
TseI	GCWGC	3 cut(s)	68, 406, 884
TspDTI	ATGAA	2 cut(s)	411, 509
VpaK11BI	GGWCC	1 cut(s)	872
VspI	ATTAAT	1 cut(s)	846
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	2 cut(s)	100, 362
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.