Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005859

Physical Location & Seq

Genomic Coordinates Forward (+)

34729964 .. 34732507

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0217300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGACCAGGCTGCAATTCGAGAACTCATGTGAGGTTGGGGTGTTCTCAAAGCTGAGTAATGCGTACTGTTTGGTTGCCATTGGAGGCTCTGAGAGCTTCTACAGTACATTTGAGGCTGAGTTGGCAGATGTTATCCCTGTGGTTAAGACCTCTATTGGCGGCACTCGCATCATTGGTCGCCTCTGTGCCGGGAACAAAAATGGGCTTCTTCTGCCTCACACCACCACAGACCAAGAACTACAACACTTGAGGAACAGCTTGCCTGACCAAGTCGTTGTTCAGCGCATTGAAGAGAAACTATCTGCTCTTGGTAACTGTATCGCGTGCAATGATCATGTGGCTCTTACACACCCTGATCTTGACAGGGAAACTGAGGAGATGGTCGCAGATGTTCTCGGGGTGGAGGTTTTTAGGAACACAATTGCTACTAATGTTCTTGTGGGCAGCTTTTGTGCCTTGTCCAACAGAGGTGGCTTGGTTCATCCACACACATCTGTTGAAGACTTGGATGAACTTTCAACACTTCTTCAGGTCCCTCTGGTTGCTGGGACAGTCAACCGTGGTAGTGAAGTGATAGCAGCTGGCATGACAGTGAATGATTGGACAGCATTCTGTGGGTCTGATACAACTGCGACAGAAGTCTCAGTTATTGAAAGTGTGTTCAAGTTGAGGGAAGCTCAACCTAGTGCCATTGTGGATGAAATGAGGAAATCATTGATCGACAGCTATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009668 GO:0009707 GO:0009791 GO:0009941 GO:0009987 GO:0010027 GO:0010228 GO:0010363 GO:0010941 GO:0016020 GO:0016043 GO:0019867 GO:0022414 GO:0031090 GO:0031347 GO:0031348 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034051 GO:0042170 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0061024 GO:0061458 GO:0065007 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N TMP-TENI

Protein Analysis

245

Amino Acids

26.38

Weight (kDa)

4.7

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-6	PF01912	4 - 203	3.1e-80	eIF-6 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03160 AT1G03160 AT1G03160 AT1G03160
fragaria_vesca	FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600
malus_domestica	MD00G1063200.v1.1 MD11G1286100.v1.1 MD11G1311300.v1.1 MD11G1311400.v1.1 MD11G1311600.v1.1 MD11G1311700.v1.1 MD11G1312200.v1.1
prunus_persica	Prupe.8G241300_v2.0.a1
pyrus_communis	pycom11g25360
rosa_chinensis	RchiOBHm_Chr6g0291071
rosa_laevigata	RLG00000012149
rosa_multiflora	Rmu_co8364727.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176400
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327500 Rh6BG335000 Rh6CG341200 Rh6DG328500
rosa_wichuraiana	Rw6G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
AccII	CGCG	1 cut(s)	326
AciI	CCGC	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	68, 109
AgsI	TTSAA	5 cut(s)	293, 503, 522, 656, 667
AjnI	CCWGG	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	7 cut(s)	55, 99, 261, 450, 584, 680, 729
AluI	AGCT	7 cut(s)	55, 99, 261, 450, 584, 680, 729
Alw26I	GTCTC	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	13, 447, 581
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	535
AsuC2I	CCSGG	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	459, 593
BccI	CCATC	1 cut(s)	376
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	10
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	4 cut(s)	14, 163, 448, 582
BlsI	GCNGC	4 cut(s)	15, 164, 449, 583
Bme1390I	CCNGG	2 cut(s)	10, 193
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	2 cut(s)	10, 193
BmsI	GCATC	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	510
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	3 cut(s)	484, 517, 706
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	5 cut(s)	47, 84, 111, 366, 660
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	459, 593
BseYI	CCCAGC	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	521, 565
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	2 cut(s)	521, 565
BsmI	GAATGC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	334, 358, 720
BspACI	CCGC	1 cut(s)	162
BspCNI	CTCAG	5 cut(s)	48, 85, 112, 367, 659
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	3 cut(s)	334, 358, 720
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	6 cut(s)	71, 107, 320, 556, 563, 595
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	263, 328, 586
BstDEI	CTNAG	5 cut(s)	56, 93, 120, 375, 646
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	3 cut(s)	484, 517, 706
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	337, 361, 723
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	3 cut(s)	334, 358, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 125, 168, 214
BstNI	CCWGG	1 cut(s)	10
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	8, 191
BstSFI	CTRYAG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	459, 593
BstV2I	GAAGAC	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	484, 517, 706
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	3 cut(s)	263, 328, 586
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	67, 108
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	3 cut(s)	30, 338, 589
CviQI	GTAC	2 cut(s)	67, 108
DdeI	CTNAG	5 cut(s)	56, 93, 120, 375, 646
DpnI	GATC	3 cut(s)	336, 360, 722
DpnII	GATC	3 cut(s)	334, 358, 720
DrdI	GACNNNNNNGTC	1 cut(s)	731
DseDI	GACNNNNNNGTC	1 cut(s)	731
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	33, 341, 592
FaiI	YATR	4 cut(s)	31, 339, 590, 732
FaqI	GGGAC	2 cut(s)	521, 565
FatI	CATG	3 cut(s)	29, 337, 588
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	4 cut(s)	14, 163, 448, 582
FokI	GGATG	3 cut(s)	471, 524, 713
Fsp4HI	GCNGC	4 cut(s)	14, 163, 448, 582
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	4 cut(s)	14, 163, 448, 582
GsaI	CCCAGC	1 cut(s)	552
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	33, 341, 592
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	3 cut(s)	94, 625, 737
Hpy188III	TCNNGA	2 cut(s)	22, 362
Hpy8I	GTNNAC	1 cut(s)	559
HpyCH4III	ACNGT	6 cut(s)	71, 107, 320, 556, 563, 595
HpyCH4V	TGCA	2 cut(s)	16, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 125, 168, 214
HpyF3I	CTNAG	5 cut(s)	56, 93, 120, 375, 646
Hsp92II	CATG	3 cut(s)	33, 341, 592
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	334, 358, 720
Lsp1109I	GCAGC	2 cut(s)	459, 593
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	3 cut(s)	336, 360, 722
MboI	GATC	3 cut(s)	334, 358, 720
MboII	GAAGA	4 cut(s)	203, 305, 515, 521
MfeI	CAATTG	1 cut(s)	423
MluCI	AATT	2 cut(s)	17, 423
MmeI	TCCRAC	1 cut(s)	489
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	10, 193
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	96, 125, 168, 214
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	334, 358, 720
NlaIII	CATG	3 cut(s)	33, 341, 592
NlaIV	GGNNCC	1 cut(s)	537
PctI	GAATGC	1 cut(s)	611
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	15, 164, 449, 583
PpuMI	RGGWCCY	1 cut(s)	535
PshAI	GACNNNNGTC	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	535
PspPPI	RGGWCCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	2 cut(s)	68, 109
RsaNI	GTAC	2 cut(s)	67, 108
RseI	CAYNNNNRTG	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	14, 163, 448, 582
Sau3AI	GATC	3 cut(s)	334, 358, 720
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	10, 193
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	17, 423
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	8, 191
TaaI	ACNGT	6 cut(s)	71, 107, 320, 556, 563, 595
TaqI	TCGA	2 cut(s)	21, 723
TasI	AATT	2 cut(s)	17, 423
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	600
TseI	GCWGC	3 cut(s)	13, 447, 581
TspDTI	ATGAA	3 cut(s)	473, 528, 717
TspRI	CASTG	1 cut(s)	600
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	535
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.